Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0617

Experiment: L-Rhamnose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0616 and Echvi_0617 are separated by 120 nucleotidesEchvi_0617 and Echvi_0618 overlap by 38 nucleotides Echvi_0616: Echvi_0616 - Membrane proteins related to metalloendopeptidases, at 689,263 to 690,141 _0616 Echvi_0617: Echvi_0617 - hypothetical protein, at 690,262 to 692,892 _0617 Echvi_0618: Echvi_0618 - Membrane carboxypeptidase/penicillin-binding protein, at 692,855 to 695,212 _0618 Position (kb) 690 691 692 693Strain fitness (log2 ratio) -2 -1 0 1 2 3at 689.278 kb on - strandat 689.309 kb on + strandat 689.309 kb on + strandat 689.310 kb on - strandat 689.310 kb on - strandat 689.314 kb on + strandat 689.315 kb on - strandat 689.315 kb on - strandat 689.315 kb on - strandat 689.355 kb on + strand, within Echvi_0616at 689.356 kb on - strand, within Echvi_0616at 689.356 kb on - strand, within Echvi_0616at 689.414 kb on - strand, within Echvi_0616at 689.416 kb on + strand, within Echvi_0616at 689.417 kb on - strand, within Echvi_0616at 689.424 kb on + strand, within Echvi_0616at 689.467 kb on + strand, within Echvi_0616at 689.474 kb on + strand, within Echvi_0616at 689.474 kb on + strand, within Echvi_0616at 689.474 kb on + strand, within Echvi_0616at 689.475 kb on - strand, within Echvi_0616at 689.475 kb on - strand, within Echvi_0616at 689.653 kb on - strand, within Echvi_0616at 689.653 kb on - strand, within Echvi_0616at 689.734 kb on + strandat 689.838 kb on + strand, within Echvi_0616at 689.842 kb on - strand, within Echvi_0616at 689.842 kb on - strand, within Echvi_0616at 689.849 kb on + strand, within Echvi_0616at 689.866 kb on + strand, within Echvi_0616at 689.867 kb on - strand, within Echvi_0616at 689.906 kb on + strand, within Echvi_0616at 689.906 kb on + strand, within Echvi_0616at 689.907 kb on - strand, within Echvi_0616at 689.907 kb on - strand, within Echvi_0616at 689.908 kb on + strand, within Echvi_0616at 689.974 kb on + strand, within Echvi_0616at 689.977 kb on + strand, within Echvi_0616at 689.977 kb on + strand, within Echvi_0616at 689.978 kb on - strand, within Echvi_0616at 690.010 kb on - strand, within Echvi_0616at 690.021 kb on + strand, within Echvi_0616at 690.050 kb on - strand, within Echvi_0616at 690.050 kb on - strand, within Echvi_0616at 690.098 kb on + strandat 690.102 kb on + strandat 690.134 kb on - strandat 690.155 kb on + strandat 690.171 kb on - strandat 690.174 kb on - strandat 690.190 kb on - strandat 690.225 kb on + strandat 690.336 kb on + strandat 690.337 kb on - strandat 690.349 kb on + strandat 690.349 kb on + strandat 690.349 kb on + strandat 690.380 kb on - strandat 690.401 kb on + strandat 690.401 kb on + strandat 690.402 kb on - strandat 690.423 kb on + strandat 690.423 kb on + strandat 690.433 kb on + strandat 690.434 kb on - strandat 690.445 kb on + strandat 690.445 kb on + strandat 690.445 kb on + strandat 690.445 kb on + strandat 690.445 kb on + strandat 690.446 kb on - strandat 690.446 kb on - strandat 690.446 kb on - strandat 690.446 kb on - strandat 690.446 kb on - strandat 690.446 kb on - strandat 690.447 kb on + strandat 690.448 kb on - strandat 690.448 kb on - strandat 690.448 kb on - strandat 690.466 kb on + strandat 690.466 kb on + strandat 690.467 kb on - strandat 690.572 kb on + strand, within Echvi_0617at 690.572 kb on + strand, within Echvi_0617at 690.583 kb on + strand, within Echvi_0617at 690.583 kb on + strand, within Echvi_0617at 690.584 kb on - strand, within Echvi_0617at 690.584 kb on - strand, within Echvi_0617at 690.610 kb on + strand, within Echvi_0617at 690.611 kb on - strand, within Echvi_0617at 690.636 kb on + strand, within Echvi_0617at 690.643 kb on + strand, within Echvi_0617at 690.644 kb on - strand, within Echvi_0617at 690.650 kb on - strand, within Echvi_0617at 690.650 kb on - strand, within Echvi_0617at 690.659 kb on + strand, within Echvi_0617at 690.660 kb on - strand, within Echvi_0617at 690.719 kb on + strand, within Echvi_0617at 690.748 kb on + strand, within Echvi_0617at 690.748 kb on + strand, within Echvi_0617at 690.748 kb on + strand, within Echvi_0617at 690.749 kb on - strand, within Echvi_0617at 690.749 kb on - strand, within Echvi_0617at 690.749 kb on - strand, within Echvi_0617at 690.749 kb on - strand, within Echvi_0617at 690.749 kb on - strand, within Echvi_0617at 690.749 kb on - strand, within Echvi_0617at 690.749 kb on - strand, within Echvi_0617at 690.808 kb on + strand, within Echvi_0617at 690.826 kb on + strand, within Echvi_0617at 690.826 kb on + strand, within Echvi_0617at 690.826 kb on + strand, within Echvi_0617at 690.826 kb on + strand, within Echvi_0617at 690.826 kb on + strand, within Echvi_0617at 690.827 kb on - strand, within Echvi_0617at 690.827 kb on - strand, within Echvi_0617at 690.827 kb on - strand, within Echvi_0617at 690.827 kb on - strand, within Echvi_0617at 690.827 kb on - strand, within Echvi_0617at 690.829 kb on + strand, within Echvi_0617at 690.829 kb on + strand, within Echvi_0617at 690.829 kb on + strand, within Echvi_0617at 690.829 kb on + strand, within Echvi_0617at 690.829 kb on + strand, within Echvi_0617at 690.829 kb on + strand, within Echvi_0617at 690.830 kb on - strand, within Echvi_0617at 690.830 kb on - strand, within Echvi_0617at 690.924 kb on + strand, within Echvi_0617at 690.924 kb on + strand, within Echvi_0617at 690.941 kb on - strand, within Echvi_0617at 690.980 kb on - strand, within Echvi_0617at 691.009 kb on + strand, within Echvi_0617at 691.035 kb on - strand, within Echvi_0617at 691.035 kb on - strand, within Echvi_0617at 691.035 kb on - strand, within Echvi_0617at 691.035 kb on - strand, within Echvi_0617at 691.036 kb on + strand, within Echvi_0617at 691.036 kb on + strand, within Echvi_0617at 691.037 kb on - strand, within Echvi_0617at 691.077 kb on + strand, within Echvi_0617at 691.077 kb on + strand, within Echvi_0617at 691.078 kb on - strand, within Echvi_0617at 691.096 kb on + strand, within Echvi_0617at 691.097 kb on - strand, within Echvi_0617at 691.108 kb on + strand, within Echvi_0617at 691.109 kb on - strand, within Echvi_0617at 691.109 kb on - strand, within Echvi_0617at 691.110 kb on + strand, within Echvi_0617at 691.110 kb on + strand, within Echvi_0617at 691.110 kb on + strand, within Echvi_0617at 691.111 kb on - strand, within Echvi_0617at 691.111 kb on - strand, within Echvi_0617at 691.111 kb on - strand, within Echvi_0617at 691.111 kb on - strand, within Echvi_0617at 691.257 kb on + strand, within Echvi_0617at 691.257 kb on + strand, within Echvi_0617at 691.257 kb on + strand, within Echvi_0617at 691.257 kb on + strand, within Echvi_0617at 691.257 kb on + strand, within Echvi_0617at 691.258 kb on - strand, within Echvi_0617at 691.280 kb on + strand, within Echvi_0617at 691.281 kb on - strand, within Echvi_0617at 691.318 kb on + strand, within Echvi_0617at 691.319 kb on - strand, within Echvi_0617at 691.319 kb on - strand, within Echvi_0617at 691.322 kb on - strand, within Echvi_0617at 691.322 kb on - strand, within Echvi_0617at 691.322 kb on - strand, within Echvi_0617at 691.366 kb on + strand, within Echvi_0617at 691.366 kb on + strand, within Echvi_0617at 691.366 kb on + strand, within Echvi_0617at 691.394 kb on + strand, within Echvi_0617at 691.405 kb on + strand, within Echvi_0617at 691.406 kb on - strand, within Echvi_0617at 691.417 kb on + strand, within Echvi_0617at 691.417 kb on + strand, within Echvi_0617at 691.418 kb on - strand, within Echvi_0617at 691.424 kb on + strand, within Echvi_0617at 691.425 kb on - strand, within Echvi_0617at 691.611 kb on + strand, within Echvi_0617at 691.611 kb on + strand, within Echvi_0617at 691.612 kb on - strand, within Echvi_0617at 691.612 kb on - strand, within Echvi_0617at 691.612 kb on - strand, within Echvi_0617at 691.612 kb on - strand, within Echvi_0617at 691.618 kb on + strand, within Echvi_0617at 691.618 kb on + strand, within Echvi_0617at 691.803 kb on + strand, within Echvi_0617at 691.804 kb on - strand, within Echvi_0617at 691.951 kb on + strand, within Echvi_0617at 692.005 kb on + strand, within Echvi_0617at 692.006 kb on - strand, within Echvi_0617at 692.006 kb on - strand, within Echvi_0617at 692.009 kb on - strand, within Echvi_0617at 692.017 kb on + strand, within Echvi_0617at 692.017 kb on + strand, within Echvi_0617at 692.017 kb on + strand, within Echvi_0617at 692.017 kb on + strand, within Echvi_0617at 692.056 kb on + strand, within Echvi_0617at 692.056 kb on + strand, within Echvi_0617at 692.057 kb on - strand, within Echvi_0617at 692.057 kb on - strand, within Echvi_0617at 692.169 kb on + strand, within Echvi_0617at 692.179 kb on + strand, within Echvi_0617at 692.179 kb on + strand, within Echvi_0617at 692.179 kb on + strand, within Echvi_0617at 692.179 kb on + strand, within Echvi_0617at 692.204 kb on - strand, within Echvi_0617at 692.245 kb on + strand, within Echvi_0617at 692.246 kb on - strand, within Echvi_0617at 692.261 kb on + strand, within Echvi_0617at 692.262 kb on - strand, within Echvi_0617at 692.273 kb on + strand, within Echvi_0617at 692.273 kb on + strand, within Echvi_0617at 692.344 kb on + strand, within Echvi_0617at 692.345 kb on - strand, within Echvi_0617at 692.347 kb on - strand, within Echvi_0617at 692.391 kb on + strand, within Echvi_0617at 692.391 kb on + strand, within Echvi_0617at 692.396 kb on + strand, within Echvi_0617at 692.397 kb on - strand, within Echvi_0617at 692.469 kb on - strand, within Echvi_0617at 692.505 kb on + strand, within Echvi_0617at 692.528 kb on + strand, within Echvi_0617at 692.529 kb on - strand, within Echvi_0617at 692.529 kb on - strand, within Echvi_0617at 692.529 kb on - strand, within Echvi_0617at 692.529 kb on - strand, within Echvi_0617at 692.529 kb on - strand, within Echvi_0617at 692.529 kb on - strand, within Echvi_0617at 692.530 kb on + strand, within Echvi_0617at 692.531 kb on - strand, within Echvi_0617at 692.531 kb on - strand, within Echvi_0617at 692.532 kb on + strand, within Echvi_0617at 692.533 kb on - strand, within Echvi_0617at 692.533 kb on - strand, within Echvi_0617at 692.533 kb on - strand, within Echvi_0617at 692.558 kb on + strand, within Echvi_0617at 692.635 kb on - strandat 692.658 kb on - strandat 692.770 kb on + strandat 692.792 kb on + strandat 692.837 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose (C)
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689,278 - +0.2
689,309 + +1.0
689,309 + -0.2
689,310 - -0.2
689,310 - -0.1
689,314 + -0.2
689,315 - -1.7
689,315 - -1.7
689,315 - +0.6
689,355 + Echvi_0616 0.10 -1.1
689,356 - Echvi_0616 0.11 +1.5
689,356 - Echvi_0616 0.11 -0.6
689,414 - Echvi_0616 0.17 -1.8
689,416 + Echvi_0616 0.17 -0.2
689,417 - Echvi_0616 0.18 +0.4
689,424 + Echvi_0616 0.18 -0.5
689,467 + Echvi_0616 0.23 -0.6
689,474 + Echvi_0616 0.24 +0.2
689,474 + Echvi_0616 0.24 -0.2
689,474 + Echvi_0616 0.24 -1.6
689,475 - Echvi_0616 0.24 -0.2
689,475 - Echvi_0616 0.24 -1.0
689,653 - Echvi_0616 0.44 -1.4
689,653 - Echvi_0616 0.44 +0.8
689,734 + +1.1
689,838 + Echvi_0616 0.65 +0.3
689,842 - Echvi_0616 0.66 -0.4
689,842 - Echvi_0616 0.66 -0.9
689,849 + Echvi_0616 0.67 -1.4
689,866 + Echvi_0616 0.69 -0.2
689,867 - Echvi_0616 0.69 +0.0
689,906 + Echvi_0616 0.73 -0.2
689,906 + Echvi_0616 0.73 +0.8
689,907 - Echvi_0616 0.73 -0.7
689,907 - Echvi_0616 0.73 +0.6
689,908 + Echvi_0616 0.73 -0.0
689,974 + Echvi_0616 0.81 +0.5
689,977 + Echvi_0616 0.81 +0.9
