Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_03315

Experiment: m.b. Tetracycline 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_03310 and CA264_03315 are separated by 292 nucleotidesCA264_03315 and CA264_03320 overlap by 4 nucleotides CA264_03310: CA264_03310 - peptidase M14, at 775,961 to 777,403 _03310 CA264_03315: CA264_03315 - hypothetical protein, at 777,696 to 778,994 _03315 CA264_03320: CA264_03320 - hypothetical protein, at 778,991 to 780,139 _03320 Position (kb) 777 778 779Strain fitness (log2 ratio) -2 -1 0 1 2 3at 776.700 kb on - strand, within CA264_03310at 776.756 kb on - strand, within CA264_03310at 776.853 kb on + strand, within CA264_03310at 776.895 kb on - strand, within CA264_03310at 776.903 kb on - strand, within CA264_03310at 777.023 kb on + strand, within CA264_03310at 777.023 kb on + strand, within CA264_03310at 777.024 kb on - strand, within CA264_03310at 777.024 kb on - strand, within CA264_03310at 777.025 kb on + strand, within CA264_03310at 777.026 kb on - strand, within CA264_03310at 777.031 kb on - strand, within CA264_03310at 777.031 kb on - strand, within CA264_03310at 777.031 kb on - strand, within CA264_03310at 777.031 kb on - strand, within CA264_03310at 777.196 kb on - strand, within CA264_03310at 777.199 kb on + strand, within CA264_03310at 777.323 kb on - strandat 777.324 kb on + strandat 777.418 kb on + strandat 777.424 kb on + strandat 777.452 kb on + strandat 777.452 kb on + strandat 777.472 kb on + strandat 777.473 kb on - strandat 777.473 kb on - strandat 777.473 kb on - strandat 777.476 kb on + strandat 777.476 kb on + strandat 777.476 kb on + strandat 777.477 kb on - strandat 777.477 kb on - strandat 777.477 kb on - strandat 777.478 kb on + strandat 777.524 kb on + strandat 777.525 kb on - strandat 777.535 kb on + strandat 777.536 kb on - strandat 777.608 kb on - strandat 777.625 kb on + strandat 777.625 kb on + strandat 777.695 kb on + strandat 777.831 kb on - strand, within CA264_03315at 777.858 kb on - strand, within CA264_03315at 777.882 kb on + strand, within CA264_03315at 777.942 kb on - strand, within CA264_03315at 777.955 kb on - strand, within CA264_03315at 777.975 kb on + strand, within CA264_03315at 778.065 kb on + strand, within CA264_03315at 778.065 kb on + strand, within CA264_03315at 778.066 kb on - strand, within CA264_03315at 778.066 kb on - strand, within CA264_03315at 778.066 kb on - strand, within CA264_03315at 778.067 kb on + strand, within CA264_03315at 778.067 kb on + strand, within CA264_03315at 778.067 kb on + strand, within CA264_03315at 778.067 kb on + strand, within CA264_03315at 778.067 kb on + strand, within CA264_03315at 778.067 kb on + strand, within CA264_03315at 778.068 kb on - strand, within CA264_03315at 778.068 kb on - strand, within CA264_03315at 778.111 kb on + strand, within CA264_03315at 778.270 kb on + strand, within CA264_03315at 778.271 kb on - strand, within CA264_03315at 778.271 kb on - strand, within CA264_03315at 778.271 kb on - strand, within CA264_03315at 778.271 kb on - strand, within CA264_03315at 778.271 kb on - strand, within CA264_03315at 778.271 kb on - strand, within CA264_03315at 778.271 kb on - strand, within CA264_03315at 778.334 kb on + strand, within CA264_03315at 778.342 kb on - strand, within CA264_03315at 778.363 kb on - strand, within CA264_03315at 778.419 kb on + strand, within CA264_03315at 778.419 kb on + strandat 778.435 kb on - strand, within CA264_03315at 778.438 kb on - strand, within CA264_03315at 778.489 kb on - strand, within CA264_03315at 778.565 kb on + strand, within CA264_03315at 778.570 kb on + strand, within CA264_03315at 778.571 kb on - strand, within CA264_03315at 778.602 kb on + strand, within CA264_03315at 778.602 kb on + strand, within CA264_03315at 778.602 kb on + strand, within CA264_03315at 778.603 kb on - strand, within CA264_03315at 778.603 kb on - strand, within CA264_03315at 778.638 kb on - strand, within CA264_03315at 778.641 kb on + strand, within CA264_03315at 778.642 kb on - strand, within CA264_03315at 778.642 kb on - strand, within CA264_03315at 778.668 kb on + strand, within CA264_03315at 778.669 kb on - strand, within CA264_03315at 778.750 kb on - strand, within CA264_03315at 778.806 kb on - strand, within CA264_03315at 778.824 kb on + strand, within CA264_03315at 778.824 kb on + strand, within CA264_03315at 778.944 kb on + strandat 778.945 kb on - strandat 778.972 kb on + strandat 778.973 kb on - strandat 778.992 kb on + strandat 778.993 kb on - strandat 779.269 kb on - strand, within CA264_03320at 779.416 kb on + strand, within CA264_03320at 779.512 kb on + strand, within CA264_03320at 779.540 kb on - strand, within CA264_03320at 779.540 kb on - strand, within CA264_03320at 779.715 kb on - strand, within CA264_03320at 779.860 kb on - strand, within CA264_03320

