Experiment: KB with Mitomycin C 0.05 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3832 and Psyr_3833 overlap by 11 nucleotides Psyr_3833 and Psyr_3834 are separated by 317 nucleotides Psyr_3834 and Psyr_3835 are separated by 68 nucleotides Psyr_3835 and Psyr_3836 are separated by 125 nucleotides
Psyr_3832: Psyr_3832 - Prevent-host-death protein, at 4,568,993 to 4,569,238
_3832
Psyr_3833: Psyr_3833 - Plasmid stabilization system, at 4,569,228 to 4,569,518
_3833
Psyr_3834: Psyr_3834 - AMP-dependent synthetase and ligase, at 4,569,836 to 4,571,527
_3834
Psyr_3835: Psyr_3835 - hypothetical protein, at 4,571,596 to 4,571,757
_3835
Psyr_3836: Psyr_3836 - AMP-dependent synthetase and ligase, at 4,571,883 to 4,573,571
_3836
Position (kb) 4569
4570
4571
4572 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 4568.908 kb on + strand at 4568.908 kb on + strand at 4568.909 kb on - strand at 4569.223 kb on + strand at 4569.224 kb on - strand at 4569.224 kb on - strand at 4569.224 kb on - strand at 4569.224 kb on - strand at 4569.224 kb on - strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.237 kb on - strand at 4569.288 kb on - strand, within Psyr_3833 at 4569.288 kb on - strand, within Psyr_3833 at 4569.378 kb on + strand, within Psyr_3833 at 4569.378 kb on + strand, within Psyr_3833 at 4569.379 kb on - strand, within Psyr_3833 at 4569.379 kb on - strand, within Psyr_3833 at 4569.434 kb on + strand, within Psyr_3833 at 4569.434 kb on + strand, within Psyr_3833 at 4569.435 kb on - strand, within Psyr_3833 at 4569.435 kb on - strand, within Psyr_3833 at 4569.482 kb on + strand, within Psyr_3833 at 4569.482 kb on + strand, within Psyr_3833 at 4569.483 kb on - strand, within Psyr_3833 at 4569.483 kb on - strand, within Psyr_3833 at 4569.486 kb on + strand, within Psyr_3833 at 4569.486 kb on + strand, within Psyr_3833 at 4569.486 kb on + strand, within Psyr_3833 at 4569.486 kb on + strand, within Psyr_3833 at 4569.486 kb on + strand, within Psyr_3833 at 4569.537 kb on + strand at 4569.537 kb on + strand at 4569.538 kb on - strand at 4569.648 kb on - strand at 4569.745 kb on - strand at 4569.778 kb on + strand at 4569.778 kb on + strand at 4569.780 kb on + strand at 4569.781 kb on - strand at 4569.782 kb on + strand at 4569.782 kb on + strand at 4569.783 kb on - strand at 4569.783 kb on - strand at 4569.783 kb on - strand at 4569.783 kb on - strand at 4569.783 kb on - strand at 4569.837 kb on + strand at 4569.837 kb on + strand at 4569.837 kb on + strand at 4569.837 kb on + strand at 4569.838 kb on - strand at 4569.838 kb on - strand at 4569.838 kb on - strand at 4569.838 kb on - strand at 4569.838 kb on - strand at 4569.838 kb on - strand at 4569.952 kb on - strand at 4570.106 kb on + strand, within Psyr_3834 at 4570.106 kb on + strand, within Psyr_3834 at 4570.156 kb on + strand, within Psyr_3834 at 4570.156 kb on + strand, within Psyr_3834 at 4570.156 kb on + strand, within Psyr_3834 at 4570.157 kb on - strand, within Psyr_3834 at 4570.157 kb on - strand, within Psyr_3834 at 4570.157 kb on - strand, within Psyr_3834 at 4570.185 kb on + strand, within Psyr_3834 at 4570.185 kb on + strand, within Psyr_3834 at 4570.186 kb on - strand, within Psyr_3834 at 4570.275 kb on + strand, within Psyr_3834 at 4570.408 kb on - strand, within Psyr_3834 at 4570.408 kb on - strand, within Psyr_3834 at 4570.408 kb on - strand, within Psyr_3834 at 4570.606 kb on + strand, within Psyr_3834 at 4570.737 kb on + strand, within Psyr_3834 at 4570.737 kb on + strand, within Psyr_3834 at 4570.738 kb on - strand, within Psyr_3834 at 4570.738 kb on - strand, within Psyr_3834 at 4570.738 kb on - strand, within Psyr_3834 at 4570.738 kb on - strand, within Psyr_3834 at 4570.738 kb on - strand, within Psyr_3834 at 4570.738 kb on - strand, within Psyr_3834 at 4570.747 kb on - strand, within Psyr_3834 at 4570.888 kb on - strand, within Psyr_3834 at 4570.888 kb on - strand, within Psyr_3834 at 4571.016 kb on + strand, within Psyr_3834 at 4571.016 kb on + strand, within Psyr_3834 at 4571.016 kb on + strand, within Psyr_3834 at 4571.016 kb on + strand, within Psyr_3834 at 4571.016 kb on + strand, within Psyr_3834 at 4571.016 kb on + strand, within Psyr_3834 at 4571.017 kb on - strand, within Psyr_3834 at 4571.017 kb on - strand, within Psyr_3834 at 4571.017 kb on - strand, within Psyr_3834 at 4571.202 kb on + strand, within Psyr_3834 at 4571.202 kb on + strand, within Psyr_3834 at 4571.202 kb on + strand, within Psyr_3834 at 4571.273 kb on + strand, within Psyr_3834 at 4571.274 kb on - strand, within Psyr_3834 at 4571.274 kb on - strand, within Psyr_3834 at 4571.274 kb on - strand, within Psyr_3834 at 4571.274 kb on - strand, within Psyr_3834 at 4571.274 kb on - strand, within Psyr_3834 at 4571.274 kb on - strand, within Psyr_3834 at 4571.274 kb on - strand, within Psyr_3834 at 4571.320 kb on + strand, within Psyr_3834 at 4571.361 kb on + strand at 4571.361 kb on + strand at 4571.361 kb on + strand at 4571.361 kb on + strand at 4571.361 kb on + strand at 4571.362 kb on - strand at 4571.362 kb on - strand at 4571.362 kb on - strand at 4571.362 kb on - strand at 4571.362 kb on - strand at 4571.362 kb on - strand at 4571.373 kb on + strand at 4571.373 kb on + strand at 4571.374 kb on - strand at 4571.374 kb on - strand at 4571.374 kb on - strand at 4571.499 kb on + strand at 4571.500 kb on - strand at 4571.500 kb on - strand at 4571.597 kb on + strand