689,977 + Echvi_0616 0.81 +0.2
689,978 - Echvi_0616 0.81 -0.7
690,010 - Echvi_0616 0.85 -1.1
690,021 + Echvi_0616 0.86 +0.3
690,050 - Echvi_0616 0.90 -0.1
690,050 - Echvi_0616 0.90 -1.1
690,098 + -2.4
690,102 + +0.1
690,134 - -0.4
690,155 + +0.6
690,171 - +0.5
690,174 - +1.4
690,190 - +1.3
690,225 + -1.1
690,336 + +1.2
690,337 - +0.6
690,349 + +1.7
690,349 + +1.3
690,349 + +1.1
690,380 - +1.0
690,401 + +1.4
690,401 + +1.0
690,402 - +0.6
690,423 + +1.4
690,423 + +1.4
690,433 + +0.9
690,434 - +1.1
690,445 + -0.6
690,445 + +0.9
690,445 + +0.9
690,445 + +0.2
690,445 + +2.3
690,446 - +1.4
690,446 - +0.1
690,446 - +1.0
690,446 - +1.4
690,446 - +0.8
690,446 - +1.4
690,447 + +1.3
690,448 - +1.2
690,448 - +1.1
690,448 - +0.7
690,466 + +0.2
690,466 + +3.1
690,467 - +1.9
690,572 + Echvi_0617 0.12 +1.3
690,572 + Echvi_0617 0.12 +0.8
690,583 + Echvi_0617 0.12 +2.2
690,583 + Echvi_0617 0.12 +1.5
690,584 - Echvi_0617 0.12 +2.2
690,584 - Echvi_0617 0.12 +0.9
690,610 + Echvi_0617 0.13 +0.9
690,611 - Echvi_0617 0.13 +1.3
690,636 + Echvi_0617 0.14 +1.3
690,643 + Echvi_0617 0.14 +1.3
690,644 - Echvi_0617 0.15 +0.6
690,650 - Echvi_0617 0.15 +1.2
690,650 - Echvi_0617 0.15 +0.2
690,659 + Echvi_0617 0.15 +1.1
690,660 - Echvi_0617 0.15 +1.1
690,719 + Echvi_0617 0.17 +1.5
690,748 + Echvi_0617 0.18 -0.4
690,748 + Echvi_0617 0.18 +1.9
690,748 + Echvi_0617 0.18 +1.4
690,749 - Echvi_0617 0.19 +1.4
690,749 - Echvi_0617 0.19 +2.5
690,749 - Echvi_0617 0.19 +1.1
690,749 - Echvi_0617 0.19 -0.4
690,749 - Echvi_0617 0.19 +1.5
690,749 - Echvi_0617 0.19 +1.4
690,749 - Echvi_0617 0.19 +0.8
690,808 + Echvi_0617 0.21 +1.5
690,826 + Echvi_0617 0.21 +1.3
690,826 + Echvi_0617 0.21 +0.6
690,826 + Echvi_0617 0.21 +1.5
690,826 + Echvi_0617 0.21 +1.1
690,826 + Echvi_0617 0.21 +1.8
690,827 - Echvi_0617 0.21 +0.9
690,827 - Echvi_0617 0.21 +1.1
690,827 - Echvi_0617 0.21 +0.2
690,827 - Echvi_0617 0.21 +0.8
690,827 - Echvi_0617 0.21 +1.5
690,829 + Echvi_0617 0.22 +0.8
690,829 + Echvi_0617 0.22 +1.1
690,829 + Echvi_0617 0.22 +1.1
690,829 + Echvi_0617 0.22 +1.2
690,829 + Echvi_0617 0.22 +1.2
690,829 + Echvi_0617 0.22 -0.2
690,830 - Echvi_0617 0.22 -0.3
690,830 - Echvi_0617 0.22 +1.0
690,924 + Echvi_0617 0.25 +1.5
690,924 + Echvi_0617 0.25 +0.8
690,941 - Echvi_0617 0.26 +1.0
690,980 - Echvi_0617 0.27 +0.7
691,009 + Echvi_0617 0.28 +1.0
691,035 - Echvi_0617 0.29 +2.3
691,035 - Echvi_0617 0.29 +0.3
691,035 - Echvi_0617 0.29 +1.5
691,035 - Echvi_0617 0.29 +1.4
691,036 + Echvi_0617 0.29 +0.9
691,036 + Echvi_0617 0.29 +0.9
691,037 - Echvi_0617 0.29 +2.0
691,077 + Echvi_0617 0.31 +1.3
691,077 + Echvi_0617 0.31 +1.2
691,078 - Echvi_0617 0.31 +0.9
691,096 + Echvi_0617 0.32 +0.6
691,097 - Echvi_0617 0.32 +0.8
691,108 + Echvi_0617 0.32 +0.2
691,109 - Echvi_0617 0.32 +1.1
691,109 - Echvi_0617 0.32 +1.9
691,110 + Echvi_0617 0.32 +1.5
691,110 + Echvi_0617 0.32 -0.0
691,110 + Echvi_0617 0.32 +1.0
