Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_14985

Experiment: m.b. Spectinomycin 0.08 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_14980 and CA264_14985 are separated by 215 nucleotidesCA264_14985 and CA264_14990 are separated by 60 nucleotidesCA264_14990 and CA264_14995 are separated by 325 nucleotides CA264_14980: CA264_14980 - ribonuclease E/G, at 3,515,434 to 3,517,032 _14980 CA264_14985: CA264_14985 - hypothetical protein, at 3,517,248 to 3,518,114 _14985 CA264_14990: CA264_14990 - integration host factor subunit beta, at 3,518,175 to 3,518,480 _14990 CA264_14995: CA264_14995 - A/G-specific adenine glycosylase, at 3,518,806 to 3,519,897 _14995 Position (kb) 3517 3518 3519Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3517.059 kb on + strandat 3517.059 kb on + strandat 3517.059 kb on + strandat 3517.059 kb on + strandat 3517.079 kb on + strandat 3517.120 kb on - strandat 3517.207 kb on + strandat 3517.208 kb on - strandat 3517.378 kb on + strand, within CA264_14985at 3517.567 kb on + strand, within CA264_14985at 3517.568 kb on - strand, within CA264_14985at 3517.630 kb on + strand, within CA264_14985at 3517.631 kb on - strand, within CA264_14985at 3517.631 kb on - strand, within CA264_14985at 3517.635 kb on - strand, within CA264_14985at 3517.700 kb on - strand, within CA264_14985at 3517.784 kb on - strand, within CA264_14985at 3517.860 kb on - strand, within CA264_14985at 3518.040 kb on + strandat 3518.097 kb on + strandat 3518.592 kb on + strandat 3518.595 kb on + strandat 3518.802 kb on - strandat 3518.893 kb on - strandat 3518.906 kb on - strandat 3518.907 kb on + strandat 3518.907 kb on + strandat 3518.907 kb on + strandat 3518.907 kb on + strandat 3518.907 kb on + strandat 3518.907 kb on + strandat 3518.907 kb on + strandat 3518.908 kb on - strandat 3518.908 kb on - strandat 3518.908 kb on - strandat 3518.908 kb on - strandat 3518.965 kb on + strand, within CA264_14995at 3519.058 kb on + strand, within CA264_14995

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Spectinomycin 0.08 mg/ml
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3,517,059 + +2.0
3,517,059 + +1.4
3,517,059 + +2.5
3,517,059 + +2.4
3,517,079 + +3.7
3,517,120 - +0.8
3,517,207 + +1.9
3,517,208 - +3.2
3,517,378 + CA264_14985 0.15 +0.2
3,517,567 + CA264_14985 0.37 +0.4
3,517,568 - CA264_14985 0.37 -1.1
3,517,630 + CA264_14985 0.44 +1.2
3,517,631 - CA264_14985 0.44 -0.8
3,517,631 - CA264_14985 0.44 -2.2
3,517,635 - CA264_14985 0.45 +0.1
3,517,700 - CA264_14985 0.52 -2.1
3,517,784 - CA264_14985 0.62 -2.2
3,517,860 - CA264_14985 0.71 -0.5
3,518,040 + +0.4
3,518,097 + +2.4
3,518,592 + +1.4
3,518,595 + +0.6
3,518,802 - -1.1
3,518,893 - -1.0
3,518,906 - -1.8
3,518,907 + -0.7
3,518,907 + -0.7
3,518,907 + -0.9
3,518,907 + -1.0
3,518,907 + -0.8
3,518,907 + -0.6
3,518,907 + -1.0
3,518,908 - -3.1
3,518,908 - -2.6
3,518,908 - -2.1
3,518,908 - -0.6
3,518,965 + CA264_14995 0.15 +0.1
3,519,058 + CA264_14995 0.23 -2.1

Or see this region's nucleotide sequence