Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02125

Experiment: m.b. Tetracycline 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_02115 and CA264_02120 are separated by 78 nucleotidesCA264_02120 and CA264_02125 are separated by 186 nucleotidesCA264_02125 and CA264_02130 are separated by 255 nucleotidesCA264_02130 and CA264_02135 are separated by 24 nucleotides CA264_02115: CA264_02115 - threonylcarbamoyl-AMP synthase, at 489,008 to 489,634 _02115 CA264_02120: CA264_02120 - GNAT family N-acetyltransferase, at 489,713 to 490,270 _02120 CA264_02125: CA264_02125 - alpha/beta hydrolase, at 490,457 to 490,996 _02125 CA264_02130: CA264_02130 - pseudouridine synthase, at 491,252 to 491,926 _02130 CA264_02135: CA264_02135 - GNAT family N-acetyltransferase, at 491,951 to 492,520 _02135 Position (kb) 490 491Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 489.461 kb on + strand, within CA264_02115at 489.461 kb on + strand, within CA264_02115at 489.517 kb on - strand, within CA264_02115at 489.517 kb on - strand, within CA264_02115at 489.640 kb on + strandat 489.640 kb on + strandat 489.641 kb on - strandat 489.658 kb on + strandat 489.658 kb on + strandat 489.658 kb on + strandat 489.659 kb on - strandat 489.659 kb on - strandat 489.659 kb on - strandat 489.664 kb on - strandat 489.664 kb on - strandat 489.669 kb on + strandat 489.795 kb on - strand, within CA264_02120at 489.795 kb on - strand, within CA264_02120at 489.863 kb on + strand, within CA264_02120at 489.864 kb on - strand, within CA264_02120at 489.869 kb on + strand, within CA264_02120at 489.900 kb on + strand, within CA264_02120at 489.900 kb on + strand, within CA264_02120at 489.901 kb on - strand, within CA264_02120at 489.901 kb on - strand, within CA264_02120at 490.007 kb on - strand, within CA264_02120at 490.095 kb on + strand, within CA264_02120at 490.276 kb on + strandat 490.290 kb on - strandat 490.292 kb on + strandat 490.292 kb on + strandat 490.292 kb on + strandat 490.298 kb on + strandat 490.305 kb on + strandat 490.428 kb on + strandat 490.429 kb on - strandat 490.429 kb on - strandat 490.431 kb on - strandat 490.431 kb on - strandat 490.456 kb on + strandat 490.474 kb on + strandat 490.475 kb on - strandat 490.476 kb on + strandat 490.477 kb on - strandat 490.483 kb on - strandat 490.819 kb on + strand, within CA264_02125at 490.832 kb on - strand, within CA264_02125at 490.847 kb on + strand, within CA264_02125at 490.847 kb on + strand, within CA264_02125at 490.847 kb on + strand, within CA264_02125at 490.848 kb on - strand, within CA264_02125at 490.848 kb on - strand, within CA264_02125at 490.848 kb on - strand, within CA264_02125at 490.899 kb on - strand, within CA264_02125at 490.928 kb on - strand, within CA264_02125at 491.034 kb on - strandat 491.128 kb on + strandat 491.164 kb on + strandat 491.194 kb on + strandat 491.194 kb on + strandat 491.194 kb on + strandat 491.194 kb on + strandat 491.195 kb on - strandat 491.195 kb on - strandat 491.200 kb on + strandat 491.200 kb on + strandat 491.200 kb on + strandat 491.201 kb on - strandat 491.207 kb on + strandat 491.207 kb on + strandat 491.208 kb on - strandat 491.257 kb on + strandat 491.619 kb on - strand, within CA264_02130at 491.619 kb on - strand, within CA264_02130at 491.716 kb on - strand, within CA264_02130at 491.716 kb on - strand, within CA264_02130at 491.727 kb on - strand, within CA264_02130at 491.727 kb on - strand, within CA264_02130at 491.731 kb on + strand, within CA264_02130at 491.891 kb on + strandat 491.919 kb on + strandat 491.919 kb on + strandat 491.919 kb on + strandat 491.920 kb on - strandat 491.920 kb on - strandat 491.920 kb on - strandat 491.920 kb on - strandat 491.939 kb on - strandat 491.939 kb on - strandat 491.943 kb on - strandat 491.952 kb on + strandat 491.953 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.006 mg/ml
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489,461 + CA264_02115 0.72 -0.1
489,461 + CA264_02115 0.72 -1.0
489,517 - CA264_02115 0.81 -0.4
489,517 - CA264_02115 0.81 -0.9
489,640 + -0.6
489,640 + -1.7
489,641 - -0.8
489,658 + -0.9
489,658 + -1.3
489,658 + -0.6
489,659 - -0.6
489,659 - -2.8
489,659 - -1.7
489,664 - +1.8
489,664 - -0.5
489,669 + -1.1
489,795 - CA264_02120 0.15 -0.5
489,795 - CA264_02120 0.15 -0.1
489,863 + CA264_02120 0.27 -0.3
489,864 - CA264_02120 0.27 -0.9
489,869 + CA264_02120 0.28 +0.4
489,900 + CA264_02120 0.34 -0.3
489,900 + CA264_02120 0.34 -1.0
489,901 - CA264_02120 0.34 -0.6
489,901 - CA264_02120 0.34 -0.3
490,007 - CA264_02120 0.53 -1.0
490,095 + CA264_02120 0.68 -1.3
490,276 + -1.3
490,290 - -1.6
490,292 + -1.2
490,292 + -2.3
490,292 + -0.1
490,298 + -1.5
490,305 + -0.6
490,428 + -1.3
490,429 - +0.5
490,429 - -0.6
490,431 - -0.7
490,431 - -1.7
490,456 + -0.1
490,474 + +1.1
490,475 - -2.5
490,476 + -0.6
490,477 - -1.1
490,483 - -1.2
490,819 + CA264_02125 0.67 -1.1
490,832 - CA264_02125 0.69 -0.5
490,847 + CA264_02125 0.72 -1.1
490,847 + CA264_02125 0.72 -0.8
490,847 + CA264_02125 0.72 +0.5
490,848 - CA264_02125 0.72 -1.5
490,848 - CA264_02125 0.72 -1.4
490,848 - CA264_02125 0.72 -1.2
490,899 - CA264_02125 0.82 -0.7
490,928 - CA264_02125 0.87 +0.7
491,034 - -0.6
491,128 + -0.3
491,164 + -1.4
491,194 + -1.0
491,194 + -1.3
491,194 + -0.7
491,194 + -1.3
491,195 - -1.0
491,195 - -0.6
491,200 + -0.9
491,200 + -0.8
491,200 + -1.9
491,201 - -0.6
491,207 + -0.4
491,207 + -1.3
491,208 - -0.8
491,257 + +0.5
491,619 - CA264_02130 0.54 -1.2
491,619 - CA264_02130 0.54 -0.5
491,716 - CA264_02130 0.69 +0.8
491,716 - CA264_02130 0.69 +0.0
491,727 - CA264_02130 0.70 -0.7
491,727 - CA264_02130 0.70 -0.6
491,731 + CA264_02130 0.71 -0.1
491,891 + +1.6
491,919 + -0.7
491,919 + -0.2
491,919 + -0.6
491,920 - -1.1
491,920 - -0.7
491,920 - -0.1
491,920 - -1.0
491,939 - -0.9
491,939 - -1.1
491,943 - +0.5
491,952 + -1.9
491,953 - -1.1

Or see this region's nucleotide sequence