Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_03185

Experiment: m.b. Tetracycline 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_03180 and CA264_03185 are separated by 18 nucleotidesCA264_03185 and CA264_03190 are separated by 117 nucleotidesCA264_03190 and CA264_03195 are separated by 268 nucleotides CA264_03180: CA264_03180 - efflux transporter periplasmic adaptor subunit, at 744,523 to 745,575 _03180 CA264_03185: CA264_03185 - hypothetical protein, at 745,594 to 746,904 _03185 CA264_03190: CA264_03190 - hypothetical protein, at 747,022 to 747,483 _03190 CA264_03195: CA264_03195 - alpha-glucan family phosphorylase, at 747,752 to 749,407 _03195 Position (kb) 745 746 747Strain fitness (log2 ratio) -2 -1 0 1at 744.683 kb on - strand, within CA264_03180at 744.773 kb on + strand, within CA264_03180at 744.774 kb on - strand, within CA264_03180at 745.026 kb on - strand, within CA264_03180at 745.264 kb on + strand, within CA264_03180at 745.264 kb on + strand, within CA264_03180at 745.303 kb on + strand, within CA264_03180at 745.382 kb on - strand, within CA264_03180at 745.383 kb on + strand, within CA264_03180at 745.383 kb on + strand, within CA264_03180at 745.384 kb on - strand, within CA264_03180at 745.389 kb on + strand, within CA264_03180at 745.389 kb on + strand, within CA264_03180at 745.402 kb on - strand, within CA264_03180at 745.428 kb on + strand, within CA264_03180at 745.428 kb on + strand, within CA264_03180at 745.519 kb on - strandat 745.520 kb on + strandat 745.527 kb on + strandat 745.559 kb on + strandat 745.560 kb on - strandat 745.595 kb on + strandat 745.596 kb on - strandat 745.600 kb on - strandat 745.604 kb on - strandat 745.634 kb on + strandat 745.655 kb on + strandat 745.655 kb on + strandat 745.656 kb on - strandat 745.660 kb on + strandat 745.749 kb on - strand, within CA264_03185at 745.814 kb on + strand, within CA264_03185at 745.969 kb on - strand, within CA264_03185at 746.005 kb on + strand, within CA264_03185at 746.006 kb on - strand, within CA264_03185at 746.089 kb on + strand, within CA264_03185at 746.097 kb on + strand, within CA264_03185at 746.101 kb on - strand, within CA264_03185at 746.141 kb on + strand, within CA264_03185at 746.175 kb on + strand, within CA264_03185at 746.180 kb on - strand, within CA264_03185at 746.193 kb on + strand, within CA264_03185at 746.262 kb on + strand, within CA264_03185at 746.262 kb on + strand, within CA264_03185at 746.263 kb on - strand, within CA264_03185at 746.285 kb on + strand, within CA264_03185at 746.285 kb on + strand, within CA264_03185at 746.286 kb on - strand, within CA264_03185at 746.286 kb on - strand, within CA264_03185at 746.295 kb on + strand, within CA264_03185at 746.295 kb on + strand, within CA264_03185at 746.295 kb on + strand, within CA264_03185at 746.305 kb on + strand, within CA264_03185at 746.347 kb on - strand, within CA264_03185at 746.468 kb on + strand, within CA264_03185at 746.471 kb on + strand, within CA264_03185at 746.490 kb on - strand, within CA264_03185at 746.588 kb on - strand, within CA264_03185at 746.708 kb on + strand, within CA264_03185at 746.708 kb on + strand, within CA264_03185at 746.708 kb on + strand, within CA264_03185at 746.708 kb on + strand, within CA264_03185at 746.709 kb on - strand, within CA264_03185at 746.713 kb on + strand, within CA264_03185at 746.792 kb on + strandat 746.793 kb on - strandat 746.950 kb on - strandat 746.952 kb on - strandat 747.380 kb on + strand, within CA264_03190at 