Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_00080

Experiment: m.b. Spectinomycin 0.08 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_00070 and CA264_00075 are separated by 38 nucleotidesCA264_00075 and CA264_00080 are separated by 27 nucleotidesCA264_00080 and CA264_00085 are separated by 119 nucleotidesCA264_00085 and CA264_00090 overlap by 4 nucleotides CA264_00070: CA264_00070 - hypothetical protein, at 18,949 to 20,298 _00070 CA264_00075: CA264_00075 - hypothetical protein, at 20,337 to 20,600 _00075 CA264_00080: CA264_00080 - cation acetate symporter, at 20,628 to 22,319 _00080 CA264_00085: CA264_00085 - hypothetical protein, at 22,439 to 22,657 _00085 CA264_00090: CA264_00090 - histidine kinase, at 22,654 to 25,377 _00090 Position (kb) 20 21 22 23Strain fitness (log2 ratio) -2 -1 0 1 2at 19.644 kb on + strand, within CA264_00070at 19.644 kb on + strand, within CA264_00070at 19.645 kb on - strand, within CA264_00070at 19.700 kb on - strand, within CA264_00070at 19.710 kb on + strand, within CA264_00070at 19.711 kb on - strand, within CA264_00070at 19.823 kb on + strand, within CA264_00070at 19.823 kb on + strand, within CA264_00070at 19.824 kb on - strand, within CA264_00070at 19.824 kb on - strand, within CA264_00070at 19.895 kb on - strand, within CA264_00070at 19.895 kb on - strand, within CA264_00070at 19.906 kb on + strand, within CA264_00070at 19.907 kb on - strand, within CA264_00070at 19.907 kb on - strand, within CA264_00070at 19.907 kb on - strand, within CA264_00070at 19.912 kb on + strand, within CA264_00070at 19.913 kb on - strand, within CA264_00070at 20.038 kb on + strand, within CA264_00070at 20.098 kb on - strand, within CA264_00070at 20.141 kb on + strand, within CA264_00070at 20.141 kb on + strand, within CA264_00070at 20.142 kb on - strand, within CA264_00070at 20.142 kb on - strand, within CA264_00070at 20.235 kb on + strandat 20.257 kb on + strandat 20.258 kb on - strandat 20.272 kb on - strandat 20.311 kb on - strandat 20.323 kb on + strandat 20.324 kb on - strandat 20.324 kb on - strandat 20.331 kb on + strandat 20.331 kb on + strandat 20.428 kb on - strand, within CA264_00075at 20.638 kb on + strandat 20.639 kb on - strandat 20.639 kb on - strandat 20.650 kb on - strandat 20.667 kb on - strandat 20.727 kb on + strandat 20.728 kb on - strandat 20.728 kb on - strandat 20.804 kb on + strand, within CA264_00080at 20.822 kb on + strand, within CA264_00080at 20.823 kb on - strand, within CA264_00080at 20.823 kb on - strand, within CA264_00080at 20.853 kb on + strand, within CA264_00080at 20.853 kb on + strand, within CA264_00080at 20.925 kb on - strand, within CA264_00080at 20.930 kb on + strand, within CA264_00080at 20.959 kb on - strand, within CA264_00080at 20.962 kb on - strand, within CA264_00080at 21.005 kb on + strand, within CA264_00080at 21.015 kb on - strand, within CA264_00080at 21.019 kb on - strand, within CA264_00080at 21.149 kb on + strand, within CA264_00080at 21.150 kb on - strand, within