Experiment: m.b. Spectinomycin 0.08 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_12605 and CA264_12610 are separated by 328 nucleotides CA264_12610 and CA264_12615 are separated by 45 nucleotides
CA264_12605: CA264_12605 - stress protection protein MarC, at 2,941,449 to 2,942,069
_12605
CA264_12610: CA264_12610 - hypothetical protein, at 2,942,398 to 2,943,756
_12610
CA264_12615: CA264_12615 - peptidase M16, at 2,943,802 to 2,945,442
_12615
Position (kb)
2942
2943
2944 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2941.410 kb on - strand at 2941.414 kb on - strand at 2941.440 kb on + strand at 2941.458 kb on - strand at 2941.458 kb on - strand at 2941.582 kb on + strand, within CA264_12605 at 2941.582 kb on + strand, within CA264_12605 at 2941.584 kb on + strand, within CA264_12605 at 2941.585 kb on - strand, within CA264_12605 at 2941.585 kb on - strand, within CA264_12605 at 2941.626 kb on + strand, within CA264_12605 at 2941.627 kb on - strand, within CA264_12605 at 2941.838 kb on + strand, within CA264_12605 at 2941.840 kb on + strand, within CA264_12605 at 2941.841 kb on - strand, within CA264_12605 at 2941.900 kb on + strand, within CA264_12605 at 2941.900 kb on + strand, within CA264_12605 at 2941.901 kb on - strand, within CA264_12605 at 2941.920 kb on + strand, within CA264_12605 at 2941.949 kb on + strand, within CA264_12605 at 2942.003 kb on + strand, within CA264_12605 at 2942.129 kb on + strand at 2942.130 kb on - strand at 2942.132 kb on + strand at 2942.132 kb on + strand at 2942.133 kb on - strand at 2942.133 kb on - strand at 2942.144 kb on + strand at 2942.144 kb on + strand at 2942.149 kb on + strand at 2942.150 kb on - strand at 2942.152 kb on + strand at 2942.262 kb on + strand at 2942.289 kb on + strand at 2942.344 kb on + strand at 2942.344 kb on + strand at 2942.344 kb on + strand at 2942.344 kb on + strand at 2942.345 kb on - strand at 2942.346 kb on + strand at 2942.352 kb on + strand at 2942.352 kb on + strand at 2942.353 kb on - strand at 2942.353 kb on - strand at 2942.353 kb on - strand at 2942.353 kb on - strand at 2942.353 kb on - strand at 2942.353 kb on - strand at 2942.353 kb on - strand at 2942.354 kb on + strand at 2942.354 kb on + strand at 2942.354 kb on + strand at 2942.354 kb on + strand at 2942.354 kb on + strand at 2942.355 kb on - strand at 2942.355 kb on - strand at 2942.355 kb on - strand at 2942.355 kb on - strand at 2942.372 kb on - strand at 2942.386 kb on - strand at 2942.411 kb on + strand at 2942.548 kb on + strand, within CA264_12610 at 2942.549 kb on - strand, within CA264_12610 at 2942.549 kb on - strand, within CA264_12610 at 2942.575 kb on + strand, within CA264_12610 at 2942.575 kb on + strand, within CA264_12610 at 2942.575 kb on + strand, within CA264_12610 at 2942.575 kb on + strand, within CA264_12610 at 2942.575 kb on + strand, within CA264_12610 at 2942.575 kb on + strand, within CA264_12610 at 2942.576 kb on - strand, within CA264_12610 at 2942.577 kb on + strand, within CA264_12610 at 2942.582 kb on + strand, within CA264_12610 at 2942.675 kb on - strand, within CA264_12610 at 2942.914 kb on + strand, within