Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_15865

Experiment: m.b. Spectinomycin 0.08 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_15855 and CA264_15860 are separated by 134 nucleotidesCA264_15860 and CA264_15865 are separated by 15 nucleotidesCA264_15865 and CA264_15870 are separated by 69 nucleotides CA264_15855: CA264_15855 - aminotransferase, at 3,700,415 to 3,701,563 _15855 CA264_15860: CA264_15860 - amidohydrolase, at 3,701,698 to 3,702,477 _15860 CA264_15865: CA264_15865 - helicase, at 3,702,493 to 3,702,852 _15865 CA264_15870: CA264_15870 - long-chain fatty acid--CoA ligase, at 3,702,922 to 3,704,574 _15870 Position (kb) 3702 3703Strain fitness (log2 ratio) -2 -1 0 1at 3701.608 kb on - strandat 3701.637 kb on + strandat 3701.638 kb on - strandat 3701.723 kb on + strandat 3701.723 kb on + strandat 3701.969 kb on - strand, within CA264_15860at 3702.017 kb on - strand, within CA264_15860at 3702.057 kb on + strand, within CA264_15860at 3702.061 kb on + strand, within CA264_15860at 3702.061 kb on + strand, within CA264_15860at 3702.061 kb on + strand, within CA264_15860at 3702.061 kb on + strand, within CA264_15860at 3702.063 kb on + strand, within CA264_15860at 3702.063 kb on + strand, within CA264_15860at 3702.064 kb on - strand, within CA264_15860at 3702.173 kb on - strand, within CA264_15860at 3702.188 kb on - strand, within CA264_15860at 3702.333 kb on + strand, within CA264_15860at 3702.334 kb on - strand, within CA264_15860at 3702.374 kb on + strand, within CA264_15860at 3702.566 kb on - strand, within CA264_15865at 3702.601 kb on + strand, within CA264_15865at 3702.602 kb on - strand, within CA264_15865at 3702.678 kb on - strand, within CA264_15865at 3702.765 kb on - strand, within CA264_15865at 3702.862 kb on + strandat 3702.866 kb on - strandat 3702.874 kb on - strandat 3702.905 kb on + strandat 3702.905 kb on + strandat 3702.906 kb on - strandat 3702.906 kb on - strandat 3702.911 kb on + strandat 3702.924 kb on - strandat 3702.925 kb on + strandat 3702.925 kb on + strandat 3703.000 kb on - strandat 3703.587 kb on + strand, within CA264_15870at 3703.654 kb on + strand, within CA264_15870at 3703.654 kb on + strand, within CA264_15870at 3703.741 kb on + strand, within CA264_15870at 3703.742 kb on - strand, within CA264_15870at 3703.825 kb on + strand, within CA264_15870at 3703.826 kb on - strand, within CA264_15870at 3703.829 kb on + strand, within CA264_15870at 3703.830 kb on - strand, within CA264_15870

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Spectinomycin 0.08 mg/ml
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3,701,608 - +0.5
3,701,637 + -0.8
3,701,638 - -0.2
3,701,723 + -0.9
3,701,723 + -0.4
3,701,969 - CA264_15860 0.35 -0.6
3,702,017 - CA264_15860 0.41 -0.9
3,702,057 + CA264_15860 0.46 -1.0
3,702,061 + CA264_15860 0.47 +1.1
3,702,061 + CA264_15860 0.47 +0.2
3,702,061 + CA264_15860 0.47 +1.4
3,702,061 + CA264_15860 0.47 -0.5
3,702,063 + CA264_15860 0.47 +0.5
3,702,063 + CA264_15860 0.47 -0.8
3,702,064 - CA264_15860 0.47 -0.8
3,702,173 - CA264_15860 0.61 +0.7
3,702,188 - CA264_15860 0.63 -0.4
3,702,333 + CA264_15860 0.81 +0.8
3,702,334 - CA264_15860 0.82 -0.5
3,702,374 + CA264_15860 0.87 +0.1
3,702,566 - CA264_15865 0.20 -0.2
3,702,601 + CA264_15865 0.30 -0.8
3,702,602 - CA264_15865 0.30 -0.2
3,702,678 - CA264_15865 0.51 -0.8
3,702,765 - CA264_15865 0.76 -0.8
3,702,862 + -1.9
3,702,866 - +0.7
3,702,874 - +0.5
3,702,905 + +0.1
3,702,905 + -1.3
3,702,906 - -1.2
3,702,906 - -0.6
3,702,911 + +0.0
3,702,924 - -0.6
3,702,925 + -1.0
3,702,925 + -0.1
3,703,000 - -0.1
3,703,587 + CA264_15870 0.40 -0.3
3,703,654 + CA264_15870 0.44 -1.1
3,703,654 + CA264_15870 0.44 -0.2
3,703,741 + CA264_15870 0.50 +0.3
3,703,742 - CA264_15870 0.50 +1.2
3,703,825 + CA264_15870 0.55 -0.1
3,703,826 - CA264_15870 0.55 +0.4
3,703,829 + CA264_15870 0.55 -0.9
3,703,830 - CA264_15870 0.55 -0.7

Or see this region's nucleotide sequence