Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4444

Experiment: a-Cyclodextrin (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	a-Cyclodextrin (C)
5,315,899	-		Echvi_4443	0.56	-0.5
5,315,909	+		Echvi_4443	0.56	+0.9
5,316,042	-		Echvi_4443	0.65	+0.6
5,316,055	+		Echvi_4443	0.65	-0.3
5,316,055	+		Echvi_4443	0.65	+0.7
5,316,057	+		Echvi_4443	0.66	-0.6
5,316,057	+		Echvi_4443	0.66	+0.4
5,316,057	+		Echvi_4443	0.66	+0.3
5,316,058	-		Echvi_4443	0.66	-0.6
5,316,058	-		Echvi_4443	0.66	+0.7
5,316,058	-		Echvi_4443	0.66	+0.3
5,316,058	-		Echvi_4443	0.66	-0.2
5,316,062	+				+1.0
5,316,063	-		Echvi_4443	0.66	-0.2
5,316,063	-		Echvi_4443	0.66	-1.8
5,316,205	+		Echvi_4443	0.75	-0.2
5,316,206	-		Echvi_4443	0.75	-2.4
5,316,206	-		Echvi_4443	0.75	+0.6
5,316,220	+		Echvi_4443	0.76	+1.4
5,316,253	+		Echvi_4443	0.78	-0.4
5,316,255	+		Echvi_4443	0.78	+1.1
5,316,255	+		Echvi_4443	0.78	+0.8
5,316,256	-		Echvi_4443	0.78	+0.0
5,316,280	+		Echvi_4443	0.80	+1.2
5,316,295	-		Echvi_4443	0.81	-1.2
5,316,380	-		Echvi_4443	0.86	+0.6
5,316,393	-		Echvi_4443	0.87	+0.3
5,316,408	-		Echvi_4443	0.88	-0.4
5,316,417	+		Echvi_4443	0.88	+2.0
5,316,418	-		Echvi_4443	0.88	-2.9
5,316,457	-				+0.6
5,316,463	-				-0.4
5,316,463	-				-3.7
5,316,463	-				+0.8
5,316,481	-				+0.1
5,316,481	-				+0.3
5,316,486	+				+1.1
5,316,486	+				-1.3
5,316,487	-				-1.3
5,316,493	+				-0.3
5,316,494	-				+0.2
5,316,494	-				+0.4
5,316,494	-				-2.7
5,316,494	-				-0.8
5,316,506	-				-1.3
5,316,508	-				-1.2
5,316,508	-				+2.0
5,316,508	-				-1.6
5,316,515	-				-0.8
5,316,517	-				+0.0
5,316,609	+				-2.6
5,316,609	+				-1.4
5,316,705	-				+0.7
5,316,750	-				-0.8
5,316,753	+				+0.7
5,316,757	+				-0.8
5,316,757	+				-0.8
5,316,758	-				+0.0
5,316,784	+				-0.5
5,316,784	+				+1.9
5,316,785	-				+0.2
5,316,789	+				-0.9
5,316,789	+				+2.8
5,316,796	+				-0.5
5,316,837	-				+0.2
5,316,837	-				-1.0
5,316,880	+				+0.9
5,316,890	+				-2.1
5,316,891	-				+0.5
5,316,895	-				+0.7
5,316,945	+		Echvi_4444	0.15	-0.2
5,316,945	+		Echvi_4444	0.15	-0.3
5,316,946	-		Echvi_4444	0.16	+0.2
5,316,946	-		Echvi_4444	0.16	-0.1
5,317,002	+		Echvi_4444	0.31	-0.2
5,317,034	-		Echvi_4444	0.40	-0.1
5,317,108	+		Echvi_4444	0.60	-1.4
5,317,108	+		Echvi_4444	0.60	-0.5
5,317,108	+		Echvi_4444	0.60	-2.4
5,317,108	+		Echvi_4444	0.60	-0.9
5,317,109	-		Echvi_4444	0.60	-0.8
5,317,134	+		Echvi_4444	0.67	-0.3
5,317,134	+		Echvi_4444	0.67	-2.2
5,317,134	+		Echvi_4444	0.67	+0.1
5,317,140	+		Echvi_4444	0.69	-2.0
