Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_14530

Experiment: m.b. Tetracycline 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_14520 and CA264_14525 are separated by 29 nucleotidesCA264_14525 and CA264_14530 overlap by 4 nucleotidesCA264_14530 and CA264_14535 are separated by 8 nucleotides CA264_14520: CA264_14520 - twin-arginine translocase TatA/TatE family subunit, at 3,407,810 to 3,408,022 _14520 CA264_14525: CA264_14525 - twin-arginine translocase TatA/TatE family subunit, at 3,408,052 to 3,408,270 _14525 CA264_14530: CA264_14530 - aspartyl/glutamyl-tRNA amidotransferase subunit A, at 3,408,267 to 3,409,703 _14530 CA264_14535: CA264_14535 - lytic transglycosylase, at 3,409,712 to 3,411,232 _14535 Position (kb) 3408 3409 3410Strain fitness (log2 ratio) -1 0 1at 3407.288 kb on + strandat 3407.289 kb on - strandat 3407.293 kb on - strandat 3407.293 kb on - strandat 3407.295 kb on - strandat 3407.298 kb on + strandat 3407.298 kb on + strandat 3407.299 kb on - strandat 3407.299 kb on - strandat 3407.299 kb on - strandat 3407.299 kb on - strandat 3407.299 kb on - strandat 3407.299 kb on - strandat 3407.299 kb on - strandat 3407.300 kb on + strandat 3407.300 kb on + strandat 3407.300 kb on + strandat 3407.301 kb on - strandat 3407.326 kb on - strandat 3407.326 kb on - strandat 3407.347 kb on + strandat 3407.368 kb on - strandat 3407.390 kb on + strandat 3407.390 kb on + strandat 3407.656 kb on + strandat 3407.669 kb on + strandat 3407.669 kb on + strandat 3407.670 kb on - strandat 3407.672 kb on - strandat 3407.672 kb on - strandat 3407.686 kb on + strandat 3407.740 kb on - strandat 3408.051 kb on + strandat 3408.055 kb on + strandat 3409.718 kb on + strandat 3409.732 kb on + strandat 3409.924 kb on - strand, within CA264_14535at 3409.963 kb on + strand, within CA264_14535at 3409.964 kb on - strand, within CA264_14535at 3409.964 kb on - strand, within CA264_14535at 3410.008 kb on - strand, within CA264_14535at 3410.049 kb on - strand, within CA264_14535at 3410.102 kb on + strand, within CA264_14535at 3410.133 kb on + strand, within CA264_14535at 3410.138 kb on + strand, within CA264_14535at 3410.139 kb on - strand, within CA264_14535at 3410.255 kb on + strand, within CA264_14535at 3410.327 kb on + strand, within CA264_14535at 3410.327 kb on + strand, within CA264_14535at 3410.328 kb on - strand, within CA264_14535at 3410.328 kb on - strand, within CA264_14535at 3410.328 kb on - strand, within CA264_14535at 3410.330 kb on + strand, within CA264_14535at 3410.330 kb on + strand, within CA264_14535at 3410.330 kb on + strand, within CA264_14535at 3410.362 kb on + strand, within CA264_14535at 3410.363 kb on - strand, within CA264_14535at 3410.465 kb on + strand, within CA264_14535at 3410.492 kb on + strand, within CA264_14535at 3410.492 kb on + strand, within CA264_14535at 3410.504 kb on + strand, within CA264_14535at 3410.504 kb on + strand, within CA264_14535at 3410.504 kb on + strand, within CA264_14535at 3410.505 kb on - strand, within CA264_14535at 3410.561 kb on + strand, within CA264_14535at 3410.561 kb on + strand, within CA264_14535at 3410.571 kb on + strand, within CA264_14535at 3410.571 kb on + strand, within CA264_14535at 3410.572 kb on - strand, within CA264_14535at 3410.688 kb on - strand, within CA264_14535at 3410.688 kb on - strand, within CA264_14535at 3410.690 kb on - strand, within CA264_14535

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.006 mg/ml
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3,407,288 + -0.4
3,407,289 - -0.1
3,407,293 - -0.1
3,407,293 - +0.6
3,407,295 - -0.3
3,407,298 + -0.1
3,407,298 + -0.0
3,407,299 - -0.1
3,407,299 - +0.1
3,407,299 - +0.5
3,407,299 - +0.0
3,407,299 - +0.6
3,407,299 - +0.7
3,407,299 - +1.0
3,407,300 + -0.4
3,407,300 + -0.2
3,407,300 + -0.3
3,407,301 - -0.3
3,407,326 - -0.3
3,407,326 - +0.3
3,407,347 + +0.1
3,407,368 - -0.3
3,407,390 + +0.2
3,407,390 + +0.7
3,407,656 + +0.4
3,407,669 + +0.6
3,407,669 + -0.9
3,407,670 - -1.2
3,407,672 - -0.0
3,407,672 - -0.5
3,407,686 + +0.7
3,407,740 - +1.6
3,408,051 + -0.0
3,408,055 + +0.9
3,409,718 + +0.1
3,409,732 + +0.3
3,409,924 - CA264_14535 0.14 +1.2
3,409,963 + CA264_14535 0.17 -0.3
3,409,964 - CA264_14535 0.17 -1.2
3,409,964 - CA264_14535 0.17 -1.1
3,410,008 - CA264_14535 0.19 -0.0
3,410,049 - CA264_14535 0.22 -1.2
3,410,102 + CA264_14535 0.26 -0.1
3,410,133 + CA264_14535 0.28 -0.8
3,410,138 + CA264_14535 0.28 -0.5
3,410,139 - CA264_14535 0.28 -0.9
3,410,255 + CA264_14535 0.36 +0.5
3,410,327 + CA264_14535 0.40 -0.2
3,410,327 + CA264_14535 0.40 +1.0
3,410,328 - CA264_14535 0.40 +1.2
3,410,328 - CA264_14535 0.40 -1.1
3,410,328 - CA264_14535 0.40 +0.5
3,410,330 + CA264_14535 0.41 -0.7
3,410,330 + CA264_14535 0.41 +0.3
3,410,330 + CA264_14535 0.41 -0.7
3,410,362 + CA264_14535 0.43 +0.4
3,410,363 - CA264_14535 0.43 +0.2
3,410,465 + CA264_14535 0.50 -0.3
3,410,492 + CA264_14535 0.51 -0.0
3,410,492 + CA264_14535 0.51 -1.7
3,410,504 + CA264_14535 0.52 -1.1
3,410,504 + CA264_14535 0.52 -0.7
3,410,504 + CA264_14535 0.52 -0.1
3,410,505 - CA264_14535 0.52 -1.2
3,410,561 + CA264_14535 0.56 -0.8
3,410,561 + CA264_14535 0.56 +0.3
3,410,571 + CA264_14535 0.56 +0.5
3,410,571 + CA264_14535 0.56 -0.0
3,410,572 - CA264_14535 0.57 +0.1
3,410,688 - CA264_14535 0.64 -0.1
3,410,688 - CA264_14535 0.64 -0.6
3,410,690 - CA264_14535 0.64 +0.2

Or see this region's nucleotide sequence