Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_18305

Experiment: m.b. Spectinomycin 0.08 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_18300 and CA264_18305 are separated by 108 nucleotidesCA264_18305 and CA264_18310 are separated by 307 nucleotidesCA264_18310 and CA264_18315 are separated by 429 nucleotides CA264_18300: CA264_18300 - peptidase M28, at 4,255,782 to 4,257,338 _18300 CA264_18305: CA264_18305 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, at 4,257,447 to 4,257,932 _18305 CA264_18310: CA264_18310 - hypothetical protein, at 4,258,240 to 4,258,374 _18310 CA264_18315: CA264_18315 - alkene reductase, at 4,258,804 to 4,259,907 _18315 Position (kb) 4257 4258Strain fitness (log2 ratio) -2 -1 0 1at 4256.479 kb on + strand, within CA264_18300at 4256.655 kb on + strand, within CA264_18300at 4256.755 kb on + strand, within CA264_18300at 4256.755 kb on + strand, within CA264_18300at 4256.756 kb on - strand, within CA264_18300at 4256.756 kb on - strand, within CA264_18300at 4256.844 kb on + strand, within CA264_18300at 4256.862 kb on + strand, within CA264_18300at 4256.863 kb on - strand, within CA264_18300at 4256.877 kb on + strand, within CA264_18300at 4256.878 kb on - strand, within CA264_18300at 4256.899 kb on + strand, within CA264_18300at 4256.900 kb on - strand, within CA264_18300at 4256.901 kb on + strand, within CA264_18300at 4256.902 kb on - strand, within CA264_18300at 4257.140 kb on + strand, within CA264_18300at 4257.141 kb on - strand, within CA264_18300at 4257.143 kb on + strand, within CA264_18300at 4257.143 kb on + strand, within CA264_18300at 4257.143 kb on + strand, within CA264_18300at 4257.171 kb on - strand, within CA264_18300at 4257.330 kb on - strandat 4257.338 kb on + strandat 4257.338 kb on + strandat 4257.339 kb on - strandat 4257.391 kb on - strandat 4257.445 kb on + strandat 4257.449 kb on - strandat 4257.449 kb on - strandat 4257.449 kb on - strandat 4257.449 kb on - strandat 4257.945 kb on - strandat 4257.945 kb on - strandat 4257.945 kb on - strandat 4257.948 kb on + strandat 4257.948 kb on + strandat 4257.948 kb on + strandat 4257.948 kb on + strandat 4257.948 kb on + strandat 4257.949 kb on - strandat 4257.949 kb on - strandat 4257.949 kb on - strandat 4257.949 kb on - strandat 4257.949 kb on - strandat 4257.955 kb on + strandat 4257.955 kb on + strandat 4257.955 kb on + strandat 4257.958 kb on + strandat 4257.992 kb on + strandat 4257.992 kb on + strandat 4257.993 kb on - strandat 4257.993 kb on - strandat 4257.996 kb on + strandat 4257.997 kb on - strandat 4258.008 kb on - strandat 4258.019 kb on + strandat 4258.019 kb on + strandat 4258.019 kb on + strandat 4258.020 kb on - strandat 4258.043 kb on + strandat 4258.062 kb on - strandat 4258.066 kb on + strandat 4258.151 kb on - strandat 4258.173 kb on + strandat 4258.235 kb on + strandat 4258.235 kb on + strandat 4258.236 kb on - strandat 4258.373 kb on - strandat 4258.385 kb on - strandat 4258.388 