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.006 mg/ml
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776,700 - CA264_03310 0.51 -0.8
776,756 - CA264_03310 0.55 +1.2
776,853 + CA264_03310 0.62 -0.1
776,895 - CA264_03310 0.65 +0.3
776,903 - CA264_03310 0.65 -0.0
777,023 + CA264_03310 0.74 +0.7
777,023 + CA264_03310 0.74 -0.5
777,024 - CA264_03310 0.74 +0.5
777,024 - CA264_03310 0.74 +0.1
777,025 + CA264_03310 0.74 +0.6
777,026 - CA264_03310 0.74 -0.2
777,031 - CA264_03310 0.74 -0.2
777,031 - CA264_03310 0.74 -0.0
777,031 - CA264_03310 0.74 -0.0
777,031 - CA264_03310 0.74 -2.2
777,196 - CA264_03310 0.86 +0.1
777,199 + CA264_03310 0.86 -0.5
777,323 - +0.9
777,324 + +0.0
777,418 + -1.3
777,424 + +1.2
777,452 + -1.4
777,452 + +0.1
777,472 + +0.2
777,473 - -0.6
777,473 - +0.2
777,473 - -0.0
777,476 + -0.2
777,476 + +3.1
777,476 + -1.1
777,477 - -0.6
777,477 - +0.6
777,477 - -0.1
777,478 + -0.1
777,524 + +0.5
777,525 - -1.3
777,535 + -0.0
777,536 - -0.6
777,608 - -0.3
777,625 + -0.5
777,625 + -0.2
777,695 + -0.1
777,831 - CA264_03315 0.10 -0.7
777,858 - CA264_03315 0.12 -1.7
777,882 + CA264_03315 0.14 -0.2
777,942 - CA264_03315 0.19 -0.0
777,955 - CA264_03315 0.20 -0.4
777,975 + CA264_03315 0.21 -0.8
778,065 + CA264_03315 0.28 -1.0
778,065 + CA264_03315 0.28 -0.0
778,066 - CA264_03315 0.28 +0.8
778,066 - CA264_03315 0.28 -0.1
778,066 - CA264_03315 0.28 -0.4
778,067 + CA264_03315 0.29 -2.4
778,067 + CA264_03315 0.29 -0.2
778,067 + CA264_03315 0.29 +1.0
778,067 + CA264_03315 0.29 -0.6
778,067 + CA264_03315 0.29 +0.2
778,067 + CA264_03315 0.29 -0.8
778,068 - CA264_03315 0.29 +0.6
778,068 - CA264_03315 0.29 -0.4
778,111 + CA264_03315 0.32 -0.4
778,270 + CA264_03315 0.44 -0.1
778,271 - CA264_03315 0.44 -0.3
778,271 - CA264_03315 0.44 +0.3
778,271 - CA264_03315 0.44 +0.2
778,271 - CA264_03315 0.44 -0.9
778,271 - CA264_03315 0.44 -0.6
778,271 - CA264_03315 0.44 -0.4
778,271 - CA264_03315 0.44 -1.0
778,334 + CA264_03315 0.49 +0.2
778,342 - CA264_03315 0.50 +0.3
778,363 - CA264_03315 0.51 -0.4
778,419 + CA264_03315 0.56 -0.4
778,419 + -0.2
778,435 - CA264_03315 0.57 -0.1
778,438 - CA264_03315 0.57 -0.2
778,489 - CA264_03315 0.61 +0.9
778,565 + CA264_03315 0.67 -0.7
778,570 + CA264_03315 0.67 +0.4
778,571 - CA264_03315 0.67 -0.3
778,602 + CA264_03315 0.70 -0.2
778,602 + CA264_03315 0.70 -0.6
778,602 + CA264_03315 0.70 -0.9
778,603 - CA264_03315 0.70 -0.1
778,603 - CA264_03315 0.70 +0.7
778,638 - CA264_03315 0.73 +0.1
778,641 + CA264_03315 0.73 -1.6
778,642 - CA264_03315 0.73 +0.9
778,642 - CA264_03315 0.73 -0.6
778,668 + CA264_03315 0.75 -0.2
778,669 - CA264_03315 0.75 -0.3
778,750 - CA264_03315 0.81 -0.0
778,806 - CA264_03315 0.85 +0.2
778,824 + CA264_03315 0.87 +1.2
778,824 + CA264_03315 0.87 -0.2
778,944 + +0.4
778,945 - +1.1
778,972 + +0.2
778,973 - +0.3
778,992 + +1.0
778,993 - +0.2
779,269 - CA264_03320 0.24 -0.2
779,416 + CA264_03320 0.37 -0.7
779,512 + CA264_03320 0.45 +1.7
779,540 - CA264_03320 0.48 -0.3
779,540 - CA264_03320 0.48 +1.0
779,715 - CA264_03320 0.63 -0.2
779,860 - CA264_03320 0.76 -0.2

Or see this region's nucleotide sequence