Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_03805

Experiment: m.b. Spectinomycin 0.08 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_03795 and CA264_03800 are separated by 352 nucleotidesCA264_03800 and CA264_03805 are separated by 23 nucleotidesCA264_03805 and CA264_03810 are separated by 99 nucleotidesCA264_03810 and CA264_03815 are separated by 6 nucleotides CA264_03795: CA264_03795 - 3-deoxy-manno-octulosonate cytidylyltransferase, at 888,054 to 888,788 _03795 CA264_03800: CA264_03800 - hypothetical protein, at 889,141 to 889,491 _03800 CA264_03805: CA264_03805 - serine protease, at 889,515 to 890,885 _03805 CA264_03810: CA264_03810 - hypothetical protein, at 890,985 to 891,761 _03810 CA264_03815: CA264_03815 - peptidoglycan-binding protein, at 891,768 to 892,748 _03815 Position (kb) 889 890 891Strain fitness (log2 ratio) -3 -2 -1 0 1at 888.780 kb on + strandat 888.795 kb on + strandat 888.796 kb on - strandat 888.803 kb on - strandat 888.821 kb on - strandat 888.905 kb on + strandat 888.991 kb on + strandat 889.042 kb on - strandat 889.042 kb on - strandat 889.058 kb on - strandat 889.073 kb on + strandat 889.076 kb on + strandat 889.077 kb on - strandat 889.077 kb on - strandat 889.078 kb on + strandat 889.095 kb on + strandat 889.140 kb on - strandat 889.145 kb on - strandat 889.238 kb on + strand, within CA264_03800at 889.238 kb on + strand, within CA264_03800at 889.310 kb on + strand, within CA264_03800at 889.324 kb on + strand, within CA264_03800at 889.324 kb on + strand, within CA264_03800at 889.358 kb on - strand, within CA264_03800at 889.376 kb on - strand, within CA264_03800at 889.505 kb on + strandat 889.505 kb on + strandat 889.506 kb on - strandat 889.506 kb on - strandat 889.534 kb on - strandat 889.624 kb on + strandat 889.625 kb on - strandat 889.630 kb on - strandat 889.630 kb on - strandat 889.630 kb on - strandat 889.639 kb on - strandat 889.639 kb on - strandat 889.644 kb on - strandat 889.673 kb on - strand, within CA264_03805at 889.769 kb on + strand, within CA264_03805at 889.769 kb on + strand, within CA264_03805at 889.769 kb on + strand, within CA264_03805at 889.769 kb on + strand, within CA264_03805at 889.851 kb on - strand, within CA264_03805at 889.927 kb on - strand, within CA264_03805at 889.959 kb on - strand, within CA264_03805at 890.056 kb on + strand, within CA264_03805at 890.056 kb on + strand, within CA264_03805at 890.057 kb on - strand, within CA264_03805at 890.059 kb on + strand, within CA264_03805at 890.060 kb on - strand, within CA264_03805at 890.060 kb on - strand, within CA264_03805at 890.060 kb on - strand, within CA264_03805at 890.060 kb on - strand, within CA264_03805at 890.071 kb on + strand, within CA264_03805at 890.072 kb on - strand, within CA264_03805at 890.113 kb on - strand, within CA264_03805at 890.137 kb on + strand, within CA264_03805at 890.153 kb on + strand, within CA264_03805at 890.337 kb on - strand, within CA264_03805at 890.368 kb on - strand, within CA264_03805at 890.368 kb on - strand, within CA264_03805at 890.435 kb on + strand, within CA264_03805at 890.449 kb on + strand, within CA264_03805at 890.449 kb on + strand, within CA264_03805at 890.449 kb on + strand, within CA264_03805at 890.450 kb on - strand, within CA264_03805at 890.458 kb on + strand, within CA264_03805at 890.459 kb on - strand, within CA264_03805at 890.530 kb on + strand, within CA264_03805at 890.596 kb on + strand, within CA264_03805at 890.596 kb on + strand, within CA264_03805at 890.596 kb on + strand, within CA264_03805at 890.597 kb on - strand, within CA264_03805at 890.597 kb on - strand, within CA264_03805at 890.846 