Experiment: m.b. Spectinomycin 0.08 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_20675 and CA264_20680 are separated by 62 nucleotides CA264_20680 and CA264_20685 are separated by 138 nucleotides CA264_20685 and CA264_20690 are separated by 218 nucleotides
CA264_20675: CA264_20675 - trehalase, at 4,759,738 to 4,761,375
_20675
CA264_20680: CA264_20680 - hypothetical protein, at 4,761,438 to 4,761,833
_20680
CA264_20685: CA264_20685 - transposase, at 4,761,972 to 4,762,514
_20685
CA264_20690: CA264_20690 - methylmalonyl-CoA mutase, at 4,762,733 to 4,764,877
_20690
Position (kb)
4761
4762 Strain fitness (log2 ratio)
-1
0
1
2 at 4760.448 kb on + strand, within CA264_20675 at 4760.449 kb on - strand, within CA264_20675 at 4760.492 kb on - strand, within CA264_20675 at 4760.492 kb on - strand, within CA264_20675 at 4760.544 kb on - strand, within CA264_20675 at 4760.706 kb on + strand, within CA264_20675 at 4760.748 kb on + strand, within CA264_20675 at 4760.748 kb on + strand, within CA264_20675 at 4760.749 kb on - strand, within CA264_20675 at 4760.757 kb on - strand, within CA264_20675 at 4760.757 kb on - strand, within CA264_20675 at 4760.786 kb on + strand, within CA264_20675 at 4760.787 kb on - strand, within CA264_20675 at 4760.806 kb on + strand, within CA264_20675 at 4760.807 kb on - strand, within CA264_20675 at 4760.851 kb on - strand, within CA264_20675 at 4760.891 kb on - strand, within CA264_20675 at 4760.898 kb on + strand, within CA264_20675 at 4760.899 kb on - strand, within CA264_20675 at 4760.919 kb on - strand, within CA264_20675 at 4760.949 kb on + strand, within CA264_20675 at 4760.950 kb on - strand, within CA264_20675 at 4760.950 kb on - strand, within CA264_20675 at 4760.950 kb on - strand, within CA264_20675 at 4760.950 kb on - strand, within CA264_20675 at 4760.950 kb on - strand, within CA264_20675 at 4760.950 kb on - strand, within CA264_20675 at 4761.004 kb on - strand, within CA264_20675 at 4761.007 kb on + strand, within CA264_20675 at 4761.025 kb on + strand, within CA264_20675 at 4761.025 kb on + strand, within CA264_20675 at 4761.026 kb on - strand, within CA264_20675 at 4761.061 kb on - strand, within CA264_20675 at 4761.086 kb on - strand, within CA264_20675 at 4761.126 kb on + strand, within CA264_20675 at 4761.126 kb on + strand, within CA264_20675 at 4761.126 kb on + strand, within CA264_20675 at 4761.126 kb on + strand, within CA264_20675 at 4761.127 kb on - strand, within CA264_20675 at 4761.127 kb on - strand, within CA264_20675 at 4761.232 kb on + strand at 4761.272 kb on + strand at 4761.273 kb on - strand at 4761.357 kb on - strand at 4761.376 kb on - strand at 4761.434 kb on + strand at 4761.435 kb on - strand at 4761.435 kb on - strand at 4761.435 kb on - strand at 4761.437 kb on - strand at 4761.439 kb on + strand at 