CA264_00080at 21.192 kb on + strand, within CA264_00080at 21.193 kb on - strand, within CA264_00080at 21.207 kb on - strand, within CA264_00080at 21.212 kb on + strand, within CA264_00080at 21.213 kb on - strand, within CA264_00080at 21.334 kb on - strand, within CA264_00080at 21.353 kb on + strand, within CA264_00080at 21.415 kb on + strand, within CA264_00080at 21.498 kb on + strand, within CA264_00080at 21.535 kb on - strand, within CA264_00080at 21.654 kb on + strand, within CA264_00080at 21.674 kb on - strand, within CA264_00080at 21.689 kb on - strand, within CA264_00080at 21.745 kb on + strand, within CA264_00080at 21.813 kb on - strand, within CA264_00080at 21.818 kb on + strand, within CA264_00080at 21.819 kb on - strand, within CA264_00080at 21.899 kb on - strand, within CA264_00080at 21.942 kb on + strand, within CA264_00080at 21.943 kb on - strand, within CA264_00080at 22.013 kb on + strand, within CA264_00080at 22.099 kb on - strand, within CA264_00080at 22.205 kb on + strandat 22.222 kb on + strandat 22.328 kb on - strandat 22.375 kb on - strandat 22.423 kb on + strandat 22.423 kb on + strandat 22.424 kb on - strandat 22.424 kb on - strandat 22.424 kb on - strandat 22.424 kb on - strandat 22.427 kb on + strandat 22.428 kb on - strandat 22.525 kb on + strand, within CA264_00085at 22.562 kb on + strand, within CA264_00085at 22.562 kb on + strand, within CA264_00085at 22.563 kb on - strand, within CA264_00085at 22.563 kb on - strand, within CA264_00085at 22.606 kb on - strand, within CA264_00085at 22.618 kb on - strand, within CA264_00085at 22.625 kb on - strand, within CA264_00085at 22.768 kb on + strandat 22.772 kb on + strandat 22.772 kb on + strandat 22.773 kb on - strandat 22.773 kb on - strandat 22.773 kb on - strandat 22.773 kb on - strandat 22.773 kb on - strandat 22.773 kb on - strandat 22.774 kb on + strandat 22.817 kb on - strandat 22.867 kb on + strandat 22.868 kb on - strandat 22.878 kb on + strandat 22.879 kb on - strandat 22.965 kb on + strand, within CA264_00090at 23.041 kb on + strand, within CA264_00090at 23.041 kb on + strand, within CA264_00090at 23.042 kb on - strand, within CA264_00090at 23.102 kb on + strand, within CA264_00090at 23.137 kb on - strand, within CA264_00090at 23.186 kb on + strand, within CA264_00090at 23.186 kb on + strand, within CA264_00090at 23.186 kb on + strand, within CA264_00090at 23.187 kb on - strand, within CA264_00090at 23.284 kb on + strand, within CA264_00090at 23.285 kb on - strand, within CA264_00090at 23.285 kb on - strand, within CA264_00090at 23.285 kb on - strand, within CA264_00090

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Spectinomycin 0.08 mg/ml
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19,644 + CA264_00070 0.51 +0.1
19,644 + CA264_00070 0.51 -0.4
19,645 - CA264_00070 0.52 -0.1
19,700 - CA264_00070 0.56 -0.1
19,710 + CA264_00070 0.56 -1.0
19,711 - CA264_00070 0.56 -2.4
19,823 + CA264_00070 0.65 -1.5
19,823 + CA264_00070 0.65 +0.3
19,824 - CA264_00070 0.65 +0.8
