Experiment: m.b. Spectinomycin 0.08 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_17315 and CA264_17320 are separated by 876 nucleotides CA264_17320 and CA264_17325 overlap by 23 nucleotides
CA264_17315: CA264_17315 - glycine--tRNA ligase, at 4,031,427 to 4,032,929
_17315
CA264_17320: CA264_17320 - hypothetical protein, at 4,033,806 to 4,036,313
_17320
CA264_17325: CA264_17325 - isoleucine--tRNA ligase, at 4,036,291 to 4,039,644
_17325
Position (kb)
4033
4034
4035
4036
4037 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4032.928 kb on - strand at 4032.932 kb on - strand at 4032.934 kb on - strand at 4032.937 kb on + strand at 4032.939 kb on + strand at 4032.954 kb on + strand at 4032.954 kb on + strand at 4033.101 kb on + strand at 4033.121 kb on + strand at 4033.163 kb on - strand at 4033.165 kb on + strand at 4033.172 kb on - strand at 4033.175 kb on + strand at 4033.268 kb on + strand at 4033.269 kb on - strand at 4033.269 kb on - strand at 4033.312 kb on - strand at 4033.334 kb on + strand at 4033.334 kb on + strand at 4033.348 kb on - strand at 4033.380 kb on - strand at 4033.380 kb on - strand at 4033.380 kb on - strand at 4033.456 kb on + strand at 4033.460 kb on + strand at 4033.545 kb on - strand at 4033.639 kb on + strand at 4033.734 kb on + strand at 4033.734 kb on + strand at 4033.735 kb on - strand at 4033.735 kb on - strand at 4033.757 kb on + strand at 4033.758 kb on - strand at 4033.814 kb on + strand at 4033.841 kb on + strand at 4033.883 kb on + strand at 4033.891 kb on - strand at 4033.891 kb on - strand at 4033.906 kb on + strand at 4033.907 kb on - strand at 4033.977 kb on - strand at 4034.038 kb on - strand at 4034.055 kb on - strand at 4034.055 kb on - strand at 4034.092 kb on + strand, within CA264_17320 at 4034.093 kb on - strand, within CA264_17320 at 4034.093 kb on - strand, within CA264_17320 at 4034.102 kb on - strand, within CA264_17320 at 4034.110 kb on + strand, within CA264_17320 at 4034.111 kb on - strand, within CA264_17320 at 4034.166 kb on - strand, within CA264_17320 at 4034.306 kb on - strand, within CA264_17320 at 4034.354 kb on + strand, within CA264_17320 at 4034.354 kb on + strand, within CA264_17320 at 4034.355 kb on - strand, within CA264_17320 at 4034.356 kb on + strand, within CA264_17320 at 4034.357 kb on - strand, within CA264_17320 at 4034.395 kb on + strand, within CA264_17320 at 4034.449 kb on + strand, within CA264_17320 at 4034.501 kb on + strand, within CA264_17320 at 4034.502 kb on - strand, within CA264_17320 at 4034.611 kb on + strand, within CA264_17320 at 4034.629 kb on + strand, within CA264_17320 at 4034.630 kb on - strand, within CA264_17320 at 4034.632 kb on + strand, within CA264_17320 at 4034.633 kb on - strand, within CA264_17320 at 4034.633 kb on - strand, within CA264_17320 at 4034.639 kb on + strand, within CA264_17320 at 4034.640 kb on - strand, within CA264_17320 