kb on - strandat 890.848 kb on + strandat 890.848 kb on + strandat 890.848 kb on + strandat 890.848 kb on + strandat 890.849 kb on - strandat 890.902 kb on - strandat 890.923 kb on - strandat 890.925 kb on + strandat 890.946 kb on - strandat 890.946 kb on - strandat 890.946 kb on - strandat 890.946 kb on - strandat 890.951 kb on - strandat 890.951 kb on - strandat 890.951 kb on - strandat 890.963 kb on + strandat 890.963 kb on + strandat 891.067 kb on - strand, within CA264_03810at 891.451 kb on - strand, within CA264_03810at 891.529 kb on + strand, within CA264_03810at 891.529 kb on + strand, within CA264_03810at 891.530 kb on - strand, within CA264_03810at 891.595 kb on + strand, within CA264_03810at 891.595 kb on + strand, within CA264_03810at 891.596 kb on - strand, within CA264_03810at 891.608 kb on - strand, within CA264_03810at 891.710 kb on - strandat 891.773 kb on - strandat 891.773 kb on - strandat 891.773 kb on - strandat 891.859 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Spectinomycin 0.08 mg/ml
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888,780 + -0.0
888,795 + -0.6
888,796 - -0.2
888,803 - +0.1
888,821 - -0.6
888,905 + -0.3
888,991 + -0.5
889,042 - -1.2
889,042 - -0.3
889,058 - -1.2
889,073 + +0.6
889,076 + -0.1
889,077 - -0.3
889,077 - -0.4
889,078 + -0.1
889,095 + -0.0
889,140 - +0.8
889,145 - +0.4
889,238 + CA264_03800 0.28 +0.3
889,238 + CA264_03800 0.28 -0.3
889,310 + CA264_03800 0.48 -0.2
889,324 + CA264_03800 0.52 +1.2
889,324 + CA264_03800 0.52 -0.3
889,358 - CA264_03800 0.62 +0.4
889,376 - CA264_03800 0.67 +0.2
889,505 + -0.3
889,505 + -0.8
889,506 - +0.1
889,506 - +1.0
889,534 - +0.4
889,624 + -0.7
889,625 - -0.2
889,630 - +0.6
889,630 - -0.5
889,630 - -0.0
889,639 - -0.8
889,639 - +0.8
889,644 - +0.0
889,673 - CA264_03805 0.12 -0.1
889,769 + CA264_03805 0.19 +0.4
889,769 + CA264_03805 0.19 +0.6
889,769 + CA264_03805 0.19 -0.2
889,769 + CA264_03805 0.19 -0.3
889,851 - CA264_03805 0.25 -0.3
889,927 - CA264_03805 0.30 -0.0
889,959 - CA264_03805 0.32 -0.9
890,056 + CA264_03805 0.39 +1.4
890,056 + CA264_03805 0.39 +0.2
890,057 - CA264_03805 0.40 -0.1
890,059 + CA264_03805 0.40 -0.6
890,060 - CA264_03805 0.40 -0.0
890,060 - CA264_03805 0.40 -0.3
890,060 - CA264_03805 0.40 -0.4
890,060 - CA264_03805 0.40 +0.5
890,071 + CA264_03805 0.41 -0.9
890,072 - CA264_03805 0.41 +0.1
890,113 - CA264_03805 0.44 -1.4
890,137 + CA264_03805 0.45 -0.2
890,153 + CA264_03805 0.47 -1.5
890,337 - CA264_03805 0.60 +0.6
890,368 - CA264_03805 0.62 -0.6
890,368 - CA264_03805 0.62 +0.4
890,435 + CA264_03805 0.67 -0.4
890,449 + CA264_03805 0.68 +0.3
890,449 + CA264_03805 0.68 -0.6
890,449 + CA264_03805 0.68 -0.6
890,450 - CA264_03805 0.68 +0.6
890,458 + CA264_03805 0.69 +0.1
890,459 - CA264_03805 0.69 -0.5
890,530 + CA264_03805 0.74 -1.0
890,596 + CA264_03805 0.79 +0.3
890,596 + CA264_03805 0.79 +0.1
890,596 + CA264_03805 0.79 -1.2
890,597 - CA264_03805 0.79 +0.2
890,597 - CA264_03805 0.79 -1.6
890,846 - -0.6
890,848 + +0.4
890,848 + -0.5
890,848 + -0.6
890,848 + -0.0
890,849 - +0.1
890,902 - -0.5
890,923 - -1.5
890,925 + -0.7
890,946 - -0.4
890,946 - -1.3
890,946 - +0.8
890,946 - -1.1
890,951 - -0.4
890,951 - +0.0
890,951 - -0.5
890,963 + -1.4
890,963 + -1.1
891,067 - CA264_03810 0.11 -1.5
891,451 - CA264_03810 0.60 -0.6
891,529 + CA264_03810 0.70 -1.5
891,529 + CA264_03810 0.70 -1.0
891,530 - CA264_03810 0.70 +0.2
891,595 + CA264_03810 0.79 -0.4
891,595 + CA264_03810 0.79 -0.2
891,596 - CA264_03810 0.79 -3.3
891,608 - CA264_03810 0.80 +0.3
891,710 - -2.6
891,773 - -0.1
891,773 - -0.4
891,773 - +0.2
891,859 + -0.6

Or see this region's nucleotide sequence