4761.440 kb on - strand at 4761.440 kb on - strand at 4761.440 kb on - strand at 4761.503 kb on + strand, within CA264_20680 at 4761.505 kb on + strand, within CA264_20680 at 4761.505 kb on + strand, within CA264_20680 at 4761.584 kb on - strand, within CA264_20680 at 4761.584 kb on - strand, within CA264_20680 at 4761.601 kb on + strand, within CA264_20680 at 4761.620 kb on + strand, within CA264_20680 at 4761.648 kb on + strand, within CA264_20680 at 4761.673 kb on + strand, within CA264_20680 at 4761.674 kb on - strand, within CA264_20680 at 4761.728 kb on + strand, within CA264_20680 at 4761.751 kb on - strand, within CA264_20680 at 4761.799 kb on - strand at 4761.826 kb on - strand at 4761.826 kb on - strand at 4761.826 kb on - strand at 4761.844 kb on - strand at 4761.844 kb on - strand at 4761.851 kb on + strand at 4761.859 kb on + strand at 4761.921 kb on + strand at 4761.922 kb on - strand at 4761.922 kb on - strand at 4761.922 kb on - strand at 4761.966 kb on - strand at 4761.974 kb on - strand at 4761.986 kb on + strand at 4761.987 kb on - strand at 4762.129 kb on - strand, within CA264_20685 at 4762.129 kb on - strand, within CA264_20685 at 4762.160 kb on + strand, within CA264_20685 at 4762.161 kb on - strand, within CA264_20685 at 4762.181 kb on + strand, within CA264_20685 at 4762.203 kb on + strand, within CA264_20685 at 4762.203 kb on + strand, within CA264_20685 at 4762.258 kb on + strand, within CA264_20685 at 4762.259 kb on - strand, within CA264_20685 at 4762.261 kb on - strand, within CA264_20685 at 4762.296 kb on - strand, within CA264_20685 at 4762.360 kb on + strand, within CA264_20685 at 4762.361 kb on - strand, within CA264_20685 at 4762.368 kb on + strand, within CA264_20685 at 4762.390 kb on + strand, within CA264_20685 at 4762.437 kb on + strand, within CA264_20685 at 4762.467 kb on - strand at 4762.475 kb on - strand at 4762.502 kb on - strand at 4762.516 kb on + strand at 4762.517 kb on - strand at 4762.517 kb on - strand at 4762.517 kb on - strand at 4762.517 kb on - strand at 4762.521 kb on - strand at 4762.541 kb on - strand at 4762.541 kb on - strand at 4762.542 kb on + strand at 4762.542 kb on + strand at 4762.543 kb on - strand at 4762.582 kb on + strand at 4762.640 kb on - strand at 4762.641 kb on + strand at 4762.641 kb on + strand at 4762.680 kb on + strand at 4762.681 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Spectinomycin 0.08 mg/ml remove 4,760,448 + CA264_20675 0.43 +2.0 4,760,449 - CA264_20675 0.43 -0.4 4,760,492 - CA264_20675 0.46 -1.2 4,760,492 - CA264_20675 0.46 +0.2 4,760,544 - CA264_20675 0.49 +0.7 4,760,706 + CA264_20675 0.59 +0.0 4,760,748 + CA264_20675 0.62 -0.6 4,760,748 + CA264_20675 0.62 -0.9 4,760,749 - CA264_20675 0.62 +0.3 4,760,757 - CA264_20675 0.62 +0.0 4,760,757 - CA264_20675 0.62 -0.2 4,760,786 + CA264_20675 0.64 -0.7 4,760,787 - CA264_20675 0.64 +0.4 4,760,806 + CA264_20675 0.65 +0.4 4,760,807 - CA264_20675 0.65 -0.3 4,760,851 - CA264_20675 0.68 +0.0 4,760,891 - CA264_20675 0.70 +0.2 4,760,898 + CA264_20675 0.71 -0.2 4,760,899 - CA264_20675 0.71 +0.0 4,760,919 - CA264_20675 0.72 +1.7 4,760,949 + CA264_20675 0.74 +0.0 4,760,950 - CA264_20675 0.74 -0.0 4,760,950 - CA264_20675 0.74 -1.5 4,760,950 - CA264_20675 0.74 -0.1 4,760,950 - CA264_20675 0.74 +0.2 4,760,950 - CA264_20675 0.74 +1.8 4,760,950 - CA264_20675 0.74 -1.5 4,761,004 - CA264_20675 0.77 -0.8 4,761,007 + CA264_20675 0.77 +0.2 4,761,025 + CA264_20675 0.79 +0.1 4,761,025 + CA264_20675 0.79 +0.6 4,761,026 - CA264_20675 0.79 -1.3 4,761,061 - CA264_20675 0.81 +0.5 4,761,086 - CA264_20675 0.82 -0.2 4,761,126 + CA264_20675 0.85 -0.0 4,761,126 + CA264_20675 0.85 -0.1 4,761,126 + CA264_20675 0.85 +0.8 4,761,126 + CA264_20675 0.85 -0.1 4,761,127 - CA264_20675 0.85 -0.2 4,761,127 - CA264_20675 0.85 -0.5 4,761,232 + -0.7 4,761,272 + -0.6 4,761,273 - -0.3 4,761,357 - +0.8 4,761,376 - +0.8 4,761,434 + -0.1 4,761,435 - +0.4 4,761,435 - +0.8 4,761,435 - +0.2 4,761,437 - +0.1 4,761,439 + +0.0 4,761,440 - +0.3 4,761,440 - +0.1 4,761,440 - +0.2 4,761,503 + CA264_20680 0.16 +0.3 4,761,505 + CA264_20680 0.17 -0.5 4,761,505 + CA264_20680 0.17 +0.6 4,761,584 - CA264_20680 0.37 +0.3 4,761,584 - CA264_20680 0.37 -0.2 4,761,601 + CA264_20680 0.41 -0.5 4,761,620 + CA264_20680 0.46 +1.4 4,761,648 + CA264_20680 0.53 +0.1 4,761,673 + CA264_20680 0.59 -0.4 4,761,674 - CA264_20680 0.60 +0.6 4,761,728 + CA264_20680 0.73 -0.1 4,761,751 - CA264_20680 0.79 -0.1 4,761,799 - +1.0 4,761,826 - +0.5 4,761,826 - -0.2 4,761,826 - +0.5 4,761,844 - -0.0 4,761,844 - -0.4 4,761,851 + -1.2 4,761,859 + -0.0 4,761,921 + +0.6 4,761,922 - +0.5 4,761,922 - -0.2 4,761,922 - +0.7 4,761,966 - +1.3 4,761,974 - +1.3 4,761,986 + +0.3 4,761,987 - +1.1 4,762,129 - CA264_20685 0.29 +0.4 4,762,129 - CA264_20685 0.29 -0.1 4,762,160 + CA264_20685 0.35 +1.3 4,762,161 - CA264_20685 0.35 -0.5 4,762,181 + CA264_20685 0.38 -0.3 4,762,203 + CA264_20685 0.43 +0.4 4,762,203 + CA264_20685 0.43 -0.2 4,762,258 + CA264_20685 0.53 +0.9 4,762,259 - CA264_20685 0.53 +0.1 4,762,261 - CA264_20685 0.53 -0.5 4,762,296 - CA264_20685 0.60 +1.1 4,762,360 + CA264_20685 0.71 -0.3 4,762,361 - CA264_20685 0.72 +0.6 4,762,368 + CA264_20685 0.73 -0.1 4,762,390 + CA264_20685 0.77 +0.1 4,762,437 + CA264_20685 0.86 +1.8 4,762,467 - +0.3 4,762,475 - +0.3 4,762,502 - -0.3 4,762,516 + -0.2 4,762,517 - -0.6 4,762,517 - +0.1 4,762,517 - +0.2 4,762,517 - +0.0 4,762,521 - +1.4 4,762,541 - +0.7 4,762,541 - -0.1 4,762,542 + +0.5 4,762,542 + -0.1 4,762,543 - +0.3 4,762,582 + +1.0 4,762,640 - +1.3 4,762,641 + -0.2 4,762,641 + +0.7 4,762,680 + +0.5 4,762,681 - -0.6
Or see this region's nucleotide sequence