at 4034.640 kb on - strand, within CA264_17320 at 4034.640 kb on - strand, within CA264_17320 at 4034.673 kb on + strand, within CA264_17320 at 4034.673 kb on + strand, within CA264_17320 at 4034.673 kb on + strand, within CA264_17320 at 4034.673 kb on + strand, within CA264_17320 at 4034.674 kb on - strand, within CA264_17320 at 4034.674 kb on - strand, within CA264_17320 at 4034.674 kb on - strand, within CA264_17320 at 4034.674 kb on - strand, within CA264_17320 at 4034.677 kb on + strand, within CA264_17320 at 4034.677 kb on + strand, within CA264_17320 at 4034.717 kb on + strand, within CA264_17320 at 4034.718 kb on - strand, within CA264_17320 at 4034.743 kb on + strand, within CA264_17320 at 4034.780 kb on + strand, within CA264_17320 at 4034.781 kb on - strand, within CA264_17320 at 4034.807 kb on + strand, within CA264_17320 at 4034.807 kb on + strand, within CA264_17320 at 4034.808 kb on - strand, within CA264_17320 at 4034.819 kb on + strand, within CA264_17320 at 4034.827 kb on + strand, within CA264_17320 at 4034.827 kb on + strand, within CA264_17320 at 4034.828 kb on - strand, within CA264_17320 at 4034.832 kb on + strand, within CA264_17320 at 4034.833 kb on - strand, within CA264_17320 at 4034.877 kb on - strand, within CA264_17320 at 4034.880 kb on - strand, within CA264_17320 at 4034.880 kb on - strand, within CA264_17320 at 4034.881 kb on + strand, within CA264_17320 at 4034.882 kb on - strand, within CA264_17320 at 4034.882 kb on - strand, within CA264_17320 at 4034.882 kb on - strand, within CA264_17320 at 4035.021 kb on + strand, within CA264_17320 at 4035.021 kb on + strand, within CA264_17320 at 4035.039 kb on - strand, within CA264_17320 at 4035.041 kb on - strand, within CA264_17320 at 4035.066 kb on + strand, within CA264_17320 at 4035.066 kb on + strand, within CA264_17320 at 4035.067 kb on - strand, within CA264_17320 at 4035.087 kb on + strand, within CA264_17320 at 4035.087 kb on + strand, within CA264_17320 at 4035.088 kb on - strand, within CA264_17320 at 4035.088 kb on - strand, within CA264_17320 at 4035.088 kb on - strand, within CA264_17320 at 4035.088 kb on - strand, within CA264_17320 at 4035.272 kb on - strand, within CA264_17320 at 4035.285 kb on - strand, within CA264_17320 at 4035.365 kb on + strand, within CA264_17320 at 4035.394 kb on + strand, within CA264_17320 at 4035.395 kb on - strand, within CA264_17320 at 4035.476 kb on - strand, within CA264_17320 at 4035.490 kb on + strand, within CA264_17320 at 4035.491 kb on - strand, within CA264_17320 at 4035.491 kb on - strand, within CA264_17320 at 4035.530 kb on + strand, within CA264_17320 at 4035.590 kb on + strand, within CA264_17320 at 4035.701 kb on + strand, within CA264_17320 at 4035.727 kb on + strand, within CA264_17320 at 4035.752 kb on + strand, within CA264_17320 at 4035.753 kb on - strand, within CA264_17320 at 4035.767 kb on - strand, within