at 4571.597 kb on + strand at 4571.605 kb on - strand at 4571.622 kb on + strand, within Psyr_3835 at 4571.651 kb on - strand, within Psyr_3835 at 4571.651 kb on - strand, within Psyr_3835 at 4571.651 kb on - strand, within Psyr_3835 at 4571.704 kb on + strand, within Psyr_3835 at 4571.734 kb on + strand, within Psyr_3835 at 4571.798 kb on + strand at 4571.799 kb on - strand at 4571.799 kb on - strand at 4571.799 kb on - strand at 4571.975 kb on - strand at 4571.975 kb on - strand at 4572.231 kb on - strand, within Psyr_3836 at 4572.296 kb on - strand, within Psyr_3836 at 4572.429 kb on - strand, within Psyr_3836 at 4572.429 kb on - strand, within Psyr_3836
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.05 ug/ml remove 4,568,908 + +1.1 4,568,908 + +0.8 4,568,909 - -1.4 4,569,223 + +3.6 4,569,224 - +0.8 4,569,224 - -3.4 4,569,224 - +1.4 4,569,224 - -2.1 4,569,224 - -1.7 4,569,225 + -0.8 4,569,225 + +2.4 4,569,225 + -3.6 4,569,225 + +0.8 4,569,225 + +3.1 4,569,225 + -3.1 4,569,225 + -1.5 4,569,225 + +2.4 4,569,225 + -0.6 4,569,225 + -3.3 4,569,225 + +1.1 4,569,225 + +1.2 4,569,225 + -0.9 4,569,225 + +3.8 4,569,225 + +1.3 4,569,225 + +0.8 4,569,225 + +0.8 4,569,225 + -1.2 4,569,225 + -1.8 4,569,225 + +1.0 4,569,225 + +1.8 4,569,225 + +0.8 4,569,225 + +0.2 4,569,225 + -0.2 4,569,225 + -1.8 4,569,225 + +2.0 4,569,225 + +0.1 4,569,225 + +0.2 4,569,225 + +1.8 4,569,225 + +2.2 4,569,225 + +2.4 4,569,225 + -0.1 4,569,225 + -2.5 4,569,225 + -1.5 4,569,225 + -0.9 4,569,225 + +3.8 4,569,225 + -1.1 4,569,225 + +0.8 4,569,225 + -1.5 4,569,225 + -0.0 4,569,226 - -0.5 4,569,226 - -1.9 4,569,226 - +1.8 4,569,226 - +0.8 4,569,226 - +0.8 4,569,226 - +0.8 4,569,226 - -0.4 4,569,226 - +3.1 4,569,226 - -2.2 4,569,226 - -0.4 4,569,226 - -2.4 4,569,226 - -1.8 4,569,226 - -1.2 4,569,226 - +0.8 4,569,226 - -2.6 4,569,226 - -2.2 4,569,226 - +0.8 4,569,226 - -0.4 4,569,226 - -2.4 4,569,226 - +0.8 4,569,226 - -2.1 4,569,226 - -0.8 4,569,226 - +0.8 4,569,237 - -0.9 4,569,288 - Psyr_3833 0.21 -2.0 4,569,288 - Psyr_3833 0.21 -0.8 4,569,378 + Psyr_3833 0.52 -2.5 4,569,378 + Psyr_3833 0.52 +2.8 4,569,379 - Psyr_3833 0.52 -2.0 4,569,379 - Psyr_3833 0.52 +0.4 4,569,434 + Psyr_3833 0.71 -1.2 4,569,434 + Psyr_3833 0.71 -1.2 4,569,435 - Psyr_3833 0.71 -1.1 4,569,435 - Psyr_3833 0.71 -1.9 4,569,482 + Psyr_3833 0.87 -0.1 4,569,482 + Psyr_3833 0.87 -0.9 4,569,483 - Psyr_3833 0.88 -2.9 4,569,483 - Psyr_3833 0.88 -0.5 4,569,486 + Psyr_3833 0.89 +3.4 4,569,486 + Psyr_3833 0.89 +5.0 4,569,486 + Psyr_3833 0.89 +2.1 4,569,486 + Psyr_3833 0.89 +0.8 4,569,486 + Psyr_3833 0.89 -0.2 4,569,537 + -1.0 4,569,537 + +0.2 4,569,538 - -1.3 4,569,648 - -2.2 4,569,745 - +3.6 4,569,778 + -0.6 4,569,778 + -1.6 