747.380 kb on + strand, within CA264_03190at 747.380 kb on + strand, within CA264_03190at 747.380 kb on + strand, within CA264_03190at 747.393 kb on + strand, within CA264_03190at 747.484 kb on - strandat 747.490 kb on + strandat 747.490 kb on + strandat 747.491 kb on - strandat 747.491 kb on - strandat 747.507 kb on - strandat 747.575 kb on + strandat 747.652 kb on + strandat 747.652 kb on + strandat 747.662 kb on - strandat 747.672 kb on - strandat 747.682 kb on + strandat 747.682 kb on + strandat 747.682 kb on + strandat 747.682 kb on + strandat 747.682 kb on + strandat 747.682 kb on + strandat 747.683 kb on - strandat 747.683 kb on - strandat 747.752 kb on - strandat 747.752 kb on - strandat 747.765 kb on - strandat 747.785 kb on + strandat 747.785 kb on + strandat 747.786 kb on - strandat 747.804 kb on - strandat 747.805 kb on + strandat 747.864 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.006 mg/ml
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744,683 - CA264_03180 0.15 -1.5
744,773 + CA264_03180 0.24 -1.0
744,774 - CA264_03180 0.24 -0.7
745,026 - CA264_03180 0.48 -0.6
745,264 + CA264_03180 0.70 +0.0
745,264 + CA264_03180 0.70 -1.5
745,303 + CA264_03180 0.74 +0.4
745,382 - CA264_03180 0.82 -0.9
745,383 + CA264_03180 0.82 -1.3
745,383 + CA264_03180 0.82 -0.4
745,384 - CA264_03180 0.82 -1.6
745,389 + CA264_03180 0.82 -1.5
745,389 + CA264_03180 0.82 -0.7
745,402 - CA264_03180 0.83 +0.6
745,428 + CA264_03180 0.86 -2.3
745,428 + CA264_03180 0.86 -1.0
745,519 - -0.4
745,520 + +0.2
745,527 + -0.7
745,559 + -1.4
745,560 - -0.8
745,595 + -0.7
745,596 - -1.1
745,600 - -0.2
745,604 - -2.1
745,634 + -1.3
745,655 + -0.8
745,655 + -0.8
745,656 - -1.0
745,660 + -1.4
745,749 - CA264_03185 0.12 -2.5
745,814 + CA264_03185 0.17 -1.1
745,969 - CA264_03185 0.29 +0.3
746,005 + CA264_03185 0.31 -1.1
746,006 - CA264_03185 0.31 -1.7
746,089 + CA264_03185 0.38 -0.5
746,097 + CA264_03185 0.38 -0.5
746,101 - CA264_03185 0.39 -2.1
746,141 + CA264_03185 0.42 -2.3
746,175 + CA264_03185 0.44 -1.5
746,180 - CA264_03185 0.45 -2.0
746,193 + CA264_03185 0.46 +1.1
746,262 + CA264_03185 0.51 -1.0
746,262 + CA264_03185 0.51 -0.1
746,263 - CA264_03185 0.51 -1.6
746,285 + CA264_03185 0.53 -2.1
746,285 + CA264_03185 0.53 -1.2
746,286 - CA264_03185 0.53 -2.0
746,286 - CA264_03185 0.53 -1.5
746,295 + CA264_03185 0.53 -0.7
746,295 + CA264_03185 0.53 +1.0
746,295 + CA264_03185 0.53 -0.6
746,305 + CA264_03185 0.54 -0.8
746,347 - CA264_03185 0.57 -1.9
746,468 + CA264_03185 0.67 -0.3
746,471 + CA264_03185 0.67 -0.4
746,490 - CA264_03185 0.68 -1.4
746,588 - CA264_03185 0.76 +0.2
746,708 + CA264_03185 0.85 +0.8
746,708 + CA264_03185 0.85 -1.3
746,708 + CA264_03185 0.85 +0.2
746,708 + CA264_03185 0.85 -0.3
746,709 - CA264_03185 0.85 -1.3
746,713 + CA264_03185 0.85 -0.9
746,792 + -0.3
746,793 - -2.1
746,950 - -1.2
746,952 - -2.6
747,380 + CA264_03190 0.77 -0.5
747,380 + CA264_03190 0.77 +0.5
747,380 + CA264_03190 0.77 +0.4
747,380 + CA264_03190 0.77 +0.1
747,393 + CA264_03190 0.80 +0.6
747,484 - -0.0
747,490 + -0.1
747,490 + -0.1
747,491 - -0.2
747,491 - +0.8
747,507 - -0.1
747,575 + -0.9
747,652 + -1.0
747,652 + +0.3
747,662 - -0.4
747,672 - -0.0
747,682 + +0.1
747,682 + +0.3
747,682 + +1.4
747,682 + +0.5
747,682 + -0.2
747,682 + -0.1
747,683 - +0.2
747,683 - +0.4
747,752 - -0.2
747,752 - -0.6
747,765 - -0.2
747,785 + +0.1
747,785 + -0.2
747,786 - -0.3
747,804 - -0.2
747,805 + +1.0
747,864 - +0.4

Or see this region's nucleotide sequence