CA264_12610 at 2942.953 kb on + strand, within CA264_12610 at 2942.954 kb on - strand, within CA264_12610 at 2943.007 kb on + strand, within CA264_12610 at 2943.041 kb on - strand, within CA264_12610 at 2943.052 kb on + strand, within CA264_12610 at 2943.115 kb on + strand, within CA264_12610 at 2943.142 kb on + strand, within CA264_12610 at 2943.143 kb on - strand, within CA264_12610 at 2943.145 kb on - strand, within CA264_12610 at 2943.197 kb on + strand, within CA264_12610 at 2943.300 kb on - strand, within CA264_12610 at 2943.445 kb on + strand, within CA264_12610 at 2943.445 kb on + strand, within CA264_12610 at 2943.445 kb on + strand, within CA264_12610 at 2943.497 kb on + strand, within CA264_12610 at 2943.497 kb on + strand, within CA264_12610 at 2943.498 kb on - strand, within CA264_12610 at 2943.498 kb on - strand, within CA264_12610 at 2943.597 kb on + strand, within CA264_12610 at 2943.598 kb on - strand, within CA264_12610 at 2943.637 kb on + strand at 2943.637 kb on + strand at 2943.645 kb on - strand at 2943.646 kb on + strand at 2943.777 kb on - strand at 2943.779 kb on - strand at 2943.798 kb on + strand at 2943.799 kb on - strand at 2943.799 kb on - strand at 2943.820 kb on + strand at 2943.820 kb on + strand at 2943.820 kb on + strand at 2943.820 kb on + strand at 2943.820 kb on + strand at 2943.820 kb on + strand at 2943.820 kb on + strand at 2943.821 kb on - strand at 2943.821 kb on - strand at 2943.821 kb on - strand at 2943.903 kb on + strand at 2944.030 kb on - strand, within CA264_12615 at 2944.035 kb on - strand, within CA264_12615 at 2944.035 kb on - strand, within CA264_12615 at 2944.066 kb on - strand, within CA264_12615 at 2944.066 kb on - strand, within CA264_12615 at 2944.153 kb on + strand, within CA264_12615 at 2944.156 kb on + strand, within CA264_12615 at 2944.188 kb on + strand, within CA264_12615 at 2944.390 kb on + strand, within CA264_12615 at 2944.448 kb on + strand, within CA264_12615 at 2944.448 kb on + strand, within CA264_12615 at 2944.448 kb on + strand, within CA264_12615 at 2944.449 kb on - strand, within CA264_12615 at 2944.449 kb on - strand, within CA264_12615 at 2944.468 kb on + strand, within CA264_12615 at 2944.469 kb on - strand, within CA264_12615 at 2944.469 kb on - strand, within CA264_12615 at 2944.510 kb on + strand, within CA264_12615 at 2944.511 kb on - strand, within CA264_12615 at 2944.566 kb on - strand, within CA264_12615 at 2944.573 kb on - strand, within CA264_12615 at 2944.619 kb on + strand, within CA264_12615 at 2944.753 kb on + strand, within CA264_12615
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Spectinomycin 0.08 mg/ml remove 2,941,410 - +0.0 2,941,414 - +0.4 2,941,440 + +0.4 2,941,458 - +0.2 2,941,458 - +0.1 2,941,582 + CA264_12605 0.21 -0.4 2,941,582 + CA264_12605 0.21 -0.1 2,941,584 + CA264_12605 0.22 -0.7 2,941,585 - CA264_12605 0.22 -1.3 2,941,585 - CA264_12605 0.22 +0.7 2,941,626 + CA264_12605 0.29 -1.1 2,941,627 - CA264_12605 0.29 -0.5 2,941,838 + CA264_12605 0.63 -0.4 2,941,840 + CA264_12605 0.63 +0.1 2,941,841 - CA264_12605 0.63 -0.3 2,941,900 + CA264_12605 0.73 -0.8 2,941,900 + CA264_12605 