4,569,780 + +0.8 4,569,781 - +1.5 4,569,782 + -2.1 4,569,782 + -0.2 4,569,783 - -2.5 4,569,783 - -0.2 4,569,783 - +0.8 4,569,783 - +0.8 4,569,783 - -0.6 4,569,837 + -3.4 4,569,837 + -0.7 4,569,837 + -0.2 4,569,837 + -0.8 4,569,838 - +2.1 4,569,838 - +3.1 4,569,838 - -0.9 4,569,838 - -1.5 4,569,838 - -0.8 4,569,838 - -0.3 4,569,952 - -0.3 4,570,106 + Psyr_3834 0.16 -1.0 4,570,106 + Psyr_3834 0.16 -1.4 4,570,156 + Psyr_3834 0.19 +3.6 4,570,156 + Psyr_3834 0.19 -2.6 4,570,156 + Psyr_3834 0.19 +2.4 4,570,157 - Psyr_3834 0.19 -3.6 4,570,157 - Psyr_3834 0.19 +0.1 4,570,157 - Psyr_3834 0.19 +0.8 4,570,185 + Psyr_3834 0.21 -0.8 4,570,185 + Psyr_3834 0.21 +1.6 4,570,186 - Psyr_3834 0.21 -0.4 4,570,275 + Psyr_3834 0.26 +2.3 4,570,408 - Psyr_3834 0.34 -2.2 4,570,408 - Psyr_3834 0.34 -1.1 4,570,408 - Psyr_3834 0.34 +0.2 4,570,606 + Psyr_3834 0.46 +0.3 4,570,737 + Psyr_3834 0.53 -2.0 4,570,737 + Psyr_3834 0.53 -0.4 4,570,738 - Psyr_3834 0.53 -1.4 4,570,738 - Psyr_3834 0.53 -1.0 4,570,738 - Psyr_3834 0.53 +2.3 4,570,738 - Psyr_3834 0.53 +3.6 4,570,738 - Psyr_3834 0.53 -1.8 4,570,738 - Psyr_3834 0.53 -3.0 4,570,747 - Psyr_3834 0.54 -0.4 4,570,888 - Psyr_3834 0.62 +3.1 4,570,888 - Psyr_3834 0.62 -2.9 4,571,016 + Psyr_3834 0.70 -1.4 4,571,016 + Psyr_3834 0.70 -0.4 4,571,016 + Psyr_3834 0.70 -1.6 4,571,016 + Psyr_3834 0.70 -0.3 4,571,016 + Psyr_3834 0.70 -2.2 4,571,016 + Psyr_3834 0.70 +0.8 4,571,017 - Psyr_3834 0.70 +0.8 4,571,017 - Psyr_3834 0.70 -0.6 4,571,017 - Psyr_3834 0.70 -0.4 4,571,202 + Psyr_3834 0.81 -0.5 4,571,202 + Psyr_3834 0.81 +1.8 4,571,202 + Psyr_3834 0.81 +3.4 4,571,273 + Psyr_3834 0.85 -1.1 4,571,274 - Psyr_3834 0.85 +2.4 4,571,274 - Psyr_3834 0.85 +0.1 4,571,274 - Psyr_3834 0.85 -4.5 4,571,274 - Psyr_3834 0.85 +0.3 4,571,274 - Psyr_3834 0.85 -0.6 4,571,274 - Psyr_3834 0.85 -3.5 4,571,274 - Psyr_3834 0.85 -1.3 4,571,320 + Psyr_3834 0.88 -2.4 4,571,361 + +0.8 4,571,361 + -3.4 4,571,361 + -1.1 4,571,361 + -1.5 4,571,361 + +4.0 4,571,362 - -2.2 4,571,362 - -2.4 4,571,362 - +0.0 4,571,362 - +0.8 4,571,362 - -0.0 4,571,362 - +1.5 4,571,373 + -0.3 4,571,373 + -1.6 4,571,374 - -0.1 4,571,374 - -0.2 4,571,374 - +2.8 4,571,499 + +0.8 4,571,500 - -0.6 4,571,500 - -1.4 4,571,597 + -0.4 4,571,597 + -2.5 4,571,605 - -0.1 4,571,622 + Psyr_3835 0.16 +0.1 4,571,651 - Psyr_3835 0.34 +2.8 4,571,651 - Psyr_3835 0.34 -1.9 4,571,651 - Psyr_3835 0.34 -1.7 4,571,704 + Psyr_3835 0.67 -0.8 4,571,734 + Psyr_3835 0.85 -2.5 4,571,798 + -0.5 4,571,799 - +0.1 4,571,799 - -2.6 4,571,799 - -0.4 4,571,975 - +0.9 4,571,975 - +2.0 4,572,231 - Psyr_3836 0.21 +1.8 4,572,296 - Psyr_3836 0.24 +0.1 4,572,429 - Psyr_3836 0.32 +1.4 4,572,429 - Psyr_3836 0.32 -0.4
Or see this region's nucleotide sequence