Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0424

Experiment: L-Rhamnose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0423 and Echvi_0424 are separated by 1 nucleotidesEchvi_0424 and Echvi_0425 are separated by 171 nucleotidesEchvi_0425 and Echvi_0426 are separated by 13 nucleotidesEchvi_0426 and Echvi_0427 are separated by 16 nucleotides Echvi_0423: Echvi_0423 - Restriction endonuclease S subunits, at 467,825 to 469,027 _0423 Echvi_0424: Echvi_0424 - Type I restriction-modification system methyltransferase subunit, at 469,029 to 470,615 _0424 Echvi_0425: Echvi_0425 - hypothetical protein, at 470,787 to 471,176 _0425 Echvi_0426: Echvi_0426 - hypothetical protein, at 471,190 to 471,501 _0426 Echvi_0427: Echvi_0427 - hypothetical protein, at 471,518 to 471,616 _0427 Position (kb) 469 470 471Strain fitness (log2 ratio) -2 -1 0 1 2 3at 468.042 kb on - strand, within Echvi_0423at 468.048 kb on + strand, within Echvi_0423at 468.048 kb on + strand, within Echvi_0423at 468.048 kb on + strand, within Echvi_0423at 468.048 kb on + strand, within Echvi_0423at 468.049 kb on - strand, within Echvi_0423at 468.049 kb on - strand, within Echvi_0423at 468.049 kb on - strand, within Echvi_0423at 468.070 kb on + strand, within Echvi_0423at 468.090 kb on + strand, within Echvi_0423at 468.101 kb on + strand, within Echvi_0423at 468.104 kb on + strand, within Echvi_0423at 468.105 kb on - strand, within Echvi_0423at 468.175 kb on + strand, within Echvi_0423at 468.175 kb on + strand, within Echvi_0423at 468.176 kb on - strand, within Echvi_0423at 468.176 kb on - strand, within Echvi_0423at 468.214 kb on + strand, within Echvi_0423at 468.226 kb on + strand, within Echvi_0423at 468.239 kb on + strand, within Echvi_0423at 468.239 kb on + strand, within Echvi_0423at 468.240 kb on - strand, within Echvi_0423at 468.246 kb on + strand, within Echvi_0423at 468.275 kb on + strand, within Echvi_0423at 468.283 kb on + strand, within Echvi_0423at 468.299 kb on + strand, within Echvi_0423at 468.325 kb on + strand, within Echvi_0423at 468.326 kb on - strand, within Echvi_0423at 468.373 kb on - strand, within Echvi_0423at 468.406 kb on + strand, within Echvi_0423at 468.407 kb on - strand, within Echvi_0423at 468.410 kb on + strand, within Echvi_0423at 468.411 kb on - strand, within Echvi_0423at 468.492 kb on + strand, within Echvi_0423at 468.493 kb on - strand, within Echvi_0423at 468.592 kb on + strand, within Echvi_0423at 468.611 kb on + strand, within Echvi_0423at 468.612 kb on - strand, within Echvi_0423at 468.617 kb on - strand, within Echvi_0423at 468.631 kb on + strand, within Echvi_0423at 468.631 kb on + strand, within Echvi_0423at 468.688 kb on - strand, within Echvi_0423at 468.701 kb on - strand, within Echvi_0423at 468.703 kb on + strand, within Echvi_0423at 468.704 kb on - strand, within Echvi_0423at 468.780 kb on + strand, within Echvi_0423at 468.781 kb on - strand, within