Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_13295

Experiment: m.b. Spectinomycin 0.08 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_13290 and CA264_13295 are separated by 223 nucleotidesCA264_13295 and CA264_13300 are separated by 6 nucleotidesCA264_13300 and CA264_13305 are separated by 143 nucleotides CA264_13290: CA264_13290 - GAF domain-containing protein, at 3,097,131 to 3,099,422 _13290 CA264_13295: CA264_13295 - rhomboid family intramembrane serine protease, at 3,099,646 to 3,100,554 _13295 CA264_13300: CA264_13300 - rhomboid family intramembrane serine protease, at 3,100,561 to 3,101,340 _13300 CA264_13305: CA264_13305 - DNA mismatch repair protein MutL, at 3,101,484 to 3,103,346 _13305 Position (kb) 3099 3100 3101Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3098.704 kb on - strand, within CA264_13290at 3098.759 kb on + strand, within CA264_13290at 3098.759 kb on + strand, within CA264_13290at 3098.769 kb on - strand, within CA264_13290at 3098.769 kb on - strand, within CA264_13290at 3098.820 kb on + strand, within CA264_13290at 3098.821 kb on - strand, within CA264_13290at 3098.830 kb on - strand, within CA264_13290at 3098.929 kb on + strand, within CA264_13290at 3098.937 kb on - strand, within CA264_13290at 3098.967 kb on - strand, within CA264_13290at 3099.011 kb on - strand, within CA264_13290at 3099.048 kb on + strand, within CA264_13290at 3099.090 kb on + strand, within CA264_13290at 3099.090 kb on + strand, within CA264_13290at 3099.091 kb on - strand, within CA264_13290at 3099.091 kb on - strand, within CA264_13290at 3099.179 kb on - strand, within CA264_13290at 3099.258 kb on + strandat 3099.318 kb on - strandat 3099.337 kb on + strandat 3099.386 kb on - strandat 3099.400 kb on - strandat 3099.425 kb on + strandat 3099.425 kb on + strandat 3099.426 kb on - strandat 3099.426 kb on - strandat 3099.464 kb on + strandat 3099.481 kb on + strandat 3099.485 kb on - strandat 3099.925 kb on - strand, within CA264_13295at 3099.967 kb on - strand, within CA264_13295at 3100.028 kb on + strand, within CA264_13295at 3100.028 kb on + strand, within CA264_13295at 3100.028 kb on + strand, within CA264_13295at 3100.029 kb on - strand, within CA264_13295at 3100.099 kb on + strand, within CA264_13295at 3100.135 kb on - strandat 3100.135 kb on - strand, within CA264_13295at 3100.224 kb on - strand, within CA264_13295at 3100.224 kb on - strand, within CA264_13295at 3100.281 kb on - strand, within CA264_13295at 3100.281 kb on - strand, within CA264_13295at 3100.413 kb on - strand, within CA264_13295at 3100.507 kb on - strandat 3100.534 kb on + strandat 3100.535 kb on - strandat 3100.535 kb on - strandat 3100.537 kb on - strandat 3100.546 kb on + strandat 3100.547 kb on - strandat 3100.549 kb on - strandat 3100.549 kb on - strandat 3100.556 kb on - strandat 3100.562 kb on + strandat 3100.562 kb on + strandat 3100.565 kb on + strandat 3100.565 kb on + strandat 3100.565 kb on + strandat 3100.566 kb on - strandat 3100.566 kb on - strandat 3100.566 kb on - strandat 3100.570 kb on - strandat 3100.581 kb on + strandat 3100.582 kb on - strandat 3100.603 kb on + strandat 3100.603 kb on + strandat 3100.603 kb on + strandat 3100.604 kb on - strandat 3100.604 kb on - strandat 3100.605 kb on + strandat 3100.605 kb on + strandat 3100.606 kb on - strandat 3100.645 kb on + strand, within CA264_13300at 3100.645 kb on + strand, within CA264_13300at 3100.680 kb on - strand, within CA264_13300at 3100.729 kb on + strand, within CA264_13300at 3100.730 kb on - strand, within CA264_13300at 3100.730 kb on - strand, within CA264_13300at 3100.730 kb on - strand, within CA264_13300at 3100.730 kb on - strand, within CA264_13300at 3100.850 kb on + strand, within CA264_13300at 3100.850 kb on + strand, within CA264_13300at 3100.850 kb on + strand, within CA264_13300at 3100.851 kb on - strand, within CA264_13300at 3100.877 kb on - strand, within CA264_13300at 3100.880 kb on + strand, within CA264_13300at 3100.880 kb on + strand, within CA264_13300at 3100.881 kb on - strand, within CA264_13300at 3100.881 kb on - strand, within CA264_13300at 3100.943 kb on + strand, within CA264_13300at 3100.959 kb on - strand, within CA264_13300at 3100.959 kb on - strand, within CA264_13300at 3100.959 kb on - strand, within CA264_13300at 3100.964 kb on + strand, within CA264_13300at 3100.964 kb on + strand, within CA264_13300at 3100.994 kb on + strand, within CA264_13300at 3100.994 kb on + strand, within CA264_13300at 3101.136 kb on + strand, within CA264_13300at 3101.235 kb on - strand, within CA264_13300at 3101.237 kb on + strand, within CA264_13300at 3101.237 kb on + strand, within CA264_13300at 3101.264 kb on - strandat 3101.354 kb on + strandat 3101.457 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Spectinomycin 0.08 mg/ml
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3,098,704 - CA264_13290 0.69 +0.0
3,098,759 + CA264_13290 0.71 +2.7
3,098,759 + CA264_13290 0.71 +1.0
3,098,769 - CA264_13290 0.71 +2.2
3,098,769 - CA264_13290 0.71 -0.7
3,098,820 + CA264_13290 0.74 +0.2
3,098,821 - CA264_13290 0.74 -0.0
3,098,830 - CA264_13290 0.74 -0.7
3,098,929 + CA264_13290 0.78 +0.1
3,098,937 - CA264_13290 0.79 -0.5
3,098,967 - CA264_13290 0.80 -0.4
3,099,011 - CA264_13290 0.82 +0.9
3,099,048 + CA264_13290 0.84 +0.3
3,099,090 + CA264_13290 0.85 -0.1
3,099,090 + CA264_13290 0.85 -1.6
3,099,091 - CA264_13290 0.86 -1.0
3,099,091 - CA264_13290 0.86 -0.5
3,099,179 - CA264_13290 0.89 -1.1
3,099,258 + -1.0
3,099,318 - -0.8
3,099,337 + -0.1
3,099,386 - +1.7
3,099,400 - +0.3
3,099,425 + -0.5
3,099,425 + -0.1
3,099,426 - +0.8
3,099,426 - -0.0
3,099,464 + -0.1
3,099,481 + -0.1
3,099,485 - -1.1
3,099,925 - CA264_13295 0.31 -0.4
3,099,967 - CA264_13295 0.35 -0.6
3,100,028 + CA264_13295 0.42 -1.0
3,100,028 + CA264_13295 0.42 +0.6
3,100,028 + CA264_13295 0.42 +0.1
3,100,029 - CA264_13295 0.42 -0.4
3,100,099 + CA264_13295 0.50 -0.6
3,100,135 - -0.2
3,100,135 - CA264_13295 0.54 -0.7
3,100,224 - CA264_13295 0.64 +0.1
3,100,224 - CA264_13295 0.64 -1.2
3,100,281 - CA264_13295 0.70 +1.4
3,100,281 - CA264_13295 0.70 -1.2
3,100,413 - CA264_13295 0.84 -0.3
3,100,507 - +0.1
3,100,534 + +0.1
3,100,535 - +0.1
3,100,535 - +0.2
3,100,537 - -1.3
3,100,546 + -0.5
3,100,547 - -0.1
3,100,549 - -1.7
3,100,549 - -1.1
3,100,556 - +0.4
3,100,562 + -0.1
3,100,562 + -0.3
3,100,565 + +0.1
3,100,565 + -0.5
3,100,565 + -0.0
3,100,566 - +0.4
3,100,566 - +1.9
3,100,566 - +0.4
3,100,570 - +0.1
3,100,581 + +1.5
3,100,582 - -0.0
3,100,603 + -0.1
3,100,603 + -0.6
3,100,603 + -0.3
3,100,604 - +0.1
3,100,604 - +0.1
3,100,605 + -1.0
3,100,605 + +0.3
3,100,606 - +2.8
3,100,645 + CA264_13300 0.11 -0.2
3,100,645 + CA264_13300 0.11 +0.1
3,100,680 - CA264_13300 0.15 +0.1
3,100,729 + CA264_13300 0.22 +0.9
3,100,730 - CA264_13300 0.22 +1.3
3,100,730 - CA264_13300 0.22 -2.1
3,100,730 - CA264_13300 0.22 +0.6
3,100,730 - CA264_13300 0.22 +0.4
3,100,850 + CA264_13300 0.37 -0.2
3,100,850 + CA264_13300 0.37 -0.4
3,100,850 + CA264_13300 0.37 -0.4
3,100,851 - CA264_13300 0.37 +0.9
3,100,877 - CA264_13300 0.41 +0.9
3,100,880 + CA264_13300 0.41 +0.2
3,100,880 + CA264_13300 0.41 +1.2
3,100,881 - CA264_13300 0.41 -0.3
3,100,881 - CA264_13300 0.41 +1.5
3,100,943 + CA264_13300 0.49 -0.5
3,100,959 - CA264_13300 0.51 -1.1
3,100,959 - CA264_13300 0.51 +0.2
3,100,959 - CA264_13300 0.51 +0.2
3,100,964 + CA264_13300 0.52 -0.4
3,100,964 + CA264_13300 0.52 -0.3
3,100,994 + CA264_13300 0.56 -0.1
3,100,994 + CA264_13300 0.56 -0.9
3,101,136 + CA264_13300 0.74 -1.7
3,101,235 - CA264_13300 0.86 -0.2
3,101,237 + CA264_13300 0.87 -0.4
3,101,237 + CA264_13300 0.87 +0.1
3,101,264 - -0.2
3,101,354 + -0.6
3,101,457 + -0.0

Or see this region's nucleotide sequence