Experiment: L-Rhamnose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0613 and Echvi_0614 are separated by 155 nucleotides Echvi_0614 and Echvi_0615 overlap by 41 nucleotides Echvi_0615 and Echvi_0616 are separated by 44 nucleotides Echvi_0616 and Echvi_0617 are separated by 120 nucleotides
Echvi_0613: Echvi_0613 - hypothetical protein, at 688,115 to 688,468
_0613
Echvi_0614: Echvi_0614 - hypothetical protein, at 688,624 to 688,851
_0614
Echvi_0615: Echvi_0615 - Integral membrane protein CcmA involved in cell shape determination, at 688,811 to 689,218
_0615
Echvi_0616: Echvi_0616 - Membrane proteins related to metalloendopeptidases, at 689,263 to 690,141
_0616
Echvi_0617: Echvi_0617 - hypothetical protein, at 690,262 to 692,892
_0617
Position (kb) 689
690
691 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 688.293 kb on - strand, within Echvi_0613 at 688.424 kb on + strand, within Echvi_0613 at 688.442 kb on + strand at 688.547 kb on + strand at 688.582 kb on - strand at 688.592 kb on - strand at 688.592 kb on - strand at 688.625 kb on + strand at 688.650 kb on + strand, within Echvi_0614 at 688.662 kb on + strand, within Echvi_0614 at 688.684 kb on + strand, within Echvi_0614 at 688.685 kb on - strand, within Echvi_0614 at 688.786 kb on + strand, within Echvi_0614 at 688.786 kb on + strand, within Echvi_0614 at 688.787 kb on - strand, within Echvi_0614 at 688.787 kb on - strand, within Echvi_0614 at 688.790 kb on + strand, within Echvi_0614 at 688.790 kb on + strand, within Echvi_0614 at 688.790 kb on + strand, within Echvi_0614 at 688.791 kb on - strand, within Echvi_0614 at 688.791 kb on - strand, within Echvi_0614 at 688.795 kb on + strand, within Echvi_0614 at 688.857 kb on - strand, within Echvi_0615 at 688.882 kb on + strand, within Echvi_0615 at 689.030 kb on + strand, within Echvi_0615 at 689.030 kb on + strand, within Echvi_0615 at 689.031 kb on - strand, within Echvi_0615 at 689.031 kb on - strand, within Echvi_0615 at 689.031 kb on - strand, within Echvi_0615 at 689.031 kb on - strand, within Echvi_0615 at 689.118 kb on - strand, within Echvi_0615 at 689.118 kb on - strand, within Echvi_0615 at 689.142 kb on - strand, within Echvi_0615 at 689.154 kb on - strand, within Echvi_0615 at 689.167 kb on + strand, within Echvi_0615 at 689.180 kb on - strand at 689.204 kb on - strand at 689.252 kb on - strand at 689.252 kb on - strand at 689.257 kb on + strand at 689.258 kb on - strand at 689.258 kb on - strand at 689.278 kb on - strand at 689.309 kb on + strand at 689.309 kb on + strand at 689.310 kb on - strand at 689.310 kb on - strand at 689.314 kb on + strand at 689.315 kb on - strand at 689.315 kb on - strand at 689.315 kb on - strand at 689.355 kb on + strand, within Echvi_0616 