Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_04505

Experiment: m.b. Tetracycline 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_04500 and CA264_04505 are separated by 62 nucleotidesCA264_04505 and CA264_04510 are separated by 79 nucleotides CA264_04500: CA264_04500 - bacitracin ABC transporter ATP-binding protein, at 1,039,020 to 1,039,955 _04500 CA264_04505: CA264_04505 - ABC transporter permease, at 1,040,018 to 1,040,797 _04505 CA264_04510: CA264_04510 - DNA ligase (NAD(+)) LigA, at 1,040,877 to 1,042,886 _04510 Position (kb) 1040 1041Strain fitness (log2 ratio) -1 0 1 2at 1039.029 kb on + strandat 1039.029 kb on + strandat 1039.030 kb on - strandat 1039.030 kb on - strandat 1039.115 kb on + strand, within CA264_04500at 1039.115 kb on + strand, within CA264_04500at 1039.155 kb on - strand, within CA264_04500at 1039.167 kb on - strand, within CA264_04500at 1039.379 kb on - strand, within CA264_04500at 1039.412 kb on - strand, within CA264_04500at 1039.680 kb on + strand, within CA264_04500at 1039.834 kb on + strand, within CA264_04500at 1039.835 kb on - strand, within CA264_04500at 1039.870 kb on - strandat 1039.914 kb on - strandat 1039.979 kb on + strandat 1039.983 kb on + strandat 1039.983 kb on + strandat 1040.017 kb on + strandat 1040.018 kb on - strandat 1040.018 kb on - strandat 1040.028 kb on + strandat 1040.033 kb on + strandat 1040.033 kb on + strandat 1040.033 kb on + strandat 1040.034 kb on - strandat 1040.125 kb on + strand, within CA264_04505at 1040.126 kb on - strand, within CA264_04505at 1040.129 kb on + strand, within CA264_04505at 1040.129 kb on + strand, within CA264_04505at 1040.129 kb on + strand, within CA264_04505at 1040.130 kb on - strand, within CA264_04505at 1040.130 kb on - strand, within CA264_04505at 1040.220 kb on - strand, within CA264_04505at 1040.240 kb on - strand, within CA264_04505at 1040.246 kb on - strand, within CA264_04505at 1040.246 kb on - strand, within CA264_04505at 1040.246 kb on - strand, within CA264_04505at 1040.257 kb on - strand, within CA264_04505at 1040.310 kb on - strand, within CA264_04505at 1040.339 kb on + strand, within CA264_04505at 1040.340 kb on - strand, within CA264_04505at 1040.340 kb on - strand, within CA264_04505at 1040.406 kb on - strand, within CA264_04505at 1040.488 kb on + strand, within CA264_04505at 1040.497 kb on + strand, within CA264_04505at 1040.498 kb on - strand, within CA264_04505at 1040.524 kb on + strand, within CA264_04505at 1040.548 kb on + strand, within CA264_04505at 1040.571 kb on + strand, within CA264_04505at 1040.572 kb on - strand, within CA264_04505at 1040.575 kb on + strand, within CA264_04505at 1040.603 kb on - strand, within CA264_04505at 1040.639 kb on + strand, within CA264_04505at 1040.639 kb on + strand, within CA264_04505at 1040.640 kb on - strand, within CA264_04505at 1040.640 kb on - strand, within CA264_04505at 1040.640 kb on - strand, within CA264_04505at 1040.756 kb on - strandat 1040.756 kb on - strandat 1040.758 kb on - strandat 1040.758 kb on - strandat 1040.820 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.006 mg/ml
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1,039,029 + +1.4
1,039,029 + -0.4
1,039,030 - -0.3
1,039,030 - -1.6
1,039,115 + CA264_04500 0.10 +1.0
1,039,115 + CA264_04500 0.10 +0.1
1,039,155 - CA264_04500 0.14 -0.0
1,039,167 - CA264_04500 0.16 +0.0
1,039,379 - CA264_04500 0.38 +1.8
1,039,412 - CA264_04500 0.42 +0.6
1,039,680 + CA264_04500 0.71 +0.3
1,039,834 + CA264_04500 0.87 +0.7
1,039,835 - CA264_04500 0.87 -0.4
1,039,870 - +0.2
1,039,914 - -1.0
1,039,979 + -0.2
1,039,983 + -0.6
1,039,983 + +0.4
1,040,017 + +1.4
1,040,018 - +0.2
1,040,018 - -0.6
1,040,028 + -0.1
1,040,033 + -0.3
1,040,033 + +0.0
1,040,033 + -1.6
1,040,034 - -0.4
1,040,125 + CA264_04505 0.14 -1.0
1,040,126 - CA264_04505 0.14 -0.2
1,040,129 + CA264_04505 0.14 +0.9
1,040,129 + CA264_04505 0.14 -0.1
1,040,129 + CA264_04505 0.14 -0.4
1,040,130 - CA264_04505 0.14 +0.2
1,040,130 - CA264_04505 0.14 -0.7
1,040,220 - CA264_04505 0.26 -0.2
1,040,240 - CA264_04505 0.28 -0.5
1,040,246 - CA264_04505 0.29 -0.4
1,040,246 - CA264_04505 0.29 -0.6
1,040,246 - CA264_04505 0.29 -0.1
1,040,257 - CA264_04505 0.31 +0.2
1,040,310 - CA264_04505 0.37 +0.7
1,040,339 + CA264_04505 0.41 -1.5
1,040,340 - CA264_04505 0.41 +0.8
1,040,340 - CA264_04505 0.41 +0.0
1,040,406 - CA264_04505 0.50 +0.0
1,040,488 + CA264_04505 0.60 -1.7
1,040,497 + CA264_04505 0.61 +0.6
1,040,498 - CA264_04505 0.62 +0.4
1,040,524 + CA264_04505 0.65 +0.5
1,040,548 + CA264_04505 0.68 -1.0
1,040,571 + CA264_04505 0.71 +0.1
1,040,572 - CA264_04505 0.71 +0.3
1,040,575 + CA264_04505 0.71 -0.0
1,040,603 - CA264_04505 0.75 -0.6
1,040,639 + CA264_04505 0.80 -1.7
1,040,639 + CA264_04505 0.80 -0.7
1,040,640 - CA264_04505 0.80 -0.1
1,040,640 - CA264_04505 0.80 -0.2
1,040,640 - CA264_04505 0.80 +0.3
1,040,756 - -0.4
1,040,756 - +0.6
1,040,758 - -0.6
1,040,758 - +0.3
1,040,820 - -0.6

Or see this region's nucleotide sequence