CA264_17320 at 4035.797 kb on - strand, within CA264_17320 at 4035.807 kb on - strand, within CA264_17320 at 4035.854 kb on + strand, within CA264_17320 at 4035.854 kb on + strand, within CA264_17320 at 4035.863 kb on - strand, within CA264_17320 at 4035.874 kb on + strand, within CA264_17320 at 4035.874 kb on + strand, within CA264_17320 at 4035.874 kb on + strand, within CA264_17320 at 4035.875 kb on - strand, within CA264_17320 at 4035.921 kb on + strand, within CA264_17320 at 4035.923 kb on + strand, within CA264_17320 at 4035.923 kb on + strand, within CA264_17320 at 4035.924 kb on - strand, within CA264_17320 at 4035.924 kb on - strand, within CA264_17320 at 4036.012 kb on - strand, within CA264_17320 at 4036.081 kb on + strand at 4036.082 kb on - strand at 4036.136 kb on + strand at 4036.136 kb on + strand at 4036.137 kb on - strand at 4036.137 kb on - strand at 4036.167 kb on + strand at 4036.167 kb on + strand at 4036.167 kb on + strand at 4036.171 kb on + strand at 4036.171 kb on + strand at 4036.171 kb on + strand at 4036.172 kb on - strand at 4036.172 kb on - strand at 4036.172 kb on - strand at 4036.172 kb on - strand at 4036.264 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Spectinomycin 0.08 mg/ml remove 4,032,928 - +1.5 4,032,932 - +1.3 4,032,934 - +0.6 4,032,937 + -0.5 4,032,939 + -0.3 4,032,954 + -0.8 4,032,954 + -0.3 4,033,101 + -0.1 4,033,121 + +0.1 4,033,163 - -0.0 4,033,165 + -1.3 4,033,172 - +0.3 4,033,175 + +0.2 4,033,268 + +1.2 4,033,269 - -0.8 4,033,269 - -0.4 4,033,312 - -0.5 4,033,334 + -0.3 4,033,334 + +2.2 4,033,348 - -0.3 4,033,380 - +0.1 4,033,380 - -0.7 4,033,380 - -0.4 4,033,456 + -0.8 4,033,460 + +1.2 4,033,545 - -0.9 4,033,639 + -0.0 4,033,734 + -0.1 4,033,734 + +0.2 4,033,735 - +0.6 4,033,735 - +0.6 4,033,757 + +0.5 4,033,758 - +0.4 4,033,814 + -0.1 4,033,841 + +0.8 4,033,883 + +0.1 4,033,891 - -0.0 4,033,891 - +0.5 4,033,906 + +0.0 4,033,907 - -0.2 4,033,977 - -0.4 4,034,038 - -0.3 4,034,055 - +0.2 4,034,055 - -0.4 4,034,092 + CA264_17320 0.11 +2.8 4,034,093 - CA264_17320 0.11 -0.1 4,034,093 - CA264_17320 0.11 -3.1 4,034,102 - CA264_17320 0.12 -0.4 4,034,110 + CA264_17320 0.12 -0.2 4,034,111 - CA264_17320 0.12 +0.1 4,034,166 - CA264_17320 0.14 -0.1 4,034,306 - CA264_17320 0.20 +0.7 4,034,354 + CA264_17320 0.22 +0.2 4,034,354 + CA264_17320 0.22 -0.0 4,034,355 - CA264_17320 0.22 -0.4 4,034,356 + CA264_17320 0.22 -1.2 4,034,357 - CA264_17320 0.22 -0.3 4,034,395 + CA264_17320 0.23 +2.0 4,034,449 + CA264_17320 0.26 -1.0 4,034,501 + CA264_17320 0.28 -0.2 4,034,502 - CA264_17320 0.28 -1.0 4,034,611 + CA264_17320 0.32 +1.6 4,034,629 + CA264_17320 0.33 +0.2 4,034,630 - CA264_17320 0.33 +1.0 4,034,632 + CA264_17320 0.33 -1.0 4,034,633 - CA264_17320 0.33 +2.5 4,034,633 - CA264_17320 0.33 +0.1 4,034,639 + CA264_17320 0.33 -0.9 4,034,640 - CA264_17320 0.33 -1.3 4,034,640 - CA264_17320 0.33 +1.0 4,034,640 - CA264_17320 0.33 -0.4 4,034,673 + CA264_17320 0.35 +1.1 4,034,673 + CA264_17320 0.35 +0.6 4,034,673 + CA264_17320 0.35 -0.6 4,034,673 + CA264_17320 0.35 +0.0 4,034,674 - CA264_17320 0.35 +0.6 4,034,674 - CA264_17320 0.35 +1.1 4,034,674 - CA264_17320 0.35 +0.4 4,034,674 - CA264_17320 0.35 -0.6 4,034,677 + CA264_17320 0.35 -0.2 4,034,677 + CA264_17320 0.35 +0.9 4,034,717 + CA264_17320 0.36 +0.1 4,034,718 - CA264_17320 0.36 -0.1 4,034,743 + CA264_17320 0.37 +0.5 4,034,780 + CA264_17320 0.39 +0.5 4,034,781 - CA264_17320 0.39 +0.3 4,034,807 + CA264_17320 0.40 -0.8 4,034,807 + CA264_17320 0.40 -1.1 4,034,808 - CA264_17320 0.40 +0.5 4,034,819 + CA264_17320 0.40 -0.4 4,034,827 + CA264_17320 0.41 -1.5 4,034,827 + CA264_17320 0.41 +0.4 4,034,828 - CA264_17320 0.41 +0.8 4,034,832 + CA264_17320 0.41 -0.3 4,034,833 - CA264_17320 0.41 +0.1 4,034,877 - CA264_17320 0.43 -0.7 4,034,880 - CA264_17320 0.43 -0.5 4,034,880 - CA264_17320 0.43 -0.5 4,034,881 + CA264_17320 0.43 +0.2 4,034,882 - CA264_17320 0.43 +0.7 4,034,882 - CA264_17320 0.43 +0.9 4,034,882 - CA264_17320 0.43 +0.8 4,035,021 + CA264_17320 0.48 -0.8 4,035,021 + CA264_17320 0.48 +0.3 4,035,039 - CA264_17320 0.49 +0.2 4,035,041 - CA264_17320 0.49 +0.4 4,035,066 + CA264_17320 0.50 +0.1 4,035,066 + CA264_17320 0.50 -0.8 4,035,067 - CA264_17320 0.50 -0.2 4,035,087 + CA264_17320 0.51 -1.2 4,035,087 + CA264_17320 0.51 -0.2 4,035,088 - CA264_17320 0.51 -0.1 4,035,088 - CA264_17320 0.51 -0.3 4,035,088 - CA264_17320 0.51 +0.6 4,035,088 - CA264_17320 0.51 -0.4 4,035,272 - CA264_17320 0.58 +1.7 4,035,285 - CA264_17320 0.59 -0.2 4,035,365 + CA264_17320 0.62 -0.4 4,035,394 + CA264_17320 0.63 -0.3 4,035,395 - CA264_17320 0.63 -0.2 4,035,476 - CA264_17320 0.67 -0.2 4,035,490 + CA264_17320 0.67 -0.5 4,035,491 - CA264_17320 0.67 -0.2 4,035,491 - CA264_17320 0.67 -0.4 4,035,530 + CA264_17320 0.69 -1.3 4,035,590 + CA264_17320 0.71 -1.2 4,035,701 + CA264_17320 0.76 -0.2 4,035,727 + CA264_17320 0.77 -0.1 4,035,752 + CA264_17320 0.78 -0.5 4,035,753 - CA264_17320 0.78 -0.0 4,035,767 - CA264_17320 0.78 +0.2 4,035,797 - CA264_17320 0.79 +0.2 4,035,807 - CA264_17320 0.80 +0.2 4,035,854 + CA264_17320 0.82 -0.6 4,035,854 + CA264_17320 0.82 -0.1 4,035,863 - CA264_17320 0.82 +2.2 4,035,874 + CA264_17320 0.82 +0.5 4,035,874 + CA264_17320 0.82 -0.6 4,035,874 + CA264_17320 0.82 -1.3 4,035,875 - CA264_17320 0.82 +1.3 4,035,921 + CA264_17320 0.84 -0.5 4,035,923 + CA264_17320 0.84 -0.5 4,035,923 + CA264_17320 0.84 -0.5 4,035,924 - CA264_17320 0.84 +0.3 4,035,924 - CA264_17320 0.84 +0.1 4,036,012 - CA264_17320 0.88 -0.5 4,036,081 + -2.7 4,036,082 - +1.7 4,036,136 + -0.7 4,036,136 + -0.6 4,036,137 - +0.6 4,036,137 - +1.0 4,036,167 + -0.1 4,036,167 + -0.9 4,036,167 + -1.0 4,036,171 + -0.4 4,036,171 + +0.1 4,036,171 + +0.3 4,036,172 - +1.4 4,036,172 - +0.2 4,036,172 - -0.9 4,036,172 - +0.3 4,036,264 + +0.2
Or see this region's nucleotide sequence