Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_04220

Experiment: m.b. Spectinomycin 0.08 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_04215 and CA264_04220 overlap by 4 nucleotidesCA264_04220 and CA264_04225 are separated by 4 nucleotidesCA264_04225 and CA264_04230 overlap by 4 nucleotidesCA264_04230 and CA264_04235 are separated by 4 nucleotides CA264_04215: CA264_04215 - NADH-quinone oxidoreductase subunit M, at 973,731 to 975,314 _04215 CA264_04220: CA264_04220 - NADH-quinone oxidoreductase subunit L, at 975,311 to 977,197 _04220 CA264_04225: CA264_04225 - NADH-quinone oxidoreductase subunit K, at 977,202 to 977,510 _04225 CA264_04230: CA264_04230 - NADH:ubiquinone oxidoreductase subunit J, at 977,507 to 978,043 _04230 CA264_04235: CA264_04235 - NADH-quinone oxidoreductase subunit I, at 978,048 to 978,563 _04235 Position (kb) 975 976 977 978Strain fitness (log2 ratio) -2 -1 0 1at 974.340 kb on - strand, within CA264_04215at 974.359 kb on - strand, within CA264_04215at 974.364 kb on - strand, within CA264_04215at 974.390 kb on - strand, within CA264_04215at 974.533 kb on + strand, within CA264_04215at 974.534 kb on - strand, within CA264_04215at 974.731 kb on + strand, within CA264_04215at 974.731 kb on + strand, within CA264_04215at 974.732 kb on - strand, within CA264_04215at 974.761 kb on + strand, within CA264_04215at 974.762 kb on - strand, within CA264_04215at 974.763 kb on + strand, within CA264_04215at 974.834 kb on - strand, within CA264_04215at 974.844 kb on - strand, within CA264_04215at 974.844 kb on - strand, within CA264_04215at 974.873 kb on - strand, within CA264_04215at 975.151 kb on - strand, within CA264_04215at 975.181 kb on + strandat 975.309 kb on + strandat 975.309 kb on + strandat 975.309 kb on + strandat 975.314 kb on + strandat 975.314 kb on + strandat 975.315 kb on - strandat 975.321 kb on - strandat 975.321 kb on - strandat 975.321 kb on - strandat 975.321 kb on - strandat 975.326 kb on + strandat 975.327 kb on - strandat 975.370 kb on - strandat 975.452 kb on - strandat 975.486 kb on + strandat 975.492 kb on + strandat 975.493 kb on - strandat 975.619 kb on - strand, within CA264_04220at 975.619 kb on - strand, within CA264_04220at 975.624 kb on + strand, within CA264_04220at 975.624 kb on + strand, within CA264_04220at 975.624 kb on + strand, within CA264_04220at 975.624 kb on + strand, within CA264_04220at 975.709 kb on + strand, within CA264_04220at 975.710 kb on - strand, within CA264_04220at 975.710 kb on - strand, within CA264_04220at 975.710 kb on - strand, within CA264_04220at 975.779 kb on + strand, within CA264_04220at 975.780 kb on - strand, within CA264_04220at 975.781 kb on + strand, within CA264_04220at 975.803 kb on + strand, within CA264_04220at 975.804 kb on - strand, within CA264_04220at 975.876 kb on + strand, within CA264_04220at 975.887 kb on - strand, within CA264_04220at 975.887 kb on - strand, within CA264_04220at 975.887 kb on - strand, within CA264_04220at 975.979 kb on + strand, within CA264_04220at 976.025 kb on - strand, within CA264_04220at 976.081 kb on + strand, within CA264_04220at 976.081 kb on + strand, within CA264_04220at 976.136 kb on + strand, within CA264_04220at 976.136 kb on + strand, within CA264_04220at 976.139 kb on - strand, within CA264_04220at 976.139 kb on - strand, within CA264_04220at 976.201 kb on + strand, within CA264_04220at 976.240 kb on + strand, within CA264_04220at 976.240 kb on + strand, within CA264_04220at 976.241 kb on - strand, within CA264_04220at 976.243 kb on - strand, within CA264_04220at 976.243 kb on - strand, within CA264_04220at 976.386 kb on + strand, within CA264_04220at 976.386 kb on + strand, within CA264_04220at 976.387 kb on - strand, within CA264_04220at 976.418 kb on + strand, within CA264_04220at 976.436 kb on + strand, within