Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0636

Experiment: a-Cyclodextrin (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_0634 and Echvi_0635 are separated by 92 nucleotidesEchvi_0635 and Echvi_0636 overlap by 11 nucleotidesEchvi_0636 and Echvi_0637 are separated by 24 nucleotides Echvi_0634: Echvi_0634 - Parvulin-like peptidyl-prolyl isomerase, at 717,351 to 719,366 _0634 Echvi_0635: Echvi_0635 - Anti-sigma regulatory factor (Ser/Thr protein kinase), at 719,459 to 719,887 _0635 Echvi_0636: Echvi_0636 - anti-anti-sigma factor, at 719,877 to 720,221 _0636 Echvi_0637: Echvi_0637 - Serine phosphatase RsbU, regulator of sigma subunit, at 720,246 to 722,312 _0637 Position (kb) 719 720 721Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 718.946 kb on + strand, within Echvi_0634at 718.946 kb on + strand, within Echvi_0634at 718.947 kb on - strand, within Echvi_0634at 718.947 kb on - strand, within Echvi_0634at 718.947 kb on - strand, within Echvi_0634at 718.947 kb on - strand, within Echvi_0634at 718.947 kb on - strand, within Echvi_0634at 718.981 kb on + strand, within Echvi_0634at 718.982 kb on - strand, within Echvi_0634at 719.025 kb on - strand, within Echvi_0634at 719.026 kb on + strand, within Echvi_0634at 719.038 kb on - strand, within Echvi_0634at 719.123 kb on + strand, within Echvi_0634at 719.123 kb on + strand, within Echvi_0634at 719.125 kb on + strand, within Echvi_0634at 719.125 kb on + strand, within Echvi_0634at 719.130 kb on + strand, within Echvi_0634at 719.220 kb on - strandat 719.220 kb on - strandat 719.264 kb on - strandat 719.281 kb on - strandat 719.328 kb on + strandat 719.329 kb on - strandat 719.353 kb on + strandat 719.353 kb on + strandat 719.353 kb on + strandat 719.354 kb on - strandat 719.357 kb on + strandat 719.369 kb on + strandat 719.369 kb on + strandat 719.369 kb on + strandat 719.373 kb on + strandat 719.374 kb on - strandat 719.374 kb on - strandat 719.374 kb on - strandat 719.374 kb on - strandat 719.439 kb on + strandat 719.439 kb on + strandat 719.439 kb on + strandat 719.439 kb on + strandat 719.439 kb on + strandat 719.439 kb on + strandat 719.439 kb on + strandat 719.439 kb on + strandat 719.440 kb on - strandat 719.440 kb on - strandat 719.440 kb on - strandat 719.453 kb on + strandat 719.873 kb on + strandat 719.873 kb on + strandat 719.912 kb on + strand, within Echvi_0636at 719.912 kb on + strand, within Echvi_0636at 719.958 kb on + strandat 719.959 kb on - strand, within Echvi_0636at 719.967 kb on + strand, within Echvi_0636at 719.967 kb on + strand, within Echvi_0636at 719.968 kb on - strand, within Echvi_0636at 720.028 kb on + strand, within Echvi_0636at 720.035 kb on + strand, within Echvi_0636at 720.036 kb on - strand, within Echvi_0636at 720.045 kb on + strand, within Echvi_0636at 720.046 kb on - strand, within Echvi_0636at 720.062 kb on + strand, within Echvi_0636at 720.063 kb on - strand, within Echvi_0636at 720.069 kb on + strand, within Echvi_0636at 720.069 kb on + strand, within Echvi_0636at 720.070 kb on - strand, within Echvi_0636at 720.124 kb on - strand, within Echvi_0636at 720.124 kb on - strand, within Echvi_0636at 720.149 kb on + strand, within Echvi_0636at 720.149 kb on + strand, within Echvi_0636at 720.185 kb on + strand, within Echvi_0636at 720.185 kb on + strand, within Echvi_0636at 720.186 kb on - strand, within Echvi_0636at 720.186 