Echvi_0423at 468.781 kb on - strand, within Echvi_0423at 468.781 kb on - strand, within Echvi_0423at 468.809 kb on - strand, within Echvi_0423at 468.844 kb on + strand, within Echvi_0423at 468.852 kb on + strand, within Echvi_0423at 468.853 kb on - strand, within Echvi_0423at 468.861 kb on + strand, within Echvi_0423at 468.862 kb on - strand, within Echvi_0423at 468.862 kb on - strand, within Echvi_0423at 468.881 kb on + strand, within Echvi_0423at 468.894 kb on - strand, within Echvi_0423at 468.903 kb on + strand, within Echvi_0423at 468.907 kb on + strandat 468.982 kb on + strandat 468.982 kb on + strandat 468.991 kb on + strandat 468.992 kb on - strandat 468.992 kb on - strandat 469.027 kb on + strandat 469.038 kb on + strandat 469.059 kb on + strandat 469.062 kb on + strandat 469.094 kb on + strandat 469.094 kb on + strandat 469.123 kb on + strandat 469.139 kb on - strandat 469.139 kb on - strandat 469.139 kb on - strandat 469.160 kb on + strandat 469.167 kb on + strandat 469.174 kb on + strandat 469.368 kb on + strand, within Echvi_0424at 469.410 kb on - strand, within Echvi_0424at 469.427 kb on + strand, within Echvi_0424at 469.450 kb on + strand, within Echvi_0424at 469.479 kb on - strand, within Echvi_0424at 469.479 kb on - strand, within Echvi_0424at 469.534 kb on - strand, within Echvi_0424at 469.553 kb on + strand, within Echvi_0424at 469.602 kb on - strand, within Echvi_0424at 469.677 kb on + strand, within Echvi_0424at 469.678 kb on - strand, within Echvi_0424at 469.678 kb on - strand, within Echvi_0424at 469.805 kb on + strand, within Echvi_0424at 469.929 kb on - strand, within Echvi_0424at 469.999 kb on + strand, within Echvi_0424at 470.000 kb on - strand, within Echvi_0424at 470.000 kb on - strand, within Echvi_0424at 470.000 kb on - strand, within Echvi_0424at 470.000 kb on - strand, within Echvi_0424at 470.000 kb on - strand, within Echvi_0424at 470.055 kb on - strand, within Echvi_0424at 470.096 kb on + strand, within Echvi_0424at 470.099 kb on + strand, within Echvi_0424at 470.100 kb on - strand, within Echvi_0424at 470.243 kb on + strand, within Echvi_0424at 470.243 kb on + strand, within Echvi_0424at 470.270 kb on + strand, within Echvi_0424at 470.312 kb on + strand, within Echvi_0424at 470.312 kb on + strand, within Echvi_0424at 470.312 kb on + strand, within Echvi_0424at 470.312 kb on + strand, within Echvi_0424at 470.312 kb on + strand, within Echvi_0424at 470.382 kb on - strand, within Echvi_0424at 470.515 kb on + strandat 470.529 kb on + strandat 470.622 kb on - strandat 470.625 kb on + strandat 470.630 kb on - strandat 470.633 kb on - strandat 470.665 kb on + strandat 470.665 kb on + strandat 470.763 kb on - strandat 470.779 kb on + strandat 470.806 kb on + strandat 470.830 kb on + strand, within Echvi_0425at 470.830 kb on + strand, within Echvi_0425at 470.831 kb on - strand, within Echvi_0425at 470.839 kb on + strand, within