Experiment: m.b. Spectinomycin 0.08 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_00865 and CA264_00870 are separated by 75 nucleotides CA264_00870 and CA264_00875 are separated by 20 nucleotides CA264_00875 and CA264_00880 are separated by 258 nucleotides
CA264_00865: CA264_00865 - dihydroorotate dehydrogenase (quinone), at 184,207 to 185,238
_00865
CA264_00870: CA264_00870 - DNA translocase FtsK, at 185,314 to 187,944
_00870
CA264_00875: CA264_00875 - cell envelope biogenesis protein LolA, at 187,965 to 188,609
_00875
CA264_00880: CA264_00880 - orotidine 5'-phosphate decarboxylase, at 188,868 to 189,695
_00880
Position (kb) 185
186
187
188 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 184.335 kb on + strand, within CA264_00865 at 184.377 kb on + strand, within CA264_00865 at 184.685 kb on - strand, within CA264_00865 at 184.685 kb on - strand, within CA264_00865 at 184.691 kb on - strand, within CA264_00865 at 184.724 kb on - strand, within CA264_00865 at 185.182 kb on - strand at 185.205 kb on - strand at 185.241 kb on + strand at 185.241 kb on + strand at 185.241 kb on + strand at 185.241 kb on + strand at 185.242 kb on - strand at 185.297 kb on + strand at 185.297 kb on + strand at 185.301 kb on + strand at 185.475 kb on - strand at 187.950 kb on + strand at 187.951 kb on - strand at 187.951 kb on - strand at 187.953 kb on + strand at 187.953 kb on + strand at 187.954 kb on - strand at 187.984 kb on + strand at 188.073 kb on + strand, within CA264_00875 at 188.178 kb on - strand, within CA264_00875 at 188.232 kb on + strand, within CA264_00875 at 188.232 kb on + strand, within CA264_00875 at 188.232 kb on + strand, within CA264_00875 at 188.322 kb on + strand, within CA264_00875 at 188.322 kb on + strand, within CA264_00875 at 188.324 kb on + strand, within CA264_00875 at 188.335 kb on - strand, within CA264_00875 at 188.336 kb on + strand, within CA264_00875 at 188.336 kb on + strand, within CA264_00875 at 188.336 kb on + strand, within CA264_00875 at 188.336 kb on + strand, within CA264_00875 at 188.336 kb on + strand, within CA264_00875 at 188.336 kb on + strand, within CA264_00875 at 188.337 kb on - strand, within CA264_00875 at 188.346 kb on + strand, within CA264_00875 at 188.390 kb on - strand, within CA264_00875 at 188.431 kb on + strand, within CA264_00875 at 188.439 kb on + strand, within CA264_00875 at 188.440 kb on - strand, within CA264_00875 at 188.504 kb on + strand, within CA264_00875 at 188.505 kb on - strand, within CA264_00875 at 188.509 kb on - strand, within CA264_00875 at 188.510 kb on + strand, within CA264_00875 at 188.559 kb on - strand at 188.578 kb on - strand at 188.578 kb on - strand at 188.579 kb on + strand at 188.603 kb on - strand at 188.608 kb on - strand at 188.622 kb on + strand at 188.623 kb on - strand at 188.627 kb on + strand at 188.665 kb on + strand at 188.669 kb on + strand at 188.757 kb on + strand at 188.757 kb on + strand at 188.758 kb on - strand at 188.758 kb on - strand at 188.780 kb on + strand at 188.780 kb on + strand at 188.843 kb on + strand at 188.844 kb on - strand at 188.914 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Spectinomycin 0.08 mg/ml remove 184,335 + CA264_00865 0.12 -0.2 184,377 + CA264_00865 0.16 -1.2 184,685 - CA264_00865 0.46 -0.7 184,685 - CA264_00865 0.46 -0.9 184,691 - CA264_00865 0.47 -0.4 184,724 - CA264_00865 0.50 -0.6 185,182 - -0.9 185,205 - -1.4 185,241 + -0.5 185,241 + -0.2 185,241 + -1.1 185,241 + -0.0 185,242 - +0.7 185,297 + -1.2 185,297 + -0.3 185,301 + -2.3 185,475 - +0.9 187,950 + -0.3 187,951 - +0.2 187,951 - +0.2 187,953 + -0.5 187,953 + -0.1 187,954 - -0.2 187,984 + -1.7 188,073 + CA264_00875 0.17 -2.9 188,178 - CA264_00875 0.33 -1.7 188,232 + CA264_00875 0.41 -0.9 188,232 + CA264_00875 0.41 -1.3 188,232 + CA264_00875 0.41 -0.9 188,322 + CA264_00875 0.55 -2.5 188,322 + CA264_00875 0.55 +0.1 188,324 + CA264_00875 0.56 -0.9 188,335 - CA264_00875 0.57 -3.9 188,336 + CA264_00875 0.58 -1.7 188,336 + CA264_00875 0.58 -2.7 188,336 + CA264_00875 0.58 +0.9 188,336 + CA264_00875 0.58 -2.0 188,336 + CA264_00875 0.58 -0.1 188,336 + CA264_00875 0.58 -1.4 188,337 - CA264_00875 0.58 -1.1 188,346 + CA264_00875 0.59 -2.1 188,390 - CA264_00875 0.66 +0.1 188,431 + CA264_00875 0.72 -1.4 188,439 + CA264_00875 0.73 -3.2 188,440 - CA264_00875 0.74 -2.0 188,504 + CA264_00875 0.84 -3.0 188,505 - CA264_00875 0.84 -2.0 188,509 - CA264_00875 0.84 -2.1 188,510 + CA264_00875 0.84 -0.6 188,559 - -2.5 188,578 - -1.3 188,578 - -1.4 188,579 + +0.4 188,603 - -1.8 188,608 - -0.2 188,622 + -0.1 188,623 - -0.0 188,627 + -0.8 188,665 + -0.7 188,669 + -0.1 188,757 + -1.0 188,757 + -0.5 188,758 - -1.4 188,758 - +0.4 188,780 + -0.7 188,780 + -0.5 188,843 + -1.3 188,844 - +0.2 188,914 - -0.6
Or see this region's nucleotide sequence