Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_16380

Experiment: m.b. Tetracycline 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_16375 and CA264_16380 are separated by 164 nucleotidesCA264_16380 and CA264_16385 are separated by 66 nucleotides CA264_16375: CA264_16375 - hypothetical protein, at 3,811,158 to 3,812,120 _16375 CA264_16380: CA264_16380 - uroporphyrinogen-III synthase, at 3,812,285 to 3,813,088 _16380 CA264_16385: CA264_16385 - DUF4271 domain-containing protein, at 3,813,155 to 3,814,198 _16385 Position (kb) 3812 3813 3814Strain fitness (log2 ratio) -1 0 1 2at 3811.369 kb on + strand, within CA264_16375at 3811.370 kb on - strand, within CA264_16375at 3811.573 kb on + strand, within CA264_16375at 3811.631 kb on - strand, within CA264_16375at 3811.673 kb on + strand, within CA264_16375at 3811.674 kb on - strand, within CA264_16375at 3811.675 kb on + strand, within CA264_16375at 3811.676 kb on - strand, within CA264_16375at 3811.795 kb on + strand, within CA264_16375at 3811.796 kb on - strand, within CA264_16375at 3811.836 kb on - strand, within CA264_16375at 3811.963 kb on + strand, within CA264_16375at 3811.965 kb on + strand, within CA264_16375at 3811.965 kb on + strand, within CA264_16375at 3811.965 kb on + strand, within CA264_16375at 3811.966 kb on - strand, within CA264_16375at 3811.966 kb on - strand, within CA264_16375at 3811.966 kb on - strand, within CA264_16375at 3812.100 kb on + strandat 3812.101 kb on - strandat 3812.166 kb on + strandat 3812.166 kb on + strandat 3812.166 kb on + strandat 3812.166 kb on + strandat 3812.166 kb on + strandat 3812.167 kb on - strandat 3812.180 kb on - strandat 3812.180 kb on - strandat 3812.181 kb on + strandat 3812.181 kb on + strandat 3812.185 kb on + strandat 3812.185 kb on + strandat 3812.186 kb on - strandat 3812.244 kb on + strandat 3812.245 kb on - strandat 3812.248 kb on - strandat 3813.178 kb on + strandat 3813.185 kb on - strandat 3813.266 kb on - strand, within CA264_16385at 3813.267 kb on + strand, within CA264_16385at 3813.267 kb on + strand, within CA264_16385at 3813.268 kb on - strand, within CA264_16385at 3813.413 kb on + strand, within CA264_16385at 3813.510 kb on - strand, within CA264_16385at 3813.583 kb on + strand, within CA264_16385at 3813.583 kb on + strand, within CA264_16385at 3813.760 kb on - strand, within CA264_16385at 3813.760 kb on - strand, within CA264_16385at 3813.785 kb on - strand, within CA264_16385at 3813.800 kb on + strand, within CA264_16385at 3813.800 kb on + strand, within CA264_16385at 3813.802 kb on + strand, within CA264_16385at 3813.802 kb on + strand, within CA264_16385at 3813.803 kb on - strand, within CA264_16385at 3813.803 kb on - strand, within CA264_16385at 3813.809 kb on - strand, within CA264_16385at 3813.827 kb on + strand, within CA264_16385at 3813.828 kb on - strand, within CA264_16385at 3813.831 kb on + strand, within CA264_16385at 3813.914 kb on + strand, within CA264_16385at 3813.995 kb on + strand, within CA264_16385at 3813.996 kb on - strand, within CA264_16385at 3814.008 kb on + strand, within CA264_16385

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.006 mg/ml
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3,811,369 + CA264_16375 0.22 -0.6
3,811,370 - CA264_16375 0.22 +0.1
3,811,573 + CA264_16375 0.43 +0.1
3,811,631 - CA264_16375 0.49 +0.1
3,811,673 + CA264_16375 0.53 -1.1
3,811,674 - CA264_16375 0.54 -0.6
3,811,675 + CA264_16375 0.54 -0.8
3,811,676 - CA264_16375 0.54 -0.6
3,811,795 + CA264_16375 0.66 -0.5
3,811,796 - CA264_16375 0.66 -1.4
3,811,836 - CA264_16375 0.70 -0.3
3,811,963 + CA264_16375 0.84 -0.4
3,811,965 + CA264_16375 0.84 -1.4
3,811,965 + CA264_16375 0.84 -1.3
3,811,965 + CA264_16375 0.84 -1.5
3,811,966 - CA264_16375 0.84 -0.9
3,811,966 - CA264_16375 0.84 -1.1
3,811,966 - CA264_16375 0.84 +0.0
3,812,100 + +1.4
3,812,101 - -0.2
3,812,166 + -0.6
3,812,166 + +0.7
3,812,166 + -0.5
3,812,166 + +0.5
3,812,166 + -0.0
3,812,167 - +0.5
3,812,180 - -0.2
3,812,180 - +1.2
3,812,181 + +0.2
3,812,181 + -0.2
3,812,185 + +0.9
3,812,185 + +0.1
3,812,186 - +1.1
3,812,244 + -0.4
3,812,245 - +1.6
3,812,248 - -0.4
3,813,178 + +2.0
3,813,185 - +1.4
3,813,266 - CA264_16385 0.11 +1.0
3,813,267 + CA264_16385 0.11 +0.2
3,813,267 + CA264_16385 0.11 +0.2
3,813,268 - CA264_16385 0.11 +0.5
3,813,413 + CA264_16385 0.25 +0.6
3,813,510 - CA264_16385 0.34 +0.4
3,813,583 + CA264_16385 0.41 +0.7
3,813,583 + CA264_16385 0.41 +0.7
3,813,760 - CA264_16385 0.58 +0.6
3,813,760 - CA264_16385 0.58 -0.0
3,813,785 - CA264_16385 0.60 +0.6
3,813,800 + CA264_16385 0.62 -0.1
3,813,800 + CA264_16385 0.62 +0.5
3,813,802 + CA264_16385 0.62 +0.6
3,813,802 + CA264_16385 0.62 +1.0
3,813,803 - CA264_16385 0.62 +1.1
3,813,803 - CA264_16385 0.62 +0.5
3,813,809 - CA264_16385 0.63 +0.4
3,813,827 + CA264_16385 0.64 +0.4
3,813,828 - CA264_16385 0.64 +0.7
3,813,831 + CA264_16385 0.65 +0.6
3,813,914 + CA264_16385 0.73 -0.6
3,813,995 + CA264_16385 0.80 -0.4
3,813,996 - CA264_16385 0.81 +0.7
3,814,008 + CA264_16385 0.82 +0.6

Or see this region's nucleotide sequence