Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_03580

Experiment: m.b. Tetracycline 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_03575 and CA264_03580 are separated by 100 nucleotidesCA264_03580 and CA264_03585 are separated by 421 nucleotidesCA264_03585 and CA264_03590 are separated by 184 nucleotides CA264_03575: CA264_03575 - hypothetical protein, at 831,841 to 832,755 _03575 CA264_03580: CA264_03580 - ATP-dependent helicase HrpB, at 832,856 to 835,303 _03580 CA264_03585: CA264_03585 - hypothetical protein, at 835,725 to 836,015 _03585 CA264_03590: CA264_03590 - hypothetical protein, at 836,200 to 836,601 _03590 Position (kb) 832 833 834 835 836Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 831.867 kb on + strandat 831.869 kb on + strandat 831.869 kb on + strandat 831.869 kb on + strandat 831.927 kb on + strandat 832.006 kb on + strand, within CA264_03575at 832.007 kb on - strand, within CA264_03575at 832.007 kb on - strand, within CA264_03575at 832.007 kb on - strand, within CA264_03575at 832.008 kb on + strand, within CA264_03575at 832.009 kb on - strand, within CA264_03575at 832.009 kb on - strand, within CA264_03575at 832.010 kb on + strand, within CA264_03575at 832.047 kb on + strand, within CA264_03575at 832.048 kb on - strand, within CA264_03575at 832.064 kb on - strand, within CA264_03575at 832.064 kb on - strand, within CA264_03575at 832.065 kb on + strand, within CA264_03575at 832.066 kb on - strand, within CA264_03575at 832.212 kb on - strand, within CA264_03575at 832.228 kb on - strand, within CA264_03575at 832.241 kb on + strand, within CA264_03575at 832.244 kb on + strand, within CA264_03575at 832.263 kb on - strand, within CA264_03575at 832.266 kb on + strand, within CA264_03575at 832.267 kb on - strand, within CA264_03575at 832.292 kb on + strand, within CA264_03575at 832.292 kb on + strand, within CA264_03575at 832.293 kb on - strand, within CA264_03575at 832.293 kb on - strand, within CA264_03575at 832.293 kb on - strand, within CA264_03575at 832.293 kb on - strand, within CA264_03575at 832.301 kb on + strand, within CA264_03575at 832.301 kb on + strand, within CA264_03575at 832.301 kb on + strand, within CA264_03575at 832.301 kb on + strand, within CA264_03575at 832.301 kb on + strand, within CA264_03575at 832.301 kb on + strand, within CA264_03575at 832.302 kb on - strand, within CA264_03575at 832.302 kb on - strand, within CA264_03575at 832.305 kb on + strand, within CA264_03575at 832.305 kb on + strand, within CA264_03575at 832.306 kb on - strand, within CA264_03575at 832.365 kb on - strand, within CA264_03575at 832.460 kb on - strand, within CA264_03575at 832.460 kb on - strand, within CA264_03575at 832.485 kb on + strand, within CA264_03575at 832.503 kb on + strand, within CA264_03575at 832.539 kb on + strand, within CA264_03575at 832.539 kb on + strand, within CA264_03575at 832.539 kb on + strand, within CA264_03575at 832.582 kb on - strand, within CA264_03575at 832.594 kb on - strand, within CA264_03575at 832.653 kb on - strand, within CA264_03575at 832.661 kb on - strand, within CA264_03575at 832.661 kb on - strand, within CA264_03575at 832.762 kb on - strandat 832.762 kb on - strandat 832.784 kb on + strandat 832.785 kb on - strandat 832.787 kb on + strandat 832.793 kb on - strandat 832.801 kb on + strandat 832.802 kb on - strandat 832.805 kb on + strandat 832.805 kb on + strandat 832.805 kb on + strandat 832.836 kb on - strandat 832.842 kb on + strandat 832.845 kb on - strandat 832.849 kb on + strandat 832.849 kb on + strandat 832.873 kb on + strandat 832.902 kb on + strandat 832.903 kb on - strandat 832.936 kb on + strandat 832.936 kb on + strandat 832.936 kb on + strandat 832.937 kb on - strandat 832.947 kb on + strandat 832.970 kb on - strandat 833.277 kb on + strand, within CA264_03580at 833.278 kb on - strand, within CA264_03580at 833.333 