kb on + strandat 4258.413 kb on - strandat 4258.432 kb on - strandat 4258.432 kb on - strandat 4258.435 kb on + strandat 4258.436 kb on - strandat 4258.437 kb on + strandat 4258.437 kb on + strandat 4258.437 kb on + strandat 4258.438 kb on - strandat 4258.506 kb on + strandat 4258.507 kb on - strandat 4258.507 kb on - strandat 4258.548 kb on + strandat 4258.658 kb on + strandat 4258.659 kb on - strandat 4258.659 kb on - strandat 4258.663 kb on - strandat 4258.704 kb on + strandat 4258.704 kb on + strandat 4258.705 kb on - strandat 4258.706 kb on + strandat 4258.707 kb on - strandat 4258.722 kb on + strandat 4258.723 kb on - strandat 4258.782 kb on + strandat 4258.783 kb on - strandat 4258.784 kb on + strandat 4258.787 kb on - strandat 4258.841 kb on + strandat 4258.869 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Spectinomycin 0.08 mg/ml
remove
4,256,479 + CA264_18300 0.45 -0.9
4,256,655 + CA264_18300 0.56 -0.4
4,256,755 + CA264_18300 0.62 -1.3
4,256,755 + CA264_18300 0.62 -0.8
4,256,756 - CA264_18300 0.63 +0.8
4,256,756 - CA264_18300 0.63 -0.7
4,256,844 + CA264_18300 0.68 -1.3
4,256,862 + CA264_18300 0.69 -1.3
4,256,863 - CA264_18300 0.69 -0.4
4,256,877 + CA264_18300 0.70 -0.9
4,256,878 - CA264_18300 0.70 +1.0
4,256,899 + CA264_18300 0.72 +0.6
4,256,900 - CA264_18300 0.72 -0.4
4,256,901 + CA264_18300 0.72 -0.5
4,256,902 - CA264_18300 0.72 -1.0
4,257,140 + CA264_18300 0.87 -0.8
4,257,141 - CA264_18300 0.87 +0.1
4,257,143 + CA264_18300 0.87 -0.2
4,257,143 + CA264_18300 0.87 -0.4
4,257,143 + CA264_18300 0.87 +0.8
4,257,171 - CA264_18300 0.89 -0.0
4,257,330 - +0.5
4,257,338 + +1.0
4,257,338 + -0.4
4,257,339 - -0.5
4,257,391 - -0.6
4,257,445 + -0.2
4,257,449 - -0.3
4,257,449 - -0.4
4,257,449 - -0.7
4,257,449 - -1.8
4,257,945 - -1.1
4,257,945 - -1.4
4,257,945 - -0.1
4,257,948 + -0.0
4,257,948 + +0.2
4,257,948 + -0.1
4,257,948 + -0.0
4,257,948 + -1.1
4,257,949 - -0.7
4,257,949 - -0.9
4,257,949 - -0.3
4,257,949 - +0.2
4,257,949 - -1.5
4,257,955 + -0.0
4,257,955 + -0.9
4,257,955 + -0.6
4,257,958 + -1.0
4,257,992 + -1.1
4,257,992 + +0.6
4,257,993 - -1.1
4,257,993 - -1.7
4,257,996 + -0.7
4,257,997 - -0.4
4,258,008 - -0.7
4,258,019 + -2.1
4,258,019 + -0.8
4,258,019 + -0.4
4,258,020 - -1.2
4,258,043 + -0.7
4,258,062 - -0.9
4,258,066 + +0.5
4,258,151 - -0.5
4,258,173 + -1.6
4,258,235 + -1.2
4,258,235 + +0.6
4,258,236 - -1.7
4,258,373 - -0.4
4,258,385 - -0.5
4,258,388 + -0.2
4,258,413 - -1.6
4,258,432 - -0.1
4,258,432 - +0.6
4,258,435 + -0.2
4,258,436 - -0.4
4,258,437 + -0.5
4,258,437 + +1.2
4,258,437 + -0.2
4,258,438 - -0.6
4,258,506 + +0.2
4,258,507 - -0.1
4,258,507 - -1.4
4,258,548 + -1.2
4,258,658 + +0.8
4,258,659 - -0.2
4,258,659 - -0.1
4,258,663 - +0.8
4,258,704 + -0.5
4,258,704 + +0.9
4,258,705 - -0.3
4,258,706 + -0.5
4,258,707 - -0.6
4,258,722 + +0.8
4,258,723 - +0.0
4,258,782 + -1.2
4,258,783 - -0.7
4,258,784 + +0.9
4,258,787 - +0.2
4,258,841 + -0.0
4,258,869 + -0.2

Or see this region's nucleotide sequence