Echvi_0425at 470.852 kb on + strand, within Echvi_0425at 470.886 kb on + strand, within Echvi_0425at 470.887 kb on - strand, within Echvi_0425at 470.887 kb on - strand, within Echvi_0425at 470.887 kb on - strand, within Echvi_0425at 470.919 kb on - strand, within Echvi_0425at 470.944 kb on + strand, within Echvi_0425at 470.945 kb on - strand, within Echvi_0425at 470.959 kb on + strand, within Echvi_0425at 470.965 kb on + strand, within Echvi_0425at 470.966 kb on - strand, within Echvi_0425at 471.022 kb on - strand, within Echvi_0425at 471.024 kb on - strand, within Echvi_0425at 471.036 kb on + strand, within Echvi_0425at 471.037 kb on - strand, within Echvi_0425at 471.071 kb on - strand, within Echvi_0425at 471.074 kb on - strand, within Echvi_0425at 471.074 kb on - strand, within Echvi_0425at 471.081 kb on - strand, within Echvi_0425at 471.092 kb on + strand, within Echvi_0425at 471.092 kb on + strand, within Echvi_0425at 471.093 kb on - strand, within Echvi_0425at 471.093 kb on - strand, within Echvi_0425at 471.129 kb on - strand, within Echvi_0425at 471.129 kb on - strand, within Echvi_0425at 471.249 kb on + strand, within Echvi_0426at 471.249 kb on + strand, within Echvi_0426at 471.250 kb on - strand, within Echvi_0426at 471.250 kb on - strand, within Echvi_0426at 471.276 kb on + strand, within Echvi_0426at 471.277 kb on - strand, within Echvi_0426at 471.294 kb on + strand, within Echvi_0426at 471.294 kb on + strand, within Echvi_0426at 471.294 kb on + strand, within Echvi_0426at 471.294 kb on + strand, within Echvi_0426at 471.294 kb on + strand, within Echvi_0426at 471.294 kb on + strand, within Echvi_0426at 471.295 kb on - strand, within Echvi_0426at 471.295 kb on - strand, within Echvi_0426at 471.295 kb on - strand, within Echvi_0426at 471.295 kb on - strand, within Echvi_0426at 471.302 kb on + strand, within Echvi_0426at 471.302 kb on + strand, within Echvi_0426at 471.303 kb on - strand, within Echvi_0426at 471.309 kb on + strand, within Echvi_0426at 471.311 kb on + strand, within Echvi_0426at 471.311 kb on + strand, within Echvi_0426at 471.311 kb on + strand, within Echvi_0426at 471.311 kb on + strand, within Echvi_0426at 471.311 kb on + strand, within Echvi_0426at 471.311 kb on + strand, within Echvi_0426at 471.311 kb on + strand, within Echvi_0426at 471.312 kb on - strand, within Echvi_0426at 471.312 kb on - strand, within Echvi_0426at 471.312 kb on - strand, within Echvi_0426at 471.312 kb on - strand, within Echvi_0426at 471.315 kb on + strand, within Echvi_0426at 471.346 kb on + strand, within Echvi_0426at 471.430 kb on + strand, within Echvi_0426at 471.449 kb on - strand, within Echvi_0426at 471.449 kb on - strand, within Echvi_0426at 471.449 kb on - strand, within Echvi_0426at 471.470 kb on - strandat 471.474 kb on + strandat 471.474 kb on + strandat 471.474 kb on + strandat 471.475 kb on - strandat 471.492 kb on + strandat 471.501 kb on + strandat 471.502 kb on - strandat 471.510 kb on - strandat 471.513 kb on + strandat 471.548 kb on + strand, within Echvi_0427

