Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_06525

Experiment: m.b. Spectinomycin 0.08 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_06515 and CA264_06520 are separated by 64 nucleotidesCA264_06520 and CA264_06525 overlap by 11 nucleotidesCA264_06525 and CA264_06530 are separated by 180 nucleotidesCA264_06530 and CA264_06535 are separated by 21 nucleotides CA264_06515: CA264_06515 - transcription elongation factor GreAB, at 1,505,573 to 1,506,091 _06515 CA264_06520: CA264_06520 - DUF4440 domain-containing protein, at 1,506,156 to 1,506,605 _06520 CA264_06525: CA264_06525 - monofunctional biosynthetic peptidoglycan transglycosylase, at 1,506,595 to 1,507,329 _06525 CA264_06530: CA264_06530 - peptidase, at 1,507,510 to 1,508,154 _06530 CA264_06535: CA264_06535 - metallophosphoesterase, at 1,508,176 to 1,509,390 _06535 Position (kb) 1506 1507 1508Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1505.661 kb on - strand, within CA264_06515at 1505.661 kb on - strand, within CA264_06515at 1505.774 kb on - strand, within CA264_06515at 1505.774 kb on - strand, within CA264_06515at 1505.774 kb on - strand, within CA264_06515at 1505.793 kb on + strand, within CA264_06515at 1505.794 kb on - strand, within CA264_06515at 1505.814 kb on + strand, within CA264_06515at 1505.814 kb on + strand, within CA264_06515at 1505.815 kb on - strand, within CA264_06515at 1505.863 kb on - strand, within CA264_06515at 1505.881 kb on + strand, within CA264_06515at 1505.881 kb on + strand, within CA264_06515at 1505.881 kb on + strand, within CA264_06515at 1505.882 kb on - strand, within CA264_06515at 1505.934 kb on + strand, within CA264_06515at 1505.982 kb on + strand, within CA264_06515at 1506.072 kb on + strandat 1506.073 kb on - strandat 1506.106 kb on - strandat 1506.111 kb on + strandat 1506.112 kb on - strandat 1506.150 kb on + strandat 1506.152 kb on + strandat 1506.304 kb on - strand, within CA264_06520at 1506.335 kb on + strand, within CA264_06520at 1506.335 kb on + strand, within CA264_06520at 1506.363 kb on - strand, within CA264_06520at 1506.364 kb on + strand, within CA264_06520at 1506.364 kb on + strand, within CA264_06520at 1506.364 kb on + strand, within CA264_06520at 1506.365 kb on - strand, within CA264_06520at 1506.365 kb on - strand, within CA264_06520at 1506.391 kb on + strand, within CA264_06520at 1506.451 kb on + strand, within CA264_06520at 1506.528 kb on + strand, within CA264_06520at 1506.529 kb on - strand, within CA264_06520at 1506.571 kb on - strandat 1506.571 kb on - strandat 1506.589 kb on + strandat 1506.589 kb on + strandat 1506.633 kb on - strandat 1506.633 kb on - strandat 1506.633 kb on - strandat 1506.745 kb on + strand, within CA264_06525at 1506.794 kb on + strand, within CA264_06525at 1506.794 kb on - strand, within CA264_06525at 1506.795 kb on - strand, within CA264_06525at 1506.854 kb on + strand, within CA264_06525at 1506.854 kb on + strand, within CA264_06525at 1506.856 kb on + strand, within CA264_06525at 1506.856 kb on + strand, within CA264_06525at 1506.856 kb on + strand, within CA264_06525at 1506.856 kb on + strand, within CA264_06525at 1506.857 kb on - strand, within CA264_06525at 1506.903 kb on + strand, within CA264_06525at 1506.904 kb on - strand, within CA264_06525at 1506.904 kb on - strand, within CA264_06525at 1506.932 kb on + strand, within CA264_06525at 1506.933 kb on - strand, within CA264_06525at 1506.999 kb on + strand, within CA264_06525at 1507.038 kb on + strand, within CA264_06525at 1507.038 kb on + strand, within CA264_06525at 1507.105 kb on + strand, within CA264_06525at 1507.106 kb on - strand, within CA264_06525at 1507.140 kb on + strand, within CA264_06525at 1507.270 kb on - strandat 1507.282 kb on + strandat 1507.298 kb on - strandat 1507.298 kb on - strandat 1507.388 kb on + strandat 1507.388 kb on + strandat 1507.388 kb on + strandat 1507.394 kb on + strandat 1507.394 kb on + strandat 1507.394 kb on + strandat 1507.395 kb on - strandat 1507.477 kb on + strandat 1507.478 kb on - strandat 1507.483 kb on + strandat 1507.484 kb on - strandat 1507.493 kb on - strandat 1507.496 kb on + strandat 1507.496 kb on + strandat 1507.496 kb on + strandat 1507.496 kb on + strandat 1507.496 kb on + strandat 1507.496 kb on + strandat 1507.497 kb on - strandat 1507.497 kb on - strandat 1507.497 kb on - strandat 1507.497 kb on - strandat 1507.523 kb on + strandat 1507.523 kb on + strandat 1507.529 kb on - strandat 1507.676 kb on + strand, within CA264_06530at 1507.677 kb on - strand, within CA264_06530at 1507.811 kb on - strand, within CA264_06530at 1507.832 kb on + strand, within CA264_06530at 1507.832 kb on + strand, within CA264_06530at 1507.836 kb on - strand, within CA264_06530at 1507.889 kb on + strand, within CA264_06530at 1508.018 kb on + strand, within CA264_06530at 1508.018 kb on + strand, within CA264_06530at 1508.048 kb on + strand, within CA264_06530at 1508.048 kb on + strand, within CA264_06530at 1508.058 kb on - strand, within CA264_06530at 1508.173 kb on + strandat 1508.174 kb on - strandat 1508.186 kb on - strandat 1508.218 kb on - strandat 1508.218 kb on - strandat 1508.250 kb on + strandat 1508.250 kb on + strandat 1508.250 kb on + strandat 1508.251 kb on - strandat 1508.251 kb on - strandat 1508.251 kb on - strandat 1508.251 kb on - strandat 1508.251 kb on - strandat 1508.251 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Spectinomycin 0.08 mg/ml
remove
1,505,661 - CA264_06515 0.17 +0.2
1,505,661 - CA264_06515 0.17 +0.0
1,505,774 - CA264_06515 0.39 +0.1
1,505,774 - CA264_06515 0.39 -1.2
1,505,774 - CA264_06515 0.39 -0.2
1,505,793 + CA264_06515 0.42 -0.0
1,505,794 - CA264_06515 0.43 -0.1
1,505,814 + CA264_06515 0.46 +0.2
1,505,814 + CA264_06515 0.46 -0.4