691,111 - Echvi_0617 0.32 +1.2
691,111 - Echvi_0617 0.32 +2.2
691,111 - Echvi_0617 0.32 +1.2
691,111 - Echvi_0617 0.32 +0.6
691,257 + Echvi_0617 0.38 +1.8
691,257 + Echvi_0617 0.38 +0.4
691,257 + Echvi_0617 0.38 +1.2
691,257 + Echvi_0617 0.38 +1.0
691,257 + Echvi_0617 0.38 +1.1
691,258 - Echvi_0617 0.38 +1.3
691,280 + Echvi_0617 0.39 +1.6
691,281 - Echvi_0617 0.39 +1.4
691,318 + Echvi_0617 0.40 +1.2
691,319 - Echvi_0617 0.40 +1.1
691,319 - Echvi_0617 0.40 +1.2
691,322 - Echvi_0617 0.40 +0.3
691,322 - Echvi_0617 0.40 +1.0
691,322 - Echvi_0617 0.40 +1.1
691,366 + Echvi_0617 0.42 +1.4
691,366 + Echvi_0617 0.42 +0.5
691,366 + Echvi_0617 0.42 +0.5
691,394 + Echvi_0617 0.43 +0.4
691,405 + Echvi_0617 0.43 +0.0
691,406 - Echvi_0617 0.43 +0.2
691,417 + Echvi_0617 0.44 -1.2
691,417 + Echvi_0617 0.44 -0.2
691,418 - Echvi_0617 0.44 +0.5
691,424 + Echvi_0617 0.44 +1.0
691,425 - Echvi_0617 0.44 +1.3
691,611 + Echvi_0617 0.51 +1.8
691,611 + Echvi_0617 0.51 +0.0
691,612 - Echvi_0617 0.51 +1.4
691,612 - Echvi_0617 0.51 +1.0
691,612 - Echvi_0617 0.51 +0.3
691,612 - Echvi_0617 0.51 +0.7
691,618 + Echvi_0617 0.52 +0.6
691,618 + Echvi_0617 0.52 -0.0
691,803 + Echvi_0617 0.59 +0.5
691,804 - Echvi_0617 0.59 -0.3
691,951 + Echvi_0617 0.64 -0.5
692,005 + Echvi_0617 0.66 -1.2
692,006 - Echvi_0617 0.66 -0.7
692,006 - Echvi_0617 0.66 +0.1
692,009 - Echvi_0617 0.66 -0.9
692,017 + Echvi_0617 0.67 +0.8
692,017 + Echvi_0617 0.67 -0.6
692,017 + Echvi_0617 0.67 -1.1
692,017 + Echvi_0617 0.67 -0.1
692,056 + Echvi_0617 0.68 -0.2
692,056 + Echvi_0617 0.68 +0.4
692,057 - Echvi_0617 0.68 -1.3
692,057 - Echvi_0617 0.68 +0.1
692,169 + Echvi_0617 0.72 -0.8
692,179 + Echvi_0617 0.73 +0.3
692,179 + Echvi_0617 0.73 -0.3
692,179 + Echvi_0617 0.73 -0.4
692,179 + Echvi_0617 0.73 -0.8
692,204 - Echvi_0617 0.74 -1.2
692,245 + Echvi_0617 0.75 +1.0
692,246 - Echvi_0617 0.75 -1.1
692,261 + Echvi_0617 0.76 +2.3
692,262 - Echvi_0617 0.76 -0.7
692,273 + Echvi_0617 0.76 +0.4
692,273 + Echvi_0617 0.76 -0.2
692,344 + Echvi_0617 0.79 +0.6
692,345 - Echvi_0617 0.79 +0.1
692,347 - Echvi_0617 0.79 +1.4
692,391 + Echvi_0617 0.81 -0.3
692,391 + Echvi_0617 0.81 -0.4
692,396 + Echvi_0617 0.81 +1.1
692,397 - Echvi_0617 0.81 +0.3
692,469 - Echvi_0617 0.84 -0.4
692,505 + Echvi_0617 0.85 -1.2
692,528 + Echvi_0617 0.86 -0.2
692,529 - Echvi_0617 0.86 -0.6
692,529 - Echvi_0617 0.86 -0.4
692,529 - Echvi_0617 0.86 -0.0
692,529 - Echvi_0617 0.86 -0.5
692,529 - Echvi_0617 0.86 -0.7
692,529 - Echvi_0617 0.86 -0.4
692,530 + Echvi_0617 0.86 -0.2
692,531 - Echvi_0617 0.86 -1.0
692,531 - Echvi_0617 0.86 +0.2
692,532 + Echvi_0617 0.86 +1.4
692,533 - Echvi_0617 0.86 -0.0
692,533 - Echvi_0617 0.86 +0.1
692,533 - Echvi_0617 0.86 +0.5
692,558 + Echvi_0617 0.87 +1.3
692,635 - +0.3
692,658 - +0.2
692,770 + +0.9
692,792 + -1.8
692,837 + +0.1

Or see this region's nucleotide sequence