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose (C)
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468,042 - Echvi_0423 0.18 -0.3
468,048 + Echvi_0423 0.19 -0.8
468,048 + Echvi_0423 0.19 -0.5
468,048 + Echvi_0423 0.19 +0.3
468,048 + Echvi_0423 0.19 +1.0
468,049 - Echvi_0423 0.19 +0.8
468,049 - Echvi_0423 0.19 -0.3
468,049 - Echvi_0423 0.19 -1.5
468,070 + Echvi_0423 0.20 -1.1
468,090 + Echvi_0423 0.22 -0.2
468,101 + Echvi_0423 0.23 +0.4
468,104 + Echvi_0423 0.23 -0.7
468,105 - Echvi_0423 0.23 -0.4
468,175 + Echvi_0423 0.29 -0.0
468,175 + Echvi_0423 0.29 -0.2
468,176 - Echvi_0423 0.29 -0.0
468,176 - Echvi_0423 0.29 +0.4
468,214 + Echvi_0423 0.32 -0.8
468,226 + Echvi_0423 0.33 +0.0
468,239 + Echvi_0423 0.34 +0.2
468,239 + Echvi_0423 0.34 -0.1
468,240 - Echvi_0423 0.34 -0.7
468,246 + Echvi_0423 0.35 -0.6
468,275 + Echvi_0423 0.37 +0.2
468,283 + Echvi_0423 0.38 -1.2
468,299 + Echvi_0423 0.39 +1.0
468,325 + Echvi_0423 0.42 -0.6
468,326 - Echvi_0423 0.42 +2.0
468,373 - Echvi_0423 0.46 -1.3
468,406 + Echvi_0423 0.48 +0.0
468,407 - Echvi_0423 0.48 -0.5
468,410 + Echvi_0423 0.49 +0.4
468,411 - Echvi_0423 0.49 +0.4
468,492 + Echvi_0423 0.55 -0.1
468,493 - Echvi_0423 0.56 -0.1
468,592 + Echvi_0423 0.64 -0.4
468,611 + Echvi_0423 0.65 -1.1
468,612 - Echvi_0423 0.65 -0.8
468,617 - Echvi_0423 0.66 -0.1
468,631 + Echvi_0423 0.67 +0.4
468,631 + Echvi_0423 0.67 +0.0
468,688 - Echvi_0423 0.72 -0.4
468,701 - Echvi_0423 0.73 +0.1
468,703 + Echvi_0423 0.73 +0.5
468,704 - Echvi_0423 0.73 +2.0
468,780 + Echvi_0423 0.79 -0.1
468,781 - Echvi_0423 0.79 +0.2
468,781 - Echvi_0423 0.79 -0.5
468,781 - Echvi_0423 0.79 +0.3
468,809 - Echvi_0423 0.82 +0.8
468,844 + Echvi_0423 0.85 +0.3
468,852 + Echvi_0423 0.85 -0.0
468,853 - Echvi_0423 0.85 -1.3
468,861 + Echvi_0423 0.86 +1.0
468,862 - Echvi_0423 0.86 -0.9
468,862 - Echvi_0423 0.86 -0.4
468,881 + Echvi_0423 0.88 -0.5
468,894 - Echvi_0423 0.89 +1.0
468,903 + Echvi_0423 0.90 -0.6
468,907 + -0.9
468,982 + +1.0
468,982 + +2.5
468,991 + +0.7
468,992 - -0.5
468,992 - -0.4
469,027 + +1.5
469,038 + -0.0
469,059 + +2.2
469,062 + -0.4
469,094 + -0.0
469,094 + -0.4
469,123 + -1.6
469,139 - -1.7
469,139 - -2.7
469,139 - -2.2
469,160 + +0.9
469,167 + +0.6
469,174 + -0.3
469,368 + Echvi_0424 0.21 -0.6
469,410 - Echvi_0424 0.24 -1.9
469,427 + Echvi_0424 0.25 -0.9
469,450 + Echvi_0424 0.27 -0.1
469,479 - Echvi_0424 0.28 -2.5
469,479 - Echvi_0424 0.28 -0.9
469,534 - Echvi_0424 0.32 -2.0
469,553 + Echvi_0424 0.33 +1.2
469,602 - Echvi_0424 0.36 -1.1
469,677 + Echvi_0424 0.41 -0.7
469,678 - Echvi_0424 0.41 +0.6
469,678 - Echvi_0424 0.41 -1.4
469,805 + Echvi_0424 0.49 -1.5
469,929 - Echvi_0424 0.57 -2.5
469,999 + Echvi_0424 0.61 -0.0
470,000 - Echvi_0424 0.61 -1.9
470,000 - Echvi_0424 0.61 -0.0
470,000 - Echvi_0424 0.61 -2.2
