Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_13365

Experiment: m.b. Tetracycline 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_13360 and CA264_13365 are separated by 191 nucleotidesCA264_13365 and CA264_13370 are separated by 3 nucleotidesCA264_13370 and CA264_13375 are separated by 307 nucleotides CA264_13360: CA264_13360 - ABC transporter ATP-binding protein, at 3,116,002 to 3,116,913 _13360 CA264_13365: CA264_13365 - molecular chaperone DnaJ, at 3,117,105 to 3,118,256 _13365 CA264_13370: CA264_13370 - nucleotide exchange factor GrpE, at 3,118,260 to 3,118,826 _13370 CA264_13375: CA264_13375 - GTPase Obg, at 3,119,134 to 3,120,126 _13375 Position (kb) 3117 3118 3119Strain fitness (log2 ratio) -1 0 1 2 3at 3116.234 kb on + strand, within CA264_13360at 3116.249 kb on + strand, within CA264_13360at 3116.260 kb on + strand, within CA264_13360at 3116.261 kb on - strand, within CA264_13360at 3116.290 kb on - strand, within CA264_13360at 3116.290 kb on - strand, within CA264_13360at 3116.316 kb on + strand, within CA264_13360at 3116.362 kb on - strand, within CA264_13360at 3116.566 kb on + strand, within CA264_13360at 3116.660 kb on + strand, within CA264_13360at 3116.661 kb on - strand, within CA264_13360at 3116.917 kb on + strandat 3116.917 kb on + strandat 3116.940 kb on + strandat 3116.940 kb on + strandat 3116.941 kb on - strandat 3116.942 kb on + strandat 3116.944 kb on + strandat 3116.944 kb on + strandat 3116.945 kb on - strandat 3116.959 kb on - strandat 3116.959 kb on - strandat 3116.978 kb on - strandat 3116.989 kb on + strandat 3117.063 kb on + strandat 3117.086 kb on - strandat 3117.087 kb on + strandat 3117.425 kb on - strand, within CA264_13365at 3117.425 kb on - strand, within CA264_13365at 3118.261 kb on + strandat 3118.270 kb on - strandat 3118.826 kb on + strandat 3118.827 kb on - strandat 3118.858 kb on - strandat 3119.020 kb on - strandat 3119.078 kb on - strandat 3119.114 kb on + strandat 3119.114 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.006 mg/ml
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3,116,234 + CA264_13360 0.25 +0.1
3,116,249 + CA264_13360 0.27 -1.3
3,116,260 + CA264_13360 0.28 -0.7
3,116,261 - CA264_13360 0.28 +0.1
3,116,290 - CA264_13360 0.32 -0.7
3,116,290 - CA264_13360 0.32 +0.2
3,116,316 + CA264_13360 0.34 -0.3
3,116,362 - CA264_13360 0.39 -0.8
3,116,566 + CA264_13360 0.62 -0.6
3,116,660 + CA264_13360 0.72 -0.4
3,116,661 - CA264_13360 0.72 -0.5
3,116,917 + -0.4
3,116,917 + -1.6
3,116,940 + -0.4
3,116,940 + -0.3
3,116,941 - +0.2
3,116,942 + -0.6
3,116,944 + +1.1
3,116,944 + +0.1
3,116,945 - +0.6
3,116,959 - -0.3
3,116,959 - -0.2
3,116,978 - -0.5
3,116,989 + -0.9
3,117,063 + -0.5
3,117,086 - +0.1
3,117,087 + -1.0
3,117,425 - CA264_13365 0.28 +3.0
3,117,425 - CA264_13365 0.28 +0.4
3,118,261 + -0.2
3,118,270 - -1.2
3,118,826 + -0.0
3,118,827 - -0.3
3,118,858 - -0.7
3,119,020 - -0.2
3,119,078 - +0.8
3,119,114 + +0.1
3,119,114 + -0.0

Or see this region's nucleotide sequence