kb on - strand, within CA264_03580at 833.347 kb on + strand, within CA264_03580at 833.401 kb on + strand, within CA264_03580at 833.402 kb on - strand, within CA264_03580at 833.402 kb on - strand, within CA264_03580at 833.432 kb on + strand, within CA264_03580at 833.432 kb on + strand, within CA264_03580at 833.485 kb on - strand, within CA264_03580at 833.644 kb on + strand, within CA264_03580at 833.689 kb on + strand, within CA264_03580at 833.690 kb on - strand, within CA264_03580at 833.690 kb on - strand, within CA264_03580at 833.712 kb on + strand, within CA264_03580at 833.713 kb on - strand, within CA264_03580at 833.720 kb on - strand, within CA264_03580at 833.915 kb on - strand, within CA264_03580at 833.995 kb on + strand, within CA264_03580at 834.033 kb on - strand, within CA264_03580at 834.174 kb on + strand, within CA264_03580at 834.242 kb on - strand, within CA264_03580at 834.242 kb on - strand, within CA264_03580at 834.309 kb on + strand, within CA264_03580at 834.318 kb on + strand, within CA264_03580at 834.319 kb on - strand, within CA264_03580at 834.348 kb on + strand, within CA264_03580at 834.349 kb on - strand, within CA264_03580at 834.349 kb on - strand, within CA264_03580at 834.378 kb on - strand, within CA264_03580at 834.391 kb on - strand, within CA264_03580at 834.391 kb on - strand, within CA264_03580at 834.426 kb on - strand, within CA264_03580at 834.443 kb on - strand, within CA264_03580at 834.473 kb on + strand, within CA264_03580at 834.613 kb on - strand, within CA264_03580at 834.738 kb on + strand, within CA264_03580at 834.739 kb on - strand, within CA264_03580at 834.760 kb on + strand, within CA264_03580at 834.836 kb on - strand, within CA264_03580at 835.034 kb on - strand, within CA264_03580at 835.034 kb on - strand, within CA264_03580at 835.058 kb on - strand, within CA264_03580at 835.058 kb on - strand, within CA264_03580at 835.060 kb on - strandat 835.070 kb on + strandat 835.147 kb on - strandat 835.168 kb on - strandat 835.301 kb on + strandat 835.301 kb on + strandat 835.301 kb on + strandat 835.301 kb on + strandat 835.302 kb on - strandat 835.368 kb on - strandat 835.375 kb on + strandat 835.375 kb on + strandat 835.375 kb on + strandat 835.376 kb on - strandat 835.376 kb on - strandat 835.376 kb on - strandat 835.376 kb on - strandat 835.387 kb on - strandat 835.387 kb on - strandat 835.393 kb on - strandat 835.427 kb on - strandat 835.448 kb on - strandat 835.535 kb on - strandat 835.535 kb on - strandat 835.559 kb on - strandat 835.690 kb on - strandat 835.781 kb on - strand, within CA264_03585at 835.820 kb on + strand, within CA264_03585at 835.916 kb on + strand, within CA264_03585at 835.916 kb on + strand, within CA264_03585at 835.917 kb on - strand, within CA264_03585at 835.917 kb on - strand, within CA264_03585at 836.007 kb on - strandat 836.096 kb on + strandat 836.097 kb on - strandat 836.098 kb on + strandat 836.103 kb on - strandat 836.121 kb on + strandat 836.125 kb on + strandat 836.125 kb on + strandat 836.126 kb on - strandat 836.130 kb on + strandat 836.131 kb on - strandat 836.163 kb on - strandat 836.163 kb on - strandat 836.163 kb on - strandat 836.201 kb on + strandat 836.202 kb on - strandat 836.202 kb on - strandat 836.206 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.006 mg/ml
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831,867 + -0.0
831,869 + -0.3
831,869 + +0.5
831,869 + -0.7
831,927 + -0.2
832,006 + CA264_03575 0.18 -0.3
832,007 - CA264_03575 0.18 +0.0
832,007 - CA264_03575 0.18 -0.2
832,007 - CA264_03575 0.18 -1.1
832,008 + CA264_03575 0.18 +0.6
832,009 - CA264_03575 0.18 -1.0
832,009 - CA264_03575 0.18 +0.1
832,010 + CA264_03575 0.18 -0.1
832,047 + CA264_03575 0.23 -0.4
832,048 - CA264_03575 0.23 +0.0
832,064 - CA264_03575 0.24 +2.4
832,064 - CA264_03575 0.24 -0.2
832,065 + CA264_03575 0.24 -0.3
832,066 - CA264_03575 0.25 -0.7