0.73 -0.1 2,941,901 - CA264_12605 0.73 -0.0 2,941,920 + CA264_12605 0.76 -0.2 2,941,949 + CA264_12605 0.81 -0.0 2,942,003 + CA264_12605 0.89 -0.2 2,942,129 + +1.1 2,942,130 - -0.8 2,942,132 + -1.5 2,942,132 + +0.1 2,942,133 - -0.5 2,942,133 - -0.0 2,942,144 + -0.5 2,942,144 + +0.2 2,942,149 + -1.2 2,942,150 - -0.7 2,942,152 + -0.4 2,942,262 + -0.4 2,942,289 + +0.3 2,942,344 + -0.6 2,942,344 + -1.0 2,942,344 + +0.4 2,942,344 + -0.0 2,942,345 - -0.4 2,942,346 + -0.3 2,942,352 + -0.2 2,942,352 + -1.1 2,942,353 - -1.7 2,942,353 - +0.6 2,942,353 - +1.0 2,942,353 - +0.9 2,942,353 - -0.7 2,942,353 - +1.3 2,942,353 - -0.1 2,942,354 + +1.1 2,942,354 + +0.9 2,942,354 + -1.1 2,942,354 + -0.1 2,942,354 + +0.3 2,942,355 - -0.0 2,942,355 - -0.3 2,942,355 - -1.0 2,942,355 - -0.5 2,942,372 - -1.2 2,942,386 - +1.6 2,942,411 + +0.2 2,942,548 + CA264_12610 0.11 -0.3 2,942,549 - CA264_12610 0.11 -0.8 2,942,549 - CA264_12610 0.11 +1.2 2,942,575 + CA264_12610 0.13 +0.8 2,942,575 + CA264_12610 0.13 -0.3 2,942,575 + CA264_12610 0.13 -0.7 2,942,575 + CA264_12610 0.13 +0.1 2,942,575 + CA264_12610 0.13 -0.6 2,942,575 + CA264_12610 0.13 +0.0 2,942,576 - CA264_12610 0.13 -0.7 2,942,577 + CA264_12610 0.13 +0.1 2,942,582 + CA264_12610 0.14 -0.2 2,942,675 - CA264_12610 0.20 -0.7 2,942,914 + CA264_12610 0.38 -0.9 2,942,953 + CA264_12610 0.41 -0.2 2,942,954 - CA264_12610 0.41 -0.2 2,943,007 + CA264_12610 0.45 +1.0 2,943,041 - CA264_12610 0.47 -0.4 2,943,052 + CA264_12610 0.48 -0.2 2,943,115 + CA264_12610 0.53 +0.3 2,943,142 + CA264_12610 0.55 -0.1 2,943,143 - CA264_12610 0.55 -1.0 2,943,145 - CA264_12610 0.55 -0.4 2,943,197 + CA264_12610 0.59 +0.4 2,943,300 - CA264_12610 0.66 -0.4 2,943,445 + CA264_12610 0.77 -0.2 2,943,445 + CA264_12610 0.77 +0.2 2,943,445 + CA264_12610 0.77 -0.3 2,943,497 + CA264_12610 0.81 +1.2 2,943,497 + CA264_12610 0.81 +0.2 2,943,498 - CA264_12610 0.81 -0.6 2,943,498 - CA264_12610 0.81 +0.2 2,943,597 + CA264_12610 0.88 +0.3 2,943,598 - CA264_12610 0.88 -0.6 2,943,637 + -0.2 2,943,637 + -0.3 2,943,645 - -1.2 2,943,646 + -0.0 2,943,777 - +0.4 2,943,779 - -0.6 2,943,798 + -0.2 2,943,799 - -1.5 2,943,799 - -1.7 2,943,820 + -0.1 2,943,820 + -0.4 2,943,820 + -0.5 2,943,820 + +0.4 2,943,820 + +0.7 2,943,820 + -0.4 2,943,820 + +0.0 2,943,821 - -0.6 2,943,821 - +0.3 2,943,821 - -1.1 2,943,903 + -0.2 2,944,030 - CA264_12615 0.14 +0.5 2,944,035 - CA264_12615 0.14 -0.5 2,944,035 - CA264_12615 0.14 -0.4 2,944,066 - CA264_12615 0.16 +0.6 2,944,066 - CA264_12615 0.16 +1.0 2,944,153 + CA264_12615 0.21 +0.8 2,944,156 + CA264_12615 0.22 -0.0 2,944,188 + CA264_12615 0.24 -0.4 2,944,390 + CA264_12615 0.36 -0.9 2,944,448 + CA264_12615 0.39 +0.8 2,944,448 + CA264_12615 0.39 -0.6 2,944,448 + CA264_12615 0.39 +2.6 2,944,449 - CA264_12615 0.39 -2.0 2,944,449 - CA264_12615 0.39 +0.1 2,944,468 + CA264_12615 0.41 +0.1 2,944,469 - CA264_12615 0.41 -0.1 2,944,469 - CA264_12615 0.41 -0.8 2,944,510 + CA264_12615 0.43 -0.9 2,944,511 - CA264_12615 0.43 -0.8 2,944,566 - CA264_12615 0.47 +0.7 2,944,573 - CA264_12615 0.47 -0.5 2,944,619 + CA264_12615 0.50 +0.1 2,944,753 + CA264_12615 0.58 -0.6
Or see this region's nucleotide sequence