at 689.356 kb on - strand, within Echvi_0616 at 689.356 kb on - strand, within Echvi_0616 at 689.414 kb on - strand, within Echvi_0616 at 689.416 kb on + strand, within Echvi_0616 at 689.417 kb on - strand, within Echvi_0616 at 689.424 kb on + strand, within Echvi_0616 at 689.467 kb on + strand, within Echvi_0616 at 689.474 kb on + strand, within Echvi_0616 at 689.474 kb on + strand, within Echvi_0616 at 689.474 kb on + strand, within Echvi_0616 at 689.475 kb on - strand, within Echvi_0616 at 689.475 kb on - strand, within Echvi_0616 at 689.653 kb on - strand, within Echvi_0616 at 689.653 kb on - strand, within Echvi_0616 at 689.734 kb on + strand at 689.838 kb on + strand, within Echvi_0616 at 689.842 kb on - strand, within Echvi_0616 at 689.842 kb on - strand, within Echvi_0616 at 689.849 kb on + strand, within Echvi_0616 at 689.866 kb on + strand, within Echvi_0616 at 689.867 kb on - strand, within Echvi_0616 at 689.906 kb on + strand, within Echvi_0616 at 689.906 kb on + strand, within Echvi_0616 at 689.907 kb on - strand, within Echvi_0616 at 689.907 kb on - strand, within Echvi_0616 at 689.908 kb on + strand, within Echvi_0616 at 689.974 kb on + strand, within Echvi_0616 at 689.977 kb on + strand, within Echvi_0616 at 689.977 kb on + strand, within Echvi_0616 at 689.978 kb on - strand, within Echvi_0616 at 690.010 kb on - strand, within Echvi_0616 at 690.021 kb on + strand, within Echvi_0616 at 690.050 kb on - strand, within Echvi_0616 at 690.050 kb on - strand, within Echvi_0616 at 690.098 kb on + strand at 690.102 kb on + strand at 690.134 kb on - strand at 690.155 kb on + strand at 690.171 kb on - strand at 690.174 kb on - strand at 690.190 kb on - strand at 690.225 kb on + strand at 690.336 kb on + strand at 690.337 kb on - strand at 690.349 kb on + strand at 690.349 kb on + strand at 690.349 kb on + strand at 690.380 kb on - strand at 690.401 kb on + strand at 690.401 kb on + strand at 690.402 kb on - strand at 690.423 kb on + strand at 690.423 kb on + strand at 690.433 kb on + strand at 690.434 kb on - strand at 690.445 kb on + strand at 690.445 kb on + strand at 690.445 kb on + strand at 690.445 kb on + strand at 690.445 kb on + strand at 690.446 kb on - strand at 690.446 kb on - strand at 690.446 kb on - strand at 690.446 kb on - strand at 690.446 kb on - strand at 690.446 kb on - strand at 690.447 kb on + strand at 690.448 kb on - strand at 690.448 kb on - strand at 690.448 kb on - strand at 690.466 kb on + strand at 690.466 kb on + strand at 690.467 kb on - strand at 690.572 kb on + strand, within Echvi_0617 at 690.572 kb on + strand, within Echvi_0617 at 690.583 kb on + strand, within Echvi_0617 at 690.583 kb on + strand, within Echvi_0617 at 690.584 kb on - strand, within Echvi_0617 