470,000 - Echvi_0424 0.61 -1.2
470,000 - Echvi_0424 0.61 -1.0
470,055 - Echvi_0424 0.65 +2.4
470,096 + Echvi_0424 0.67 -0.2
470,099 + Echvi_0424 0.67 -0.8
470,100 - Echvi_0424 0.67 -1.5
470,243 + Echvi_0424 0.76 -0.3
470,243 + Echvi_0424 0.76 -0.5
470,270 + Echvi_0424 0.78 -2.4
470,312 + Echvi_0424 0.81 -1.3
470,312 + Echvi_0424 0.81 -0.2
470,312 + Echvi_0424 0.81 +0.4
470,312 + Echvi_0424 0.81 -0.9
470,312 + Echvi_0424 0.81 +0.2
470,382 - Echvi_0424 0.85 -2.0
470,515 + -0.4
470,529 + +0.2
470,622 - -1.5
470,625 + -0.0
470,630 - -0.5
470,633 - +0.4
470,665 + -0.4
470,665 + -1.8
470,763 - -1.0
470,779 + -0.5
470,806 + -0.5
470,830 + Echvi_0425 0.11 +0.9
470,830 + Echvi_0425 0.11 -0.3
470,831 - Echvi_0425 0.11 -1.9
470,839 + Echvi_0425 0.13 +0.7
470,852 + Echvi_0425 0.17 -0.7
470,886 + Echvi_0425 0.25 +0.5
470,887 - Echvi_0425 0.26 +0.1
470,887 - Echvi_0425 0.26 -1.0
470,887 - Echvi_0425 0.26 -0.4
470,919 - Echvi_0425 0.34 -0.3
470,944 + Echvi_0425 0.40 +0.7
470,945 - Echvi_0425 0.41 -1.3
470,959 + Echvi_0425 0.44 +0.6
470,965 + Echvi_0425 0.46 +1.1
470,966 - Echvi_0425 0.46 +0.1
471,022 - Echvi_0425 0.60 -0.7
471,024 - Echvi_0425 0.61 -0.7
471,036 + Echvi_0425 0.64 +1.2
471,037 - Echvi_0425 0.64 -0.8
471,071 - Echvi_0425 0.73 +3.4
471,074 - Echvi_0425 0.74 +0.8
471,074 - Echvi_0425 0.74 -0.8
471,081 - Echvi_0425 0.75 +0.1
471,092 + Echvi_0425 0.78 -1.0
471,092 + Echvi_0425 0.78 +0.7
471,093 - Echvi_0425 0.78 -0.8
471,093 - Echvi_0425 0.78 +0.7
471,129 - Echvi_0425 0.88 +0.5
471,129 - Echvi_0425 0.88 +1.9
471,249 + Echvi_0426 0.19 -0.5
471,249 + Echvi_0426 0.19 -1.3
471,250 - Echvi_0426 0.19 -1.3
471,250 - Echvi_0426 0.19 -0.3
471,276 + Echvi_0426 0.28 -0.3
471,277 - Echvi_0426 0.28 -0.6
471,294 + Echvi_0426 0.33 -1.0
471,294 + Echvi_0426 0.33 +1.1
471,294 + Echvi_0426 0.33 +1.3
471,294 + Echvi_0426 0.33 +0.5
471,294 + Echvi_0426 0.33 -0.3
471,294 + Echvi_0426 0.33 -1.0
471,295 - Echvi_0426 0.34 +1.0
471,295 - Echvi_0426 0.34 -1.0
471,295 - Echvi_0426 0.34 -0.0
471,295 - Echvi_0426 0.34 -0.2
471,302 + Echvi_0426 0.36 -0.0
471,302 + Echvi_0426 0.36 +0.4
471,303 - Echvi_0426 0.36 -1.9
471,309 + Echvi_0426 0.38 +1.4
471,311 + Echvi_0426 0.39 -1.1
471,311 + Echvi_0426 0.39 +0.3
471,311 + Echvi_0426 0.39 -1.9
471,311 + Echvi_0426 0.39 -0.2
471,311 + Echvi_0426 0.39 -0.1
471,311 + Echvi_0426 0.39 +1.1
471,311 + Echvi_0426 0.39 -0.6
471,312 - Echvi_0426 0.39 -1.6
471,312 - Echvi_0426 0.39 -1.0
471,312 - Echvi_0426 0.39 -0.4
471,312 - Echvi_0426 0.39 +0.5
471,315 + Echvi_0426 0.40 +0.8
471,346 + Echvi_0426 0.50 -2.3
471,430 + Echvi_0426 0.77 -1.6
471,449 - Echvi_0426 0.83 +0.1
471,449 - Echvi_0426 0.83 +0.6
471,449 - Echvi_0426 0.83 -0.8
471,470 - -1.2
471,474 + -0.4
471,474 + -0.6
471,474 + +0.1
471,475 - +0.7
471,492 + -0.1
471,501 + +0.4
471,502 - -1.5
471,510 - +0.3
471,513 + -0.2
471,548 + Echvi_0427 0.30 -0.0

Or see this region's nucleotide sequence