Experiment: m.b. Spectinomycin 0.08 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_13730 and CA264_13735 are separated by 78 nucleotides CA264_13735 and CA264_13740 are separated by 11 nucleotides CA264_13740 and CA264_13745 are separated by 266 nucleotides
CA264_13730: CA264_13730 - hypothetical protein, at 3,208,672 to 3,209,214
_13730
CA264_13735: CA264_13735 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, at 3,209,293 to 3,210,186
_13735
CA264_13740: CA264_13740 - cytidylate kinase, at 3,210,198 to 3,210,902
_13740
CA264_13745: CA264_13745 - adenine deaminase, at 3,211,169 to 3,212,803
_13745
Position (kb)
3210
3211 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3209.217 kb on + strand at 3209.217 kb on + strand at 3209.261 kb on + strand at 3209.262 kb on - strand at 3209.275 kb on - strand at 3209.321 kb on - strand at 3209.322 kb on + strand at 3209.323 kb on - strand at 3209.323 kb on - strand at 3209.323 kb on - strand at 3210.178 kb on + strand at 3210.925 kb on + strand at 3210.925 kb on + strand at 3210.982 kb on - strand at 3211.074 kb on - strand at 3211.106 kb on + strand at 3211.114 kb on - strand at 3211.150 kb on - strand at 3211.169 kb on - strand at 3211.169 kb on - strand at 3211.209 kb on + strand at 3211.209 kb on + strand at 3211.213 kb on + strand at 3211.213 kb on + strand at 3211.213 kb on + strand at 3211.214 kb on - strand at 3211.214 kb on - strand at 3211.298 kb on + strand at 3211.329 kb on + strand at 3211.329 kb on + strand at 3211.329 kb on + strand at 3211.440 kb on + strand, within CA264_13745 at 3211.440 kb on + strand, within CA264_13745 at 3211.441 kb on - strand, within CA264_13745 at 3211.454 kb on + strand, within CA264_13745 at 3211.454 kb on + strand, within CA264_13745 at 3211.454 kb on + strand, within CA264_13745 at 3211.455 kb on - strand, within CA264_13745 at 3211.455 kb on - strand, within CA264_13745 at 3211.598 kb on + strand, within CA264_13745 at 3211.680 kb on - strand, within CA264_13745
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Spectinomycin 0.08 mg/ml remove 3,209,217 + +0.0 3,209,217 + -0.1 3,209,261 + -0.5 3,209,262 - -0.2 3,209,275 - -1.8 3,209,321 - -0.1 3,209,322 + -0.9 3,209,323 - -0.2 3,209,323 - -0.2 3,209,323 - +0.4 3,210,178 + -0.6 3,210,925 + -0.1 3,210,925 + -1.0 3,210,982 - +0.6 3,211,074 - +0.5 3,211,106 + +0.7 3,211,114 - +1.5 3,211,150 - +0.5 3,211,169 - +1.5 3,211,169 - +0.5 3,211,209 + +0.8 3,211,209 + -1.2 3,211,213 + +0.2 3,211,213 + +0.0 3,211,213 + +0.9 3,211,214 - +1.5 3,211,214 - +1.4 3,211,298 + +0.2 3,211,329 + +2.8 3,211,329 + -1.3 3,211,329 + -0.4 3,211,440 + CA264_13745 0.17 -0.4 3,211,440 + CA264_13745 0.17 +0.8 3,211,441 - CA264_13745 0.17 -0.4 3,211,454 + CA264_13745 0.17 -1.4 3,211,454 + CA264_13745 0.17 +0.2 3,211,454 + CA264_13745 0.17 +0.7 3,211,455 - CA264_13745 0.17 +0.1 3,211,455 - CA264_13745 0.17 +1.2 3,211,598 + CA264_13745 0.26 -1.0 3,211,680 - CA264_13745 0.31 +0.6
Or see this region's nucleotide sequence