Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_21150

Experiment: m.b. Spectinomycin 0.08 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_21145 and CA264_21150 are separated by 43 nucleotidesCA264_21150 and CA264_21155 are separated by 118 nucleotidesCA264_21155 and CA264_21160 are separated by 81 nucleotides CA264_21145: CA264_21145 - glucoamylase, at 94,376 to 96,190 _21145 CA264_21150: CA264_21150 - alcohol dehydrogenase, at 96,234 to 97,343 _21150 CA264_21155: CA264_21155 - hypothetical protein, at 97,462 to 97,896 _21155 CA264_21160: CA264_21160 - sodium:calcium exchanger, at 97,978 to 99,357 _21160 Position (kb) 96 97 98Strain fitness (log2 ratio) -2 -1 0 1 2at 95.286 kb on + strand, within CA264_21145at 95.286 kb on + strand, within CA264_21145at 95.286 kb on + strand, within CA264_21145at 95.287 kb on - strand, within CA264_21145at 95.316 kb on - strand, within CA264_21145at 95.411 kb on + strand, within CA264_21145at 95.445 kb on + strand, within CA264_21145at 95.471 kb on - strand, within CA264_21145at 95.471 kb on - strand, within CA264_21145at 95.471 kb on - strand, within CA264_21145at 95.471 kb on - strand, within CA264_21145at 95.493 kb on - strand, within CA264_21145at 95.566 kb on - strand, within CA264_21145at 95.674 kb on + strand, within CA264_21145at 95.793 kb on + strand, within CA264_21145at 95.794 kb on - strand, within CA264_21145at 95.794 kb on - strand, within CA264_21145at 95.916 kb on + strand, within CA264_21145at 95.916 kb on + strand, within CA264_21145at 96.148 kb on + strandat 96.148 kb on + strandat 96.149 kb on - strandat 96.178 kb on + strandat 96.217 kb on + strandat 96.344 kb on + strandat 96.451 kb on + strand, within CA264_21150at 96.463 kb on + strand, within CA264_21150at 96.464 kb on - strand, within CA264_21150at 96.496 kb on + strand, within CA264_21150at 96.570 kb on + strand, within CA264_21150at 96.570 kb on + strand, within CA264_21150at 96.571 kb on - strand, within CA264_21150at 96.571 kb on - strand, within CA264_21150at 96.604 kb on - strand, within CA264_21150at 96.604 kb on - strand, within CA264_21150at 96.616 kb on - strand, within CA264_21150at 96.616 kb on - strand, within CA264_21150at 96.636 kb on + strand, within CA264_21150at 96.636 kb on + strand, within CA264_21150at 96.637 kb on - strand, within CA264_21150at 96.637 kb on - strand, within CA264_21150at 96.661 kb on + strand, within CA264_21150at 96.884 kb on + strand, within CA264_21150at 96.885 kb on - strand, within CA264_21150at 96.929 kb on - strand, within CA264_21150at 96.958 kb on + strand, within CA264_21150at 96.959 kb on - strand, within CA264_21150at 96.959 kb on - strand, within CA264_21150at 96.959 kb on - strand, within CA264_21150at 96.959 kb on - strand, within CA264_21150at 96.986 kb on + strand, within CA264_21150at 96.987 kb on - strand, within CA264_21150at 97.007 kb on - strand, within CA264_21150at 97.007 kb on - strand, within CA264_21150at 97.055 kb on - strand, within