at 690.584 kb on - strand, within Echvi_0617 at 690.610 kb on + strand, within Echvi_0617 at 690.611 kb on - strand, within Echvi_0617 at 690.636 kb on + strand, within Echvi_0617 at 690.643 kb on + strand, within Echvi_0617 at 690.644 kb on - strand, within Echvi_0617 at 690.650 kb on - strand, within Echvi_0617 at 690.650 kb on - strand, within Echvi_0617 at 690.659 kb on + strand, within Echvi_0617 at 690.660 kb on - strand, within Echvi_0617 at 690.719 kb on + strand, within Echvi_0617 at 690.748 kb on + strand, within Echvi_0617 at 690.748 kb on + strand, within Echvi_0617 at 690.748 kb on + strand, within Echvi_0617 at 690.749 kb on - strand, within Echvi_0617 at 690.749 kb on - strand, within Echvi_0617 at 690.749 kb on - strand, within Echvi_0617 at 690.749 kb on - strand, within Echvi_0617 at 690.749 kb on - strand, within Echvi_0617 at 690.749 kb on - strand, within Echvi_0617 at 690.749 kb on - strand, within Echvi_0617 at 690.808 kb on + strand, within Echvi_0617 at 690.826 kb on + strand, within Echvi_0617 at 690.826 kb on + strand, within Echvi_0617 at 690.826 kb on + strand, within Echvi_0617 at 690.826 kb on + strand, within Echvi_0617 at 690.826 kb on + strand, within Echvi_0617 at 690.827 kb on - strand, within Echvi_0617 at 690.827 kb on - strand, within Echvi_0617 at 690.827 kb on - strand, within Echvi_0617 at 690.827 kb on - strand, within Echvi_0617 at 690.827 kb on - strand, within Echvi_0617 at 690.829 kb on + strand, within Echvi_0617 at 690.829 kb on + strand, within Echvi_0617 at 690.829 kb on + strand, within Echvi_0617 at 690.829 kb on + strand, within Echvi_0617 at 690.829 kb on + strand, within Echvi_0617 at 690.829 kb on + strand, within Echvi_0617 at 690.830 kb on - strand, within Echvi_0617 at 690.830 kb on - strand, within Echvi_0617 at 690.924 kb on + strand, within Echvi_0617 at 690.924 kb on + strand, within Echvi_0617 at 690.941 kb on - strand, within Echvi_0617 at 690.980 kb on - strand, within Echvi_0617 at 691.009 kb on + strand, within Echvi_0617 at 691.035 kb on - strand, within Echvi_0617 at 691.035 kb on - strand, within Echvi_0617 at 691.035 kb on - strand, within Echvi_0617 at 691.035 kb on - strand, within Echvi_0617 at 691.036 kb on + strand, within Echvi_0617 at 691.036 kb on + strand, within Echvi_0617 at 691.037 kb on - strand, within Echvi_0617 at 691.077 kb on + strand, within Echvi_0617 at 691.077 kb on + strand, within Echvi_0617 at 691.078 kb on - strand, within Echvi_0617 at 691.096 kb on + strand, within Echvi_0617 at 691.097 kb on - strand, within Echvi_0617 at 691.108 kb on + strand, within Echvi_0617 at 691.109 kb on - strand, within Echvi_0617 at 691.109 kb on - strand, within Echvi_0617 at 691.110 kb on + strand, within Echvi_0617 at 691.110 kb on + strand, within Echvi_0617 at 691.110 kb on + strand, within Echvi_0617 at 691.111 kb on - strand, within Echvi_0617 at 691.111 kb on - strand, within Echvi_0617 at 691.111 kb on - strand, within Echvi_0617 at 691.111 kb on - strand, within Echvi_0617
