Experiment: KB with Mitomycin C 0.05 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3002 and Psyr_3003 are separated by 376 nucleotides Psyr_3003 and Psyr_3004 are separated by 74 nucleotides
Psyr_3002: Psyr_3002 - conserved hypothetical protein, at 3,597,756 to 3,598,796
_3002
Psyr_3003: Psyr_3003 - [Acyl-carrier protein] phosphodiesterase, at 3,599,173 to 3,599,781
_3003
Psyr_3004: Psyr_3004 - transcriptional regulator, LysR family, at 3,599,856 to 3,600,815
_3004
Position (kb) 3599
3600 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8
9 at 3598.329 kb on + strand, within Psyr_3002 at 3598.329 kb on + strand, within Psyr_3002 at 3598.329 kb on + strand, within Psyr_3002 at 3598.329 kb on + strand, within Psyr_3002 at 3598.330 kb on - strand, within Psyr_3002 at 3598.330 kb on - strand, within Psyr_3002 at 3598.330 kb on - strand, within Psyr_3002 at 3598.330 kb on - strand, within Psyr_3002 at 3598.330 kb on - strand, within Psyr_3002 at 3598.330 kb on - strand, within Psyr_3002 at 3598.330 kb on - strand, within Psyr_3002 at 3598.334 kb on - strand, within Psyr_3002 at 3598.706 kb on - strand at 3598.791 kb on + strand at 3598.791 kb on + strand at 3598.792 kb on - strand at 3598.792 kb on - strand at 3598.792 kb on - strand at 3598.894 kb on + strand at 3598.894 kb on + strand at 3598.894 kb on + strand at 3598.894 kb on + strand at 3598.895 kb on - strand at 3598.915 kb on + strand at 3598.916 kb on - strand at 3598.916 kb on - strand at 3598.934 kb on + strand at 3598.967 kb on - strand at 3598.967 kb on - strand at 3599.005 kb on - strand at 3599.010 kb on - strand at 3599.018 kb on - strand at 3599.035 kb on + strand at 3599.055 kb on + strand at 3599.055 kb on + strand at 3599.056 kb on - strand at 3599.148 kb on - strand at 3599.148 kb on - strand at 3599.201 kb on + strand at 3599.201 kb on + strand at 3599.202 kb on - strand at 3599.329 kb on + strand, within Psyr_3003 at 3599.495 kb on + strand, within Psyr_3003 at 3599.495 kb on + strand, within Psyr_3003 at 3599.495 kb on + strand, within Psyr_3003 at 3599.495 kb on + strand, within Psyr_3003 at 3599.496 kb on - strand, within Psyr_3003 at 3599.496 kb on - strand, within Psyr_3003 at 3599.496 kb on - strand, within Psyr_3003 at 3599.496 kb on - strand, within Psyr_3003 at 3599.496 kb on - strand, within Psyr_3003 at 3599.666 kb on + strand, within Psyr_3003 at 3599.699 kb on + strand, within Psyr_3003 at 3599.700 kb on - strand, within Psyr_3003 at 3599.774 kb on - strand at 3599.774 kb on - strand at 3599.786 kb on + strand at 3599.786 kb on + strand at 3599.787 kb on - strand at 3599.787 kb on - strand at 3599.787 kb on - strand at 3599.850 kb on - strand at 3600.619 kb on + strand, within Psyr_3004 at 3600.619 kb on + strand, within Psyr_3004 at 3600.620 kb on - strand, within Psyr_3004 at 3600.620 kb on - strand, within Psyr_3004 at 3600.622 kb on + strand, within Psyr_3004
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.05 ug/ml remove 3,598,329 + Psyr_3002 0.55 +3.1 3,598,329 + Psyr_3002 0.55 +1.4 3,598,329 + Psyr_3002 0.55 -0.2 3,598,329 + Psyr_3002 0.55 -0.5 3,598,330 - Psyr_3002 0.55 -2.4 3,598,330 - Psyr_3002 0.55 +1.2 3,598,330 - Psyr_3002 0.55 +1.2 3,598,330 - Psyr_3002 0.55 +0.9 3,598,330 - Psyr_3002 0.55 +0.8 3,598,330 - Psyr_3002 0.55 +0.5 3,598,330 - Psyr_3002 0.55 +4.1 3,598,334 - Psyr_3002 0.56 +1.7 3,598,706 - +3.3 3,598,791 + -2.6 3,598,791 + -2.6 3,598,792 - +4.4 3,598,792 - -0.8 3,598,792 - -1.0 3,598,894 + -1.6 3,598,894 + -0.0 3,598,894 + -2.4 3,598,894 + -3.5 3,598,895 - +3.3 3,598,915 + -0.1 3,598,916 - +0.8 3,598,916 - -1.5 3,598,934 + -1.5 3,598,967 - -0.7 3,598,967 - -1.0 3,599,005 - +3.1 3,599,010 - +2.1 3,599,018 - +1.5 3,599,035 + -1.7 3,599,055 + -0.5 3,599,055 + -1.2 3,599,056 - +1.0 3,599,148 - +0.4 3,599,148 - -2.3 3,599,201 + +9.4 3,599,201 + +5.1 3,599,202 - +3.7 3,599,329 + Psyr_3003 0.26 +7.3 3,599,495 + Psyr_3003 0.53 +8.7 3,599,495 + Psyr_3003 0.53 +8.0 3,599,495 + Psyr_3003 0.53 +4.8 3,599,495 + Psyr_3003 0.53 +5.1 3,599,496 - Psyr_3003 0.53 +4.4 3,599,496 - Psyr_3003 0.53 +3.2 3,599,496 - Psyr_3003 0.53 +2.7 3,599,496 - Psyr_3003 0.53 +3.2 3,599,496 - Psyr_3003 0.53 +3.9 3,599,666 + Psyr_3003 0.81 +6.9 3,599,699 + Psyr_3003 0.86 +4.6 3,599,700 - Psyr_3003 0.87 +2.7 3,599,774 - +2.6 3,599,774 - +4.4 3,599,786 + +1.2 3,599,786 + +1.0 3,599,787 - +2.1 3,599,787 - +3.9 3,599,787 - -1.4 3,599,850 - +0.8 3,600,619 + Psyr_3004 0.79 -0.2 3,600,619 + Psyr_3004 0.79 -1.8 3,600,620 - Psyr_3004 0.80 -1.2 3,600,620 - Psyr_3004 0.80 -0.1 3,600,622 + Psyr_3004 0.80 +2.5
Or see this region's nucleotide sequence