CA264_21150at 97.056 kb on + strand, within CA264_21150at 97.056 kb on + strand, within CA264_21150at 97.057 kb on - strand, within CA264_21150at 97.057 kb on - strand, within CA264_21150at 97.100 kb on - strand, within CA264_21150at 97.241 kb on + strandat 97.244 kb on + strandat 97.245 kb on - strandat 97.248 kb on - strandat 97.310 kb on + strandat 97.310 kb on + strandat 97.311 kb on - strandat 97.322 kb on - strandat 97.322 kb on - strandat 97.369 kb on + strandat 97.381 kb on + strandat 97.420 kb on - strandat 97.451 kb on - strandat 97.516 kb on + strand, within CA264_21155at 97.516 kb on + strand, within CA264_21155at 97.517 kb on - strand, within CA264_21155at 97.517 kb on - strand, within CA264_21155at 97.517 kb on - strand, within CA264_21155at 97.553 kb on - strand, within CA264_21155at 97.553 kb on - strand, within CA264_21155at 97.553 kb on - strand, within CA264_21155at 97.653 kb on + strand, within CA264_21155at 97.653 kb on + strand, within CA264_21155at 97.654 kb on - strand, within CA264_21155at 97.654 kb on - strand, within CA264_21155at 97.721 kb on + strand, within CA264_21155at 97.722 kb on - strand, within CA264_21155at 97.722 kb on - strand, within CA264_21155at 97.745 kb on + strand, within CA264_21155at 97.755 kb on + strand, within CA264_21155at 97.796 kb on + strand, within CA264_21155at 97.797 kb on - strand, within CA264_21155at 97.798 kb on + strand, within CA264_21155at 97.799 kb on - strand, within CA264_21155at 97.824 kb on + strand, within CA264_21155at 97.841 kb on - strand, within CA264_21155at 97.861 kb on + strandat 97.880 kb on + strandat 97.880 kb on + strandat 97.881 kb on - strandat 97.881 kb on - strandat 97.882 kb on + strandat 97.912 kb on - strandat 97.927 kb on - strandat 97.936 kb on + strandat 97.938 kb on + strandat 98.012 kb on + strandat 98.012 kb on + strandat 98.013 kb on - strandat 98.013 kb on - strandat 98.020 kb on + strandat 98.110 kb on - strandat 98.143 kb on + strand, within CA264_21160at 98.243 kb on + strand, within CA264_21160at 98.248 kb on + strand, within CA264_21160at 98.248 kb on + strand, within CA264_21160at 98.249 kb on - strand, within CA264_21160at 98.268 kb on - strand, within CA264_21160at 98.288 kb on + strand, within CA264_21160at 98.289 kb on - strand, within CA264_21160at 98.289 kb on - strand, within CA264_21160at 98.299 kb on - strand, within CA264_21160at 98.299 kb on - strand, within CA264_21160at 98.309 kb on + strand, within CA264_21160at 98.317 kb on - strand, within CA264_21160

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Spectinomycin 0.08 mg/ml
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95,286 + CA264_21145 0.50 -1.0
95,286 + CA264_21145 0.50 +0.1
95,286 + CA264_21145 0.50 +0.8
95,287 - CA264_21145 0.50 +0.1
95,316 - CA264_21145 0.52 +0.1
95,411 + CA264_21145 0.57 -2.4
95,445 + CA264_21145 0.59 -1.9
95,471 - CA264_21145 0.60 -1.9
95,471 - CA264_21145 0.60 +0.9
95,471 - CA264_21145 0.60 -1.0
95,471 - CA264_21145 0.60 +0.2