832,212 - CA264_03575 0.41 -0.4
832,228 - CA264_03575 0.42 -0.7
832,241 + CA264_03575 0.44 -0.3
832,244 + CA264_03575 0.44 -1.2
832,263 - CA264_03575 0.46 -1.2
832,266 + CA264_03575 0.46 +0.2
832,267 - CA264_03575 0.47 -0.3
832,292 + CA264_03575 0.49 -0.4
832,292 + CA264_03575 0.49 +0.2
832,293 - CA264_03575 0.49 +0.8
832,293 - CA264_03575 0.49 -0.6
832,293 - CA264_03575 0.49 -0.2
832,293 - CA264_03575 0.49 +0.2
832,301 + CA264_03575 0.50 -1.1
832,301 + CA264_03575 0.50 -0.2
832,301 + CA264_03575 0.50 -0.4
832,301 + CA264_03575 0.50 -0.5
832,301 + CA264_03575 0.50 +0.4
832,301 + CA264_03575 0.50 +0.6
832,302 - CA264_03575 0.50 -0.3
832,302 - CA264_03575 0.50 +0.1
832,305 + CA264_03575 0.51 +0.6
832,305 + CA264_03575 0.51 +0.5
832,306 - CA264_03575 0.51 +1.3
832,365 - CA264_03575 0.57 -0.5
832,460 - CA264_03575 0.68 -0.0
832,460 - CA264_03575 0.68 +0.7
832,485 + CA264_03575 0.70 +0.7
832,503 + CA264_03575 0.72 +0.2
832,539 + CA264_03575 0.76 -0.4
832,539 + CA264_03575 0.76 +0.1
832,539 + CA264_03575 0.76 -0.5
832,582 - CA264_03575 0.81 -0.5
832,594 - CA264_03575 0.82 -0.2
832,653 - CA264_03575 0.89 +0.1
832,661 - CA264_03575 0.90 +0.0
832,661 - CA264_03575 0.90 -0.2
832,762 - -0.2
832,762 - +0.1
832,784 + -0.3
832,785 - -1.9
832,787 + +0.2
832,793 - -0.7
832,801 + +0.0
832,802 - +0.0
832,805 + -2.8
832,805 + -1.1
832,805 + +1.4
832,836 - -0.0
832,842 + -0.8
832,845 - +0.1
832,849 + -0.7
832,849 + -0.2
832,873 + +0.0
832,902 + +1.4
832,903 - -1.1
832,936 + -0.2
832,936 + +0.6
832,936 + -0.2
832,937 - -1.7
832,947 + +0.1
832,970 - -0.0
833,277 + CA264_03580 0.17 +2.1
833,278 - CA264_03580 0.17 -0.1
833,333 - CA264_03580 0.19 -0.7
833,347 + CA264_03580 0.20 +0.4
833,401 + CA264_03580 0.22 -0.8
833,402 - CA264_03580 0.22 +0.2
833,402 - CA264_03580 0.22 +1.2
833,432 + CA264_03580 0.24 +0.0
833,432 + CA264_03580 0.24 -0.3
833,485 - CA264_03580 0.26 -0.2
833,644 + CA264_03580 0.32 -0.2
833,689 + CA264_03580 0.34 -0.5
833,690 - CA264_03580 0.34 +0.1
833,690 - CA264_03580 0.34 +0.2
833,712 + CA264_03580 0.35 +0.2
833,713 - CA264_03580 0.35 -0.1
833,720 - CA264_03580 0.35 +0.3
833,915 - CA264_03580 0.43 -0.3
833,995 + CA264_03580 0.47 +0.6
834,033 - CA264_03580 0.48 -0.2
834,174 + CA264_03580 0.54 -1.2
834,242 - CA264_03580 0.57 +1.2
834,242 - CA264_03580 0.57 -0.0
834,309 + CA264_03580 0.59 -0.2
834,318 + CA264_03580 0.60 +0.3
834,319 - CA264_03580 0.60 +0.3
834,348 + CA264_03580 0.61 +0.2
834,349 - CA264_03580 0.61 +3.8
834,349 - CA264_03580 0.61 -0.3
834,378 - CA264_03580 0.62 -1.9
834,391 - CA264_03580 0.63 -0.8
834,391 - CA264_03580 0.63 +0.8
834,426 - CA264_03580 0.64 -0.6
834,443 - CA264_03580 0.65 -1.6
834,473 + CA264_03580 0.66 -0.0
834,613 - CA264_03580 0.72 +0.6
834,738 + CA264_03580 0.77 +0.8
834,739 - CA264_03580 0.77 -0.4
834,760 + CA264_03580 0.78 -0.9
834,836 - CA264_03580 0.81 +0.6
835,034 - CA264_03580 0.89 -1.0
835,034 - CA264_03580 0.89 -0.3
835,058 - CA264_03580 0.90 -1.2
835,058 - CA264_03580 0.90 +0.6
835,060 - +0.3
835,070 + +0.3
835,147 - +0.1
835,168 - +0.7
835,301 + -0.8
835,301 + -0.5
835,301 + -0.1
835,301 + -0.2
835,302 - -1.0
835,368 - -0.6
835,375 + +0.4
835,375 + -0.4
835,375 + +0.6
835,376 - +0.2
835,376 - -0.1
835,376 - -0.1
835,376 - -0.7
835,387 - -0.6
835,387 - +0.6
835,393 - -0.4
835,427 - -0.4
835,448 - +0.2
835,535 - +0.7
835,535 - -0.5
835,559 - -0.6
835,690 - -0.3
835,781 - CA264_03585 0.19 -0.4
835,820 + CA264_03585 0.33 -0.1
835,916 + CA264_03585 0.66 +0.1
835,916 + CA264_03585 0.66 +0.1
835,917 - CA264_03585 0.66 +0.3
835,917 - CA264_03585 0.66 -1.3
836,007 - -0.3
836,096 + +0.7
836,097 - +0.3
836,098 + -1.3
836,103 - +0.7
836,121 + -0.7
836,125 + +0.8
836,125 + -0.1
836,126 - +0.4
836,130 + +1.0
836,131 - -0.1
836,163 - -0.4
836,163 - -0.7
836,163 - -0.7
836,201 + -0.3
836,202 - +0.0
836,202 - -0.1
836,206 - -0.4

Or see this region's nucleotide sequence