Experiment: Cytidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00170 and PS417_00175 are separated by 65 nucleotides PS417_00175 and PS417_00180 are separated by 136 nucleotides PS417_00180 and PS417_00185 overlap by 1 nucleotides
PS417_00170: PS417_00170 - glucarate transporter, at 35,939 to 37,246
_00170
PS417_00175: PS417_00175 - CigR, at 37,312 to 37,752
_00175
PS417_00180: PS417_00180 - tryptophan synthase subunit alpha, at 37,889 to 38,698
_00180
PS417_00185: PS417_00185 - tryptophan synthase subunit beta, at 38,698 to 39,939
_00185
Position (kb) 37
38
39 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 36.944 kb on + strand, within PS417_00170 at 36.944 kb on + strand, within PS417_00170 at 36.944 kb on + strand, within PS417_00170 at 36.944 kb on + strand, within PS417_00170 at 36.944 kb on + strand, within PS417_00170 at 36.944 kb on + strand, within PS417_00170 at 36.944 kb on + strand, within PS417_00170 at 36.944 kb on + strand, within PS417_00170 at 36.945 kb on - strand, within PS417_00170 at 36.945 kb on - strand, within PS417_00170 at 36.966 kb on + strand, within PS417_00170 at 36.966 kb on + strand, within PS417_00170 at 37.163 kb on - strand at 37.163 kb on - strand at 37.166 kb on + strand at 37.166 kb on + strand at 37.166 kb on + strand at 37.167 kb on - strand at 37.167 kb on - strand at 37.203 kb on - strand at 37.203 kb on - strand at 37.203 kb on - strand at 37.203 kb on - strand at 37.203 kb on - strand at 37.206 kb on + strand at 37.206 kb on + strand at 37.206 kb on + strand at 37.206 kb on + strand at 37.207 kb on - strand at 37.207 kb on - strand at 37.207 kb on - strand at 37.244 kb on + strand at 37.298 kb on - strand at 37.298 kb on - strand at 37.340 kb on + strand at 37.340 kb on + strand at 37.341 kb on - strand at 37.454 kb on + strand, within PS417_00175 at 37.826 kb on - strand at 37.826 kb on - strand at 37.894 kb on + strand at 37.894 kb on + strand at 37.894 kb on + strand at 37.895 kb on - strand at 38.175 kb on + strand, within PS417_00180 at 38.294 kb on - strand, within PS417_00180 at 38.395 kb on - strand, within PS417_00180 at 38.729 kb on - strand at 38.729 kb on - strand at 38.940 kb on - strand, within PS417_00185 at 39.354 kb on - strand, within PS417_00185 at 39.513 kb on - strand, within PS417_00185 at 39.513 kb on - strand, within PS417_00185 at 39.513 kb on - strand, within PS417_00185 at 39.646 kb on - strand, within PS417_00185
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine (C) remove 36,944 + PS417_00170 0.77 -1.2 36,944 + PS417_00170 0.77 -1.5 36,944 + PS417_00170 0.77 -0.6 36,944 + PS417_00170 0.77 +0.0 36,944 + PS417_00170 0.77 -0.2 36,944 + PS417_00170 0.77 +0.2 36,944 + PS417_00170 0.77 +1.2 36,944 + PS417_00170 0.77 +0.1 36,945 - PS417_00170 0.77 -0.1 36,945 - PS417_00170 0.77 -0.3 36,966 + PS417_00170 0.79 -0.1 36,966 + PS417_00170 0.79 -0.5 37,163 - +0.2 37,163 - -0.0 37,166 + -0.4 37,166 + -0.2 37,166 + -0.4 37,167 - -0.1 37,167 - +0.2 37,203 - -0.5 37,203 - +1.6 37,203 - +0.2 37,203 - +0.1 37,203 - -0.1 37,206 + +1.2 37,206 + +0.6 37,206 + -0.3 37,206 + -0.5 37,207 - +0.0 37,207 - -0.2 37,207 - +0.1 37,244 + +0.0 37,298 - +0.3 37,298 - +0.0 37,340 + +1.2 37,340 + +0.3 37,341 - +0.1 37,454 + PS417_00175 0.32 -0.3 37,826 - -0.2 37,826 - -0.1 37,894 + +1.8 37,894 + +0.1 37,894 + +0.4 37,895 - -1.3 38,175 + PS417_00180 0.35 -2.7 38,294 - PS417_00180 0.50 -2.8 38,395 - PS417_00180 0.62 -4.8 38,729 - -0.5 38,729 - +0.1 38,940 - PS417_00185 0.19 -2.3 39,354 - PS417_00185 0.53 -3.8 39,513 - PS417_00185 0.66 -3.7 39,513 - PS417_00185 0.66 -1.2 39,513 - PS417_00185 0.66 -4.2 39,646 - PS417_00185 0.76 -3.9
Or see this region's nucleotide sequence