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose (C) remove 688,293 - Echvi_0613 0.50 -0.5 688,424 + Echvi_0613 0.87 +0.1 688,442 + -0.8 688,547 + +0.9 688,582 - -0.1 688,592 - +0.6 688,592 - -0.5 688,625 + -0.2 688,650 + Echvi_0614 0.11 -0.2 688,662 + Echvi_0614 0.17 -0.7 688,684 + Echvi_0614 0.26 -0.1 688,685 - Echvi_0614 0.27 +1.1 688,786 + Echvi_0614 0.71 +0.6 688,786 + Echvi_0614 0.71 -1.4 688,787 - Echvi_0614 0.71 -0.9 688,787 - Echvi_0614 0.71 -1.0 688,790 + Echvi_0614 0.73 +0.4 688,790 + Echvi_0614 0.73 +0.7 688,790 + Echvi_0614 0.73 +0.6 688,791 - Echvi_0614 0.73 -0.2 688,791 - Echvi_0614 0.73 -1.0 688,795 + Echvi_0614 0.75 +0.3 688,857 - Echvi_0615 0.11 -0.4 688,882 + Echvi_0615 0.17 +0.5 689,030 + Echvi_0615 0.54 +0.4 689,030 + Echvi_0615 0.54 +0.9 689,031 - Echvi_0615 0.54 +0.0 689,031 - Echvi_0615 0.54 +1.2 689,031 - Echvi_0615 0.54 -3.6 689,031 - Echvi_0615 0.54 -1.3 689,118 - Echvi_0615 0.75 -0.3 689,118 - Echvi_0615 0.75 -1.6 689,142 - Echvi_0615 0.81 -0.2 689,154 - Echvi_0615 0.84 -0.1 689,167 + Echvi_0615 0.87 +0.1 689,180 - -0.5 689,204 - +0.5 689,252 - +1.4 689,252 - +0.7 689,257 + +0.2 689,258 - -1.2 689,258 - +0.1 689,278 - +0.2 689,309 + +1.0 689,309 + -0.2 689,310 - -0.2 689,310 - -0.1 689,314 + -0.2 689,315 - -1.7 689,315 - -1.7 689,315 - +0.6 689,355 + Echvi_0616 0.10 -1.1 689,356 - Echvi_0616 0.11 +1.5 689,356 - Echvi_0616 0.11 -0.6 689,414 - Echvi_0616 0.17 -1.8 689,416 + Echvi_0616 0.17 -0.2 689,417 - Echvi_0616 0.18 +0.4 689,424 + Echvi_0616 0.18 -0.5 689,467 + Echvi_0616 0.23 -0.6 689,474 + Echvi_0616 0.24 +0.2 689,474 + Echvi_0616 0.24 -0.2 689,474 + Echvi_0616 0.24 -1.6 689,475 - Echvi_0616 0.24 -0.2 689,475 - Echvi_0616 0.24 -1.0 689,653 - Echvi_0616 0.44 -1.4 689,653 - Echvi_0616 0.44 +0.8 689,734 + +1.1 689,838 + Echvi_0616 0.65 +0.3 689,842 - Echvi_0616 0.66 -0.4 689,842 - Echvi_0616 0.66 -0.9 689,849 + Echvi_0616 0.67 -1.4 689,866 + Echvi_0616 0.69 -0.2 689,867 - Echvi_0616 0.69 +0.0 689,906 + Echvi_0616 0.73 -0.2 689,906 + Echvi_0616 0.73 +0.8 689,907 - Echvi_0616 0.73 -0.7 689,907 - Echvi_0616 0.73 +0.6 689,908 + Echvi_0616 0.73 -0.0 689,974 + Echvi_0616 0.81 +0.5 689,977 + Echvi_0616 0.81 +0.9 689,977 + Echvi_0616 0.81 +0.2 689,978 - Echvi_0616 0.81 -0.7 690,010 - Echvi_0616 0.85 -1.1 690,021 + Echvi_0616 0.86 +0.3 690,050 - Echvi_0616 0.90 -0.1 690,050 - Echvi_0616 0.90 -1.1 690,098 + -2.4 690,102 + +0.1 690,134 - -0.4 690,155 + +0.6 690,171 - +0.5 690,174 - +1.4 690,190 - +1.3 690,225 + -1.1 690,336 + +1.2 690,337 - +0.6 690,349 + +1.7 690,349 + +1.3 690,349 + +1.1 690,380 - +1.0 690,401 + +1.4 690,401 + +1.0 690,402 - +0.6 690,423 + +1.4 690,423 + +1.4 690,433 + +0.9 690,434 - +1.1 690,445 + -0.6 690,445 + +0.9 690,445 + +0.9 690,445 + +0.2 690,445 + +2.3 690,446 - +1.4 690,446 - +0.1 690,446 - +1.0 690,446 - +1.4 690,446 - +0.8 690,446 - +1.4 690,447 + +1.3 690,448 - +1.2 690,448 - +1.1 690,448 - +0.7 690,466 + +0.2 690,466 + +3.1 690,467 - +1.9 690,572 + Echvi_0617 0.12 +1.3 690,572 + Echvi_0617 0.12 +0.8 690,583 + Echvi_0617 0.12 +2.2 690,583 + Echvi_0617 0.12 +1.5 690,584 - Echvi_0617 0.12 +2.2 690,584 - Echvi_0617 0.12 +0.9 690,610 + Echvi_0617 0.13 +0.9 690,611 - Echvi_0617 0.13 +1.3 690,636 + Echvi_0617 0.14 +1.3 690,643 + Echvi_0617 0.14 +1.3 690,644 - Echvi_0617 0.15 +0.6 690,650 - Echvi_0617 0.15 +1.2 690,650 - Echvi_0617 0.15 +0.2 690,659 + Echvi_0617 0.15 +1.1 690,660 - Echvi_0617 0.15 +1.1 690,719 + Echvi_0617 0.17 +1.5 690,748 + Echvi_0617 0.18 -0.4 690,748 + Echvi_0617 0.18 +1.9 690,748 + Echvi_0617 0.18 +1.4 690,749 - Echvi_0617 0.19 +1.4 690,749 - Echvi_0617 0.19 +2.5 690,749 - Echvi_0617 0.19 +1.1 690,749 - Echvi_0617 0.19 -0.4 690,749 - Echvi_0617 0.19 +1.5 690,749 - Echvi_0617 0.19 +1.4 690,749 - Echvi_0617 0.19 +0.8 690,808 + Echvi_0617 0.21 +1.5 690,826 + Echvi_0617 0.21 +1.3 690,826 + Echvi_0617 0.21 +0.6 690,826 + Echvi_0617 0.21 +1.5 690,826 + Echvi_0617 0.21 +1.1 690,826 + Echvi_0617 0.21 +1.8 690,827 - Echvi_0617 0.21 +0.9 690,827 - Echvi_0617 0.21 +1.1 690,827 - Echvi_0617 0.21 +0.2 690,827 - Echvi_0617 0.21 +0.8 690,827 - Echvi_0617 0.21 +1.5 690,829 + Echvi_0617 0.22 +0.8 690,829 + Echvi_0617 0.22 +1.1 690,829 + Echvi_0617 0.22 +1.1 690,829 + Echvi_0617 0.22 +1.2 690,829 + Echvi_0617 0.22 +1.2 690,829 + Echvi_0617 0.22 -0.2 690,830 - Echvi_0617 0.22 -0.3 690,830 - Echvi_0617 0.22 +1.0 690,924 + Echvi_0617 0.25 +1.5 690,924 + Echvi_0617 0.25 +0.8 690,941 - Echvi_0617 0.26 +1.0 690,980 - Echvi_0617 0.27 +0.7 691,009 + Echvi_0617 0.28 +1.0 691,035 - Echvi_0617 0.29 +2.3 691,035 - Echvi_0617 0.29 +0.3 691,035 - Echvi_0617 0.29 +1.5 691,035 - Echvi_0617 0.29 +1.4 691,036 + Echvi_0617 0.29 +0.9 691,036 + Echvi_0617 0.29 +0.9 691,037 - Echvi_0617 0.29 +2.0 691,077 + Echvi_0617 0.31 +1.3 691,077 + Echvi_0617 0.31 +1.2 691,078 - Echvi_0617 0.31 +0.9 691,096 + Echvi_0617 0.32 +0.6 691,097 - Echvi_0617 0.32 +0.8 691,108 + Echvi_0617 0.32 +0.2 691,109 - Echvi_0617 0.32 +1.1 691,109 - Echvi_0617 0.32 +1.9 691,110 + Echvi_0617 0.32 +1.5 691,110 + Echvi_0617 0.32 -0.0 691,110 + Echvi_0617 0.32 +1.0 691,111 - Echvi_0617 0.32 +1.2 691,111 - Echvi_0617 0.32 +2.2 691,111 - Echvi_0617 0.32 +1.2 691,111 - Echvi_0617 0.32 +0.6
Or see this region's nucleotide sequence