CA264_04220at 976.437 kb on - strand, within CA264_04220at 976.437 kb on - strand, within CA264_04220at 976.529 kb on + strand, within CA264_04220at 976.591 kb on + strand, within CA264_04220at 976.592 kb on - strand, within CA264_04220at 976.592 kb on - strand, within CA264_04220at 976.595 kb on + strand, within CA264_04220at 976.595 kb on + strand, within CA264_04220at 976.595 kb on + strand, within CA264_04220at 976.596 kb on - strand, within CA264_04220at 976.596 kb on - strand, within CA264_04220at 976.596 kb on - strand, within CA264_04220at 976.597 kb on + strand, within CA264_04220at 976.604 kb on + strand, within CA264_04220at 976.605 kb on - strand, within CA264_04220at 976.681 kb on + strand, within CA264_04220at 976.681 kb on + strand, within CA264_04220at 976.722 kb on + strand, within CA264_04220at 976.777 kb on - strand, within CA264_04220at 976.816 kb on + strand, within CA264_04220at 976.816 kb on + strand, within CA264_04220at 976.817 kb on - strand, within CA264_04220at 976.817 kb on - strand, within CA264_04220at 976.879 kb on - strand, within CA264_04220at 977.003 kb on + strand, within CA264_04220at 977.003 kb on + strand, within CA264_04220at 977.003 kb on + strand, within CA264_04220at 977.004 kb on - strand, within CA264_04220at 977.017 kb on - strandat 977.046 kb on - strandat 977.066 kb on - strandat 977.144 kb on + strandat 977.145 kb on - strandat 977.148 kb on - strandat 977.148 kb on - strandat 977.148 kb on - strandat 977.156 kb on + strandat 977.214 kb on + strandat 977.214 kb on + strandat 977.214 kb on + strandat 977.214 kb on + strandat 977.214 kb on + strandat 977.215 kb on - strandat 977.215 kb on - strandat 977.255 kb on - strand, within CA264_04225at 977.280 kb on + strand, within CA264_04225at 977.354 kb on + strand, within CA264_04225at 977.355 kb on - strand, within CA264_04225at 977.408 kb on + strand, within CA264_04225at 977.414 kb on + strand, within CA264_04225at 977.414 kb on + strand, within CA264_04225at 977.415 kb on - strand, within CA264_04225at 977.415 kb on - strand, within CA264_04225at 977.493 kb on + strandat 977.493 kb on + strandat 977.494 kb on - strandat 977.494 kb on - strandat 977.597 kb on + strand, within CA264_04230at 977.624 kb on + strand, within CA264_04230at 977.624 kb on + strand, within CA264_04230at 977.626 kb on + strand, within CA264_04230at 977.631 kb on + strand, within CA264_04230at 977.642 kb on + strand, within CA264_04230at 977.718 kb on + strand, within CA264_04230at 977.771 kb on - strand, within CA264_04230at 977.771 kb on - strand, within CA264_04230at 977.780 kb on + strand, within CA264_04230at 977.780 kb on + strand, within CA264_04230at 978.050 kb on - strandat 978.057 kb on + strandat 978.058 kb on - strandat 978.058 kb on - strandat 978.058 kb on - strandat 978.058 kb on - strandat 978.139 kb on + strand, within CA264_04235at 978.139 kb on + strand, within CA264_04235at 978.140 kb on - strand, within CA264_04235at 978.142 kb on + strand, within CA264_04235at 978.142 kb on + strand, within CA264_04235at 978.143 kb on - strand, within CA264_04235at 978.143 kb on - strand, within CA264_04235at 978.148 kb on + strand, within CA264_04235at 978.196 kb on + strand, within CA264_04235

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Spectinomycin 0.08 mg/ml
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974,340 - CA264_04215 0.38 +0.3
974,359 - CA264_04215 0.40 -0.2
974,364 - CA264_04215 0.40 +0.0
974,390 - CA264_04215 0.42 -0.1
974,533 + CA264_04215 0.51 -1.1
974,534 - CA264_04215 0.51 -0.6
974,731 + CA264_04215 0.63 -0.7
974,731 + CA264_04215 0.63 +0.2
974,732 - CA264_04215 0.63 -2.4
974,761 + CA264_04215 0.65 +0.2
974,762 - CA264_04215 0.65 -0.3
974,763 + CA264_04215 0.65 +0.2
974,834 - CA264_04215 0.70 -0.2
974,844 - CA264_04215 0.70 +0.2