95,493 - CA264_21145 0.62 +0.6
95,566 - CA264_21145 0.66 -1.1
95,674 + CA264_21145 0.72 +0.1
95,793 + CA264_21145 0.78 +1.7
95,794 - CA264_21145 0.78 +0.1
95,794 - CA264_21145 0.78 -0.5
95,916 + CA264_21145 0.85 -0.3
95,916 + CA264_21145 0.85 -0.1
96,148 + -0.3
96,148 + -0.2
96,149 - -0.7
96,178 + -0.1
96,217 + -0.1
96,344 + -0.4
96,451 + CA264_21150 0.20 -0.3
96,463 + CA264_21150 0.21 -0.0
96,464 - CA264_21150 0.21 -0.9
96,496 + CA264_21150 0.24 +0.2
96,570 + CA264_21150 0.30 -0.3
96,570 + CA264_21150 0.30 +0.6
96,571 - CA264_21150 0.30 +0.9
96,571 - CA264_21150 0.30 -0.2
96,604 - CA264_21150 0.33 +0.3
96,604 - CA264_21150 0.33 +2.1
96,616 - CA264_21150 0.34 -0.2
96,616 - CA264_21150 0.34 +0.1
96,636 + CA264_21150 0.36 -1.1
96,636 + CA264_21150 0.36 +0.4
96,637 - CA264_21150 0.36 +0.1
96,637 - CA264_21150 0.36 -0.1
96,661 + CA264_21150 0.38 -0.7
96,884 + CA264_21150 0.59 +0.4
96,885 - CA264_21150 0.59 -0.1
96,929 - CA264_21150 0.63 +0.4
96,958 + CA264_21150 0.65 -0.2
96,959 - CA264_21150 0.65 +0.2
96,959 - CA264_21150 0.65 -0.0
96,959 - CA264_21150 0.65 -0.2
96,959 - CA264_21150 0.65 +0.0
96,986 + CA264_21150 0.68 +0.2
96,987 - CA264_21150 0.68 +0.9
97,007 - CA264_21150 0.70 +0.6
97,007 - CA264_21150 0.70 +0.1
97,055 - CA264_21150 0.74 +0.6
97,056 + CA264_21150 0.74 -0.3
97,056 + CA264_21150 0.74 +2.7
97,057 - CA264_21150 0.74 +0.1
97,057 - CA264_21150 0.74 +0.5
97,100 - CA264_21150 0.78 +0.6
97,241 + +0.1
97,244 + +1.0
97,245 - -0.0
97,248 - -0.9
97,310 + +0.1
97,310 + +0.1
97,311 - -0.0
97,322 - -0.0
97,322 - -0.4
97,369 + +0.3
97,381 + +1.0
97,420 - -0.3
97,451 - -0.5
97,516 + CA264_21155 0.12 +0.7
97,516 + CA264_21155 0.12 +0.8
97,517 - CA264_21155 0.13 -0.3
97,517 - CA264_21155 0.13 -0.2
97,517 - CA264_21155 0.13 +0.3
97,553 - CA264_21155 0.21 +0.1
97,553 - CA264_21155 0.21 +0.1
97,553 - CA264_21155 0.21 -0.1
97,653 + CA264_21155 0.44 +0.0
97,653 + CA264_21155 0.44 -0.3
97,654 - CA264_21155 0.44 +0.0
97,654 - CA264_21155 0.44 -0.1
97,721 + CA264_21155 0.60 -0.4
97,722 - CA264_21155 0.60 -0.4
97,722 - CA264_21155 0.60 +0.1
97,745 + CA264_21155 0.65 +0.3
97,755 + CA264_21155 0.67 +0.3
97,796 + CA264_21155 0.77 +0.4
97,797 - CA264_21155 0.77 +0.0
97,798 + CA264_21155 0.77 -0.0
97,799 - CA264_21155 0.77 +0.3
97,824 + CA264_21155 0.83 -0.2
97,841 - CA264_21155 0.87 +0.1
97,861 + +0.2
97,880 + +0.3
97,880 + -0.4
97,881 - -0.4
97,881 - +0.7
97,882 + +0.8
97,912 - +0.0
97,927 - +0.4
97,936 + +0.4
97,938 + -2.4
98,012 + -0.4
98,012 + -0.3
98,013 - +0.6
98,013 - -0.9
98,020 + +0.2
98,110 - -0.6
98,143 + CA264_21160 0.12 -0.2
98,243 + CA264_21160 0.19 -0.6
98,248 + CA264_21160 0.20 -0.4
98,248 + CA264_21160 0.20 -0.5
98,249 - CA264_21160 0.20 -0.4
98,268 - CA264_21160 0.21 -0.7
98,288 + CA264_21160 0.22 -0.3
98,289 - CA264_21160 0.23 +0.9
98,289 - CA264_21160 0.23 -0.5
98,299 - CA264_21160 0.23 -0.3
98,299 - CA264_21160 0.23 +0.8
98,309 + CA264_21160 0.24 -1.3
98,317 - CA264_21160 0.25 +1.1

Or see this region's nucleotide sequence