19,824 - CA264_00070 0.65 -0.1
19,895 - CA264_00070 0.70 -0.8
19,895 - CA264_00070 0.70 +0.3
19,906 + CA264_00070 0.71 -0.6
19,907 - CA264_00070 0.71 +0.3
19,907 - CA264_00070 0.71 +0.6
19,907 - CA264_00070 0.71 +2.1
19,912 + CA264_00070 0.71 -0.6
19,913 - CA264_00070 0.71 -0.1
20,038 + CA264_00070 0.81 -0.1
20,098 - CA264_00070 0.85 +2.1
20,141 + CA264_00070 0.88 +0.3
20,141 + CA264_00070 0.88 +0.7
20,142 - CA264_00070 0.88 -0.1
20,142 - CA264_00070 0.88 +0.3
20,235 + -1.4
20,257 + -0.4
20,258 - -0.0
20,272 - +0.4
20,311 - +1.4
20,323 + -0.7
20,324 - -0.3
20,324 - -0.4
20,331 + +0.2
20,331 + -0.1
20,428 - CA264_00075 0.34 -1.0
20,638 + +1.4
20,639 - -0.3
20,639 - -0.3
20,650 - -1.0
20,667 - +0.0
20,727 + -0.1
20,728 - -0.9
20,728 - +0.3
20,804 + CA264_00080 0.10 +0.9
20,822 + CA264_00080 0.11 -0.3
20,823 - CA264_00080 0.12 +0.2
20,823 - CA264_00080 0.12 -0.7
20,853 + CA264_00080 0.13 +0.1
20,853 + CA264_00080 0.13 +0.2
20,925 - CA264_00080 0.18 -0.2
20,930 + CA264_00080 0.18 +0.7
20,959 - CA264_00080 0.20 +0.4
20,962 - CA264_00080 0.20 +0.9
21,005 + CA264_00080 0.22 -1.2
21,015 - CA264_00080 0.23 -0.2
21,019 - CA264_00080 0.23 -0.3
21,149 + CA264_00080 0.31 +0.3
21,150 - CA264_00080 0.31 +0.3
21,192 + CA264_00080 0.33 +1.6
21,193 - CA264_00080 0.33 +0.3
21,207 - CA264_00080 0.34 +0.6
21,212 + CA264_00080 0.35 +0.1
21,213 - CA264_00080 0.35 -0.8
21,334 - CA264_00080 0.42 +1.1
21,353 + CA264_00080 0.43 -0.3
21,415 + CA264_00080 0.47 -0.9
21,498 + CA264_00080 0.51 -0.9
21,535 - CA264_00080 0.54 -0.3
21,654 + CA264_00080 0.61 +1.2
21,674 - CA264_00080 0.62 +0.2
21,689 - CA264_00080 0.63 +0.3
21,745 + CA264_00080 0.66 -0.3
21,813 - CA264_00080 0.70 +0.0
21,818 + CA264_00080 0.70 -0.0
21,819 - CA264_00080 0.70 -0.9
21,899 - CA264_00080 0.75 +1.2
21,942 + CA264_00080 0.78 -0.2
21,943 - CA264_00080 0.78 +0.2
22,013 + CA264_00080 0.82 +0.1
22,099 - CA264_00080 0.87 +1.7
22,205 + -0.2
22,222 + +0.6
22,328 - -1.6
22,375 - -0.6
22,423 + +0.2
22,423 + -0.3
22,424 - +0.9
22,424 - +0.0
22,424 - -0.0
22,424 - -0.5
22,427 + -1.5
22,428 - +0.3
22,525 + CA264_00085 0.39 +1.4
22,562 + CA264_00085 0.56 -0.9
22,562 + CA264_00085 0.56 -0.1
22,563 - CA264_00085 0.57 -0.2
22,563 - CA264_00085 0.57 +1.0
22,606 - CA264_00085 0.76 -0.2
22,618 - CA264_00085 0.82 +1.1
22,625 - CA264_00085 0.85 +0.2
22,768 + -2.1
22,772 + +0.4
22,772 + +0.3
22,773 - +0.8
22,773 - -0.2
22,773 - +0.3
22,773 - +0.1
22,773 - -0.0
22,773 - -0.4
22,774 + -0.7
22,817 - +0.3
22,867 + -0.3
22,868 - +0.1
22,878 + -1.1
22,879 - +0.9
22,965 + CA264_00090 0.11 -1.0
23,041 + CA264_00090 0.14 +0.1
23,041 + CA264_00090 0.14 -0.3
23,042 - CA264_00090 0.14 -0.7
23,102 + CA264_00090 0.16 -0.7
23,137 - CA264_00090 0.18 +1.0
23,186 + CA264_00090 0.20 +1.4
23,186 + CA264_00090 0.20 -0.1
23,186 + CA264_00090 0.20 -0.4
23,187 - CA264_00090 0.20 -0.3
23,284 + CA264_00090 0.23 -0.3
23,285 - CA264_00090 0.23 +0.2
23,285 - CA264_00090 0.23 -1.1
23,285 - CA264_00090 0.23 -0.3

Or see this region's nucleotide sequence