974,844 - CA264_04215 0.70 -0.3
974,873 - CA264_04215 0.72 +0.6
975,151 - CA264_04215 0.90 +1.1
975,181 + +0.5
975,309 + +0.1
975,309 + -0.5
975,309 + -0.7
975,314 + -0.0
975,314 + -0.2
975,315 - +0.1
975,321 - -0.0
975,321 - +0.8
975,321 - -0.0
975,321 - +0.4
975,326 + +0.3
975,327 - -0.1
975,370 - -0.1
975,452 - -0.6
975,486 + +0.2
975,492 + +0.1
975,493 - +0.5
975,619 - CA264_04220 0.16 -0.2
975,619 - CA264_04220 0.16 +0.1
975,624 + CA264_04220 0.17 +0.1
975,624 + CA264_04220 0.17 +0.0
975,624 + CA264_04220 0.17 +0.3
975,624 + CA264_04220 0.17 -0.5
975,709 + CA264_04220 0.21 +0.1
975,710 - CA264_04220 0.21 -0.8
975,710 - CA264_04220 0.21 -0.6
975,710 - CA264_04220 0.21 -0.8
975,779 + CA264_04220 0.25 +0.2
975,780 - CA264_04220 0.25 +0.2
975,781 + CA264_04220 0.25 +0.8
975,803 + CA264_04220 0.26 +1.0
975,804 - CA264_04220 0.26 +0.0
975,876 + CA264_04220 0.30 -0.4
975,887 - CA264_04220 0.31 +0.7
975,887 - CA264_04220 0.31 -0.0
975,887 - CA264_04220 0.31 -1.2
975,979 + CA264_04220 0.35 -0.3
976,025 - CA264_04220 0.38 -0.2
976,081 + CA264_04220 0.41 +0.2
976,081 + CA264_04220 0.41 -0.3
976,136 + CA264_04220 0.44 -0.2
976,136 + CA264_04220 0.44 -0.5
976,139 - CA264_04220 0.44 -0.1
976,139 - CA264_04220 0.44 +0.3
976,201 + CA264_04220 0.47 -0.5
976,240 + CA264_04220 0.49 -0.0
976,240 + CA264_04220 0.49 -0.4
976,241 - CA264_04220 0.49 -0.6
976,243 - CA264_04220 0.49 -0.6
976,243 - CA264_04220 0.49 -0.7
976,386 + CA264_04220 0.57 +0.3
976,386 + CA264_04220 0.57 +0.3
976,387 - CA264_04220 0.57 -0.1
976,418 + CA264_04220 0.59 +0.3
976,436 + CA264_04220 0.60 +0.2
976,437 - CA264_04220 0.60 -0.4
976,437 - CA264_04220 0.60 -0.2
976,529 + CA264_04220 0.65 -0.8
976,591 + CA264_04220 0.68 -0.2
976,592 - CA264_04220 0.68 -0.4
976,592 - CA264_04220 0.68 +0.5
976,595 + CA264_04220 0.68 +0.1
976,595 + CA264_04220 0.68 +0.5
976,595 + CA264_04220 0.68 -0.1
976,596 - CA264_04220 0.68 +0.0
976,596 - CA264_04220 0.68 -0.5
976,596 - CA264_04220 0.68 -0.2
976,597 + CA264_04220 0.68 +0.8
976,604 + CA264_04220 0.69 -0.0
976,605 - CA264_04220 0.69 -1.0
976,681 + CA264_04220 0.73 -0.5
976,681 + CA264_04220 0.73 +0.5
976,722 + CA264_04220 0.75 -0.3
976,777 - CA264_04220 0.78 -0.3
976,816 + CA264_04220 0.80 -1.5
976,816 + CA264_04220 0.80 +0.5
976,817 - CA264_04220 0.80 -0.4
976,817 - CA264_04220 0.80 -0.4
976,879 - CA264_04220 0.83 -0.9
977,003 + CA264_04220 0.90 -0.5
977,003 + CA264_04220 0.90 -0.6
977,003 + CA264_04220 0.90 -0.8
977,004 - CA264_04220 0.90 -0.6
977,017 - -0.0
977,046 - -0.8
977,066 - -1.0
977,144 + -1.1
977,145 - +0.2
977,148 - +1.2
977,148 - -0.7
977,148 - +0.0
977,156 + -0.3
977,214 + -0.6
977,214 + +0.5
977,214 + +0.1
977,214 + -0.0
977,214 + +0.1
977,215 - +0.5
977,215 - +0.1
977,255 - CA264_04225 0.17 -1.0
977,280 + CA264_04225 0.25 -0.9
977,354 + CA264_04225 0.49 +0.0
977,355 - CA264_04225 0.50 +0.0
977,408 + CA264_04225 0.67 -0.6
977,414 + CA264_04225 0.69 +0.2
977,414 + CA264_04225 0.69 +0.8
977,415 - CA264_04225 0.69 -0.9
977,415 - CA264_04225 0.69 -0.3
977,493 + +0.1
977,493 + +0.7
977,494 - -2.7
977,494 - +0.7
977,597 + CA264_04230 0.17 -0.4
977,624 + CA264_04230 0.22 -0.4
977,624 + CA264_04230 0.22 +0.0
977,626 + CA264_04230 0.22 -0.4
977,631 + CA264_04230 0.23 +0.3
977,642 + CA264_04230 0.25 +0.1
977,718 + CA264_04230 0.39 +0.3
977,771 - CA264_04230 0.49 -0.1
977,771 - CA264_04230 0.49 -0.7
977,780 + CA264_04230 0.51 -0.2
977,780 + CA264_04230 0.51 -0.0
978,050 - -0.2
978,057 + +0.2
978,058 - -0.4
978,058 - -1.7
978,058 - +1.0
978,058 - -1.0
978,139 + CA264_04235 0.18 +0.3
978,139 + CA264_04235 0.18 -0.6
978,140 - CA264_04235 0.18 -0.9
978,142 + CA264_04235 0.18 +0.3
978,142 + CA264_04235 0.18 +0.3
978,143 - CA264_04235 0.18 -0.9
978,143 - CA264_04235 0.18 -0.3
978,148 + CA264_04235 0.19 +0.1
978,196 + CA264_04235 0.29 -0.2

Or see this region's nucleotide sequence