5,317,154	+		Echvi_4444	0.72	+0.6
5,317,181	+		Echvi_4444	0.80	+0.3
5,317,203	-		Echvi_4444	0.86	-1.2
5,317,203	-		Echvi_4444	0.86	-0.4
5,317,211	+		Echvi_4444	0.88	-1.0
5,317,212	-		Echvi_4444	0.88	-0.6
5,317,212	-		Echvi_4444	0.88	+0.8
5,317,212	-		Echvi_4444	0.88	-0.2
5,317,255	-				+0.6
5,317,258	-				+0.4
5,317,258	-				+0.4
5,317,258	-				-0.1
5,317,288	+				-0.0
5,317,300	+				-0.7
5,317,319	+				+0.8
5,317,319	+				-0.5
5,317,319	+				+0.2
5,317,319	+				-0.5
5,317,319	+				+0.7
5,317,323	+				-1.4
5,317,347	+				-0.3
5,317,376	+				-1.0
5,317,377	-				-0.1
5,317,380	+				-0.1
5,317,380	+				-0.6
5,317,381	-				+1.0
5,317,383	-				-1.2
5,317,386	+				+0.7
5,317,387	-				+0.4
5,317,387	-				+0.2
5,317,393	+				-0.8
5,317,393	+				+2.6
5,317,393	+				+1.8
5,317,431	+				-0.0
5,317,432	-				+0.4
5,317,445	+				+0.9
5,317,449	+				+0.1
5,317,454	-				-2.6
5,317,454	-				-0.8
5,317,467	+				-1.6
5,317,481	+				-0.7
5,317,530	-				-1.0
5,317,534	+				+0.9
5,317,593	+				-1.4
5,317,608	+				-1.6
5,317,644	+				-0.0
5,317,652	+				-0.9
5,317,669	-				+0.4
5,317,690	-				-2.3
5,317,690	-				+1.4
5,317,762	+		Echvi_4445	0.13	-0.6
5,317,762	+		Echvi_4445	0.13	-0.6
5,317,762	+		Echvi_4445	0.13	+0.0
5,317,772	-		Echvi_4445	0.14	+0.1
5,317,772	-		Echvi_4445	0.14	-0.1
5,317,825	-		Echvi_4445	0.17	-2.8
5,317,834	-		Echvi_4445	0.18	-0.3
5,317,834	-		Echvi_4445	0.18	-0.6
5,317,834	-		Echvi_4445	0.18	-0.1
5,317,836	-		Echvi_4445	0.18	+1.9
5,317,836	-		Echvi_4445	0.18	-0.2
5,317,836	-		Echvi_4445	0.18	-0.7
5,317,949	+		Echvi_4445	0.24	-0.1
5,318,015	-		Echvi_4445	0.28	+0.5
5,318,015	-		Echvi_4445	0.28	+0.7
5,318,017	+		Echvi_4445	0.28	-1.2
5,318,018	-		Echvi_4445	0.28	+0.9
5,318,026	+		Echvi_4445	0.29	+0.4
5,318,026	+		Echvi_4445	0.29	-1.3
5,318,026	+		Echvi_4445	0.29	+0.1
5,318,027	-		Echvi_4445	0.29	+2.7
5,318,028	+		Echvi_4445	0.29	-0.0
5,318,028	+		Echvi_4445	0.29	+1.1
5,318,029	-		Echvi_4445	0.29	-0.7
5,318,029	-		Echvi_4445	0.29	-0.3
5,318,029	-		Echvi_4445	0.29	-1.0
5,318,054	-		Echvi_4445	0.30	+0.1
5,318,116	+		Echvi_4445	0.34	-0.4
5,318,117	-		Echvi_4445	0.34	-0.8
5,318,117	-		Echvi_4445	0.34	+1.8
5,318,117	-		Echvi_4445	0.34	-0.1
5,318,132	-		Echvi_4445	0.35	+0.0
5,318,179	+		Echvi_4445	0.37	+1.8
5,318,184	+		Echvi_4445	0.38	-0.6
5,318,195	+		Echvi_4445	0.38	+0.2
5,318,225	+		Echvi_4445	0.40	-0.6
5,318,245	+		Echvi_4445	0.41	+2.3
5,318,250	+		Echvi_4445	0.41	-0.3
5,318,250	+		Echvi_4445	0.41	-0.2
5,318,254	+		Echvi_4445	0.42	-0.2