kb on - strand, within Echvi_0636at 720.186 kb on - strand, within Echvi_0636at 720.186 kb on - strand, within Echvi_0636at 720.209 kb on + strandat 720.210 kb on - strandat 720.221 kb on + strandat 720.221 kb on + strandat 720.221 kb on + strandat 720.222 kb on - strandat 720.222 kb on - strandat 720.222 kb on - strandat 720.229 kb on + strandat 720.230 kb on - strandat 720.231 kb on + strandat 720.231 kb on + strandat 720.231 kb on + strandat 720.231 kb on + strandat 720.231 kb on + strandat 720.231 kb on + strandat 720.283 kb on + strandat 720.284 kb on - strandat 720.284 kb on - strandat 720.336 kb on + strandat 720.337 kb on - strandat 720.372 kb on - strandat 720.372 kb on - strandat 720.373 kb on + strandat 720.373 kb on + strandat 720.373 kb on + strandat 720.373 kb on + strandat 720.373 kb on + strandat 720.373 kb on + strandat 720.377 kb on + strandat 720.377 kb on + strandat 720.377 kb on + strandat 720.385 kb on - strandat 720.403 kb on + strandat 720.441 kb on - strandat 720.452 kb on + strandat 720.454 kb on + strand, within Echvi_0637at 720.454 kb on + strand, within Echvi_0637at 720.454 kb on + strand, within Echvi_0637at 720.454 kb on + strand, within Echvi_0637at 720.454 kb on + strand, within Echvi_0637at 720.455 kb on - strand, within Echvi_0637at 720.514 kb on + strand, within Echvi_0637at 720.518 kb on + strand, within Echvi_0637at 720.589 kb on + strand, within Echvi_0637at 720.589 kb on + strand, within Echvi_0637at 720.592 kb on + strand, within Echvi_0637at 720.627 kb on - strand, within Echvi_0637at 720.627 kb on - strand, within Echvi_0637at 720.656 kb on - strand, within Echvi_0637at 720.656 kb on - strand, within Echvi_0637at 720.659 kb on - strand, within Echvi_0637at 720.663 kb on - strand, within Echvi_0637at 720.663 kb on - strand, within Echvi_0637at 720.751 kb on - strand, within Echvi_0637at 720.751 kb on - strand, within Echvi_0637at 720.751 kb on - strand, within Echvi_0637at 720.788 kb on + strand, within Echvi_0637at 720.789 kb on - strand, within Echvi_0637at 720.789 kb on - strand, within Echvi_0637at 720.868 kb on + strand, within Echvi_0637at 720.872 kb on - strand, within Echvi_0637at 720.882 kb on + strand, within Echvi_0637at 720.929 kb on + strand, within Echvi_0637at 720.993 kb on - strand, within Echvi_0637at 721.077 kb on - strand, within Echvi_0637at 721.079 kb on + strand, within Echvi_0637at 721.079 kb on + strand, within Echvi_0637at 721.079 kb on + strand, within Echvi_0637at 721.079 kb on + strand, within Echvi_0637at 721.115 kb on + strand, within Echvi_0637at 721.116 kb on - strand, within Echvi_0637at 721.145 kb on + strand, within Echvi_0637at 721.145 kb on + strand, within Echvi_0637at 721.145 kb on + strand, within Echvi_0637at 721.146 kb on - strand, within Echvi_0637at 721.146 kb on - strand, within Echvi_0637at 721.146 kb on - strand, within Echvi_0637at 721.150 kb on - strand, within Echvi_0637

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction a-Cyclodextrin (C)
remove
718,946 + Echvi_0634 0.79 -0.4
718,946 + Echvi_0634 0.79 -1.6
718,947 - Echvi_0634 0.79 -1.1
718,947 - Echvi_0634 0.79 -0.6
718,947 - Echvi_0634 0.79 +0.4
718,947 - Echvi_0634 0.79 -0.6
718,947 - Echvi_0634 0.79 +0.7
718,981 + Echvi_0634 0.81 -0.2
718,982 - Echvi_0634 0.81 +0.8
719,025 - Echvi_0634 0.83 +0.2
719,026 + Echvi_0634 0.83 -0.5
719,038 - Echvi_0634 0.84 -0.2