1,505,815 - CA264_06515 0.47 +0.3
1,505,863 - CA264_06515 0.56 +0.0
1,505,881 + CA264_06515 0.59 -0.2
1,505,881 + CA264_06515 0.59 -0.7
1,505,881 + CA264_06515 0.59 -0.0
1,505,882 - CA264_06515 0.60 +0.1
1,505,934 + CA264_06515 0.70 -0.4
1,505,982 + CA264_06515 0.79 -0.1
1,506,072 + -0.4
1,506,073 - +0.5
1,506,106 - -0.5
1,506,111 + -0.1
1,506,112 - +0.1
1,506,150 + -0.9
1,506,152 + -0.1
1,506,304 - CA264_06520 0.33 +0.9
1,506,335 + CA264_06520 0.40 -1.1
1,506,335 + CA264_06520 0.40 -0.3
1,506,363 - CA264_06520 0.46 -0.8
1,506,364 + CA264_06520 0.46 +1.0
1,506,364 + CA264_06520 0.46 -1.4
1,506,364 + CA264_06520 0.46 -0.8
1,506,365 - CA264_06520 0.46 +0.6
1,506,365 - CA264_06520 0.46 -0.7
1,506,391 + CA264_06520 0.52 -0.7
1,506,451 + CA264_06520 0.66 +0.2
1,506,528 + CA264_06520 0.83 -1.1
1,506,529 - CA264_06520 0.83 -0.1
1,506,571 - -0.0
1,506,571 - -0.3
1,506,589 + -0.2
1,506,589 + -0.6
1,506,633 - -0.0
1,506,633 - -1.1
1,506,633 - -0.2
1,506,745 + CA264_06525 0.20 +0.1
1,506,794 + CA264_06525 0.27 -0.1
1,506,794 - CA264_06525 0.27 -0.2
1,506,795 - CA264_06525 0.27 -0.3
1,506,854 + CA264_06525 0.35 -0.2
1,506,854 + CA264_06525 0.35 +0.6
1,506,856 + CA264_06525 0.36 +0.0
1,506,856 + CA264_06525 0.36 -3.4
1,506,856 + CA264_06525 0.36 +0.5
1,506,856 + CA264_06525 0.36 +0.3
1,506,857 - CA264_06525 0.36 +0.5
1,506,903 + CA264_06525 0.42 +2.4
1,506,904 - CA264_06525 0.42 -0.6
1,506,904 - CA264_06525 0.42 +0.4
1,506,932 + CA264_06525 0.46 +0.3
1,506,933 - CA264_06525 0.46 -0.3
1,506,999 + CA264_06525 0.55 +0.1
1,507,038 + CA264_06525 0.60 -0.4
1,507,038 + CA264_06525 0.60 +2.4
1,507,105 + CA264_06525 0.69 +0.3
1,507,106 - CA264_06525 0.70 +1.0
1,507,140 + CA264_06525 0.74 -1.4
1,507,270 - -0.2
1,507,282 + -0.4
1,507,298 - +0.0
1,507,298 - -0.6
1,507,388 + +0.6
1,507,388 + +0.8
1,507,388 + +1.0
1,507,394 + -1.2
1,507,394 + -0.5
1,507,394 + -0.4
1,507,395 - -0.8
1,507,477 + -0.3
1,507,478 - -0.2
1,507,483 + +1.2
1,507,484 - +0.2
1,507,493 - +0.1
1,507,496 + +0.3
1,507,496 + +0.5
1,507,496 + -0.4
1,507,496 + -0.1
1,507,496 + +0.0
1,507,496 + -0.6
1,507,497 - +0.0
1,507,497 - -1.2
1,507,497 - -0.4
1,507,497 - -0.0
1,507,523 + -0.4
1,507,523 + -0.3
1,507,529 - -0.2
1,507,676 + CA264_06530 0.26 -0.4
1,507,677 - CA264_06530 0.26 -2.1
1,507,811 - CA264_06530 0.47 +0.5
1,507,832 + CA264_06530 0.50 +1.0
1,507,832 + CA264_06530 0.50 +0.8
1,507,836 - CA264_06530 0.51 +1.0
1,507,889 + CA264_06530 0.59 -0.6
1,508,018 + CA264_06530 0.79 -0.5
1,508,018 + CA264_06530 0.79 +0.2
1,508,048 + CA264_06530 0.83 +1.7
1,508,048 + CA264_06530 0.83 +0.1
1,508,058 - CA264_06530 0.85 +3.5
1,508,173 + -0.6
1,508,174 - +0.3
1,508,186 - -0.0
1,508,218 - +0.1
1,508,218 - -0.5
1,508,250 + -1.1
1,508,250 + -0.3
1,508,250 + +0.3
1,508,251 - +1.1
1,508,251 - +0.0
1,508,251 - +0.0
1,508,251 - -0.3
1,508,251 - +0.1
1,508,251 - +0.1

Or see this region's nucleotide sequence