719,123 + Echvi_0634 0.88 -1.9
719,123 + Echvi_0634 0.88 +1.2
719,125 + Echvi_0634 0.88 -0.6
719,125 + Echvi_0634 0.88 -0.6
719,130 + Echvi_0634 0.88 -1.2
719,220 - +0.2
719,220 - -1.4
719,264 - -0.1
719,281 - +1.3
719,328 + -0.0
719,329 - -0.9
719,353 + +0.4
719,353 + -0.5
719,353 + +0.2
719,354 - -2.5
719,357 + -0.8
719,369 + +2.3
719,369 + -1.0
719,369 + -1.2
719,373 + +0.8
719,374 - -1.4
719,374 - -0.0
719,374 - +0.3
719,374 - -1.4
719,439 + -3.5
719,439 + +0.0
719,439 + -1.2
719,439 + -2.1
719,439 + -2.2
719,439 + -1.9
719,439 + -1.9
719,439 + -1.2
719,440 - -0.3
719,440 - -0.5
719,440 - +1.6
719,453 + -0.1
719,873 + -0.3
719,873 + -2.0
719,912 + Echvi_0636 0.10 +0.4
719,912 + Echvi_0636 0.10 +3.9
719,958 + -0.4
719,959 - Echvi_0636 0.24 +1.1
719,967 + Echvi_0636 0.26 +1.0
719,967 + Echvi_0636 0.26 +2.0
719,968 - Echvi_0636 0.26 +1.1
720,028 + Echvi_0636 0.44 -0.0
720,035 + Echvi_0636 0.46 -0.0
720,036 - Echvi_0636 0.46 +1.2
720,045 + Echvi_0636 0.49 +2.4
720,046 - Echvi_0636 0.49 +0.8
720,062 + Echvi_0636 0.54 +0.7
720,063 - Echvi_0636 0.54 +1.5
720,069 + Echvi_0636 0.56 +0.9
720,069 + Echvi_0636 0.56 +0.3
720,070 - Echvi_0636 0.56 +1.1
720,124 - Echvi_0636 0.72 +0.7
720,124 - Echvi_0636 0.72 +1.6
720,149 + Echvi_0636 0.79 +2.5
720,149 + Echvi_0636 0.79 +0.6
720,185 + Echvi_0636 0.89 +2.1
720,185 + Echvi_0636 0.89 +1.7
720,186 - Echvi_0636 0.90 +0.8
720,186 - Echvi_0636 0.90 +2.0
720,186 - Echvi_0636 0.90 +1.2
720,186 - Echvi_0636 0.90 +0.3
720,209 + +2.2
720,210 - +2.4
720,221 + +2.0
720,221 + +0.6
720,221 + -0.8
720,222 - -0.6
720,222 - +1.6
720,222 - +0.8
720,229 + -0.0
720,230 - +1.3
720,231 + -1.2
720,231 + +0.2
720,231 + +1.0
720,231 + -0.2
720,231 + -0.3
720,231 + +0.5
720,283 + +2.2
720,284 - +3.3
720,284 - -0.3
720,336 + +2.5
720,337 - +1.1
720,372 - -0.2
720,372 - +1.1
720,373 + +0.2
720,373 + +1.2
720,373 + +1.9
720,373 + +1.5
720,373 + +0.7
720,373 + -0.2
720,377 + +0.5
720,377 + -0.4
720,377 + -0.2
720,385 - +1.4
720,403 + +1.1
720,441 - +1.1
720,452 + -0.3
720,454 + Echvi_0637 0.10 +1.0
720,454 + Echvi_0637 0.10 +0.6
720,454 + Echvi_0637 0.10 +1.2
720,454 + Echvi_0637 0.10 +1.1
720,454 + Echvi_0637 0.10 +0.9
720,455 - Echvi_0637 0.10 +1.3
720,514 + Echvi_0637 0.13 +1.2
720,518 + Echvi_0637 0.13 +2.0
720,589 + Echvi_0637 0.17 +0.7
720,589 + Echvi_0637 0.17 +0.5
720,592 + Echvi_0637 0.17 +1.6
720,627 - Echvi_0637 0.18 +0.8
720,627 - Echvi_0637 0.18 -0.6
720,656 - Echvi_0637 0.20 +1.9
720,656 - Echvi_0637 0.20 +1.5
720,659 - Echvi_0637 0.20 +0.3
720,663 - Echvi_0637 0.20 +0.7
720,663 - Echvi_0637 0.20 +1.6
720,751 - Echvi_0637 0.24 +1.1
720,751 - Echvi_0637 0.24 +0.2
720,751 - Echvi_0637 0.24 +1.6
720,788 + Echvi_0637 0.26 +0.9
720,789 - Echvi_0637 0.26 +2.7
720,789 - Echvi_0637 0.26 +0.7
720,868 + Echvi_0637 0.30 +0.5
720,872 - Echvi_0637 0.30 +1.1
720,882 + Echvi_0637 0.31 +0.6
720,929 + Echvi_0637 0.33 -0.8
720,993 - Echvi_0637 0.36 +1.4
721,077 - Echvi_0637 0.40 +1.6
721,079 + Echvi_0637 0.40 +1.3
721,079 + Echvi_0637 0.40 -0.3
721,079 + Echvi_0637 0.40 +0.5
721,079 + Echvi_0637 0.40 +1.3
721,115 + Echvi_0637 0.42 +1.8
721,116 - Echvi_0637 0.42 -1.7
721,145 + Echvi_0637 0.43 +0.9
721,145 + Echvi_0637 0.43 +1.5
721,145 + Echvi_0637 0.43 -0.3
721,146 - Echvi_0637 0.44 -0.4
721,146 - Echvi_0637 0.44 +1.5
721,146 - Echvi_0637 0.44 -0.0
721,150 - Echvi_0637 0.44 +1.0

Or see this region's nucleotide sequence