Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_00385

Experiment: m.b. Tetracycline 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_00375 and CA264_00380 are separated by 58 nucleotidesCA264_00380 and CA264_00385 are separated by 180 nucleotidesCA264_00385 and CA264_00390 are separated by 83 nucleotidesCA264_00390 and CA264_00395 overlap by 4 nucleotides CA264_00375: CA264_00375 - hypothetical protein, at 84,533 to 85,006 _00375 CA264_00380: CA264_00380 - hypothetical protein, at 85,065 to 85,520 _00380 CA264_00385: CA264_00385 - hypothetical protein, at 85,701 to 86,570 _00385 CA264_00390: CA264_00390 - N-acetyltransferase, at 86,654 to 87,136 _00390 CA264_00395: CA264_00395 - SAM-dependent methyltransferase, at 87,133 to 87,759 _00395 Position (kb) 85 86 87Strain fitness (log2 ratio) -2 -1 0 1 2at 84.720 kb on + strand, within CA264_00375at 84.721 kb on - strand, within CA264_00375at 84.750 kb on + strand, within CA264_00375at 84.751 kb on - strand, within CA264_00375at 84.751 kb on - strand, within CA264_00375at 84.752 kb on + strand, within CA264_00375at 84.752 kb on + strand, within CA264_00375at 84.752 kb on + strand, within CA264_00375at 84.753 kb on - strand, within CA264_00375at 84.753 kb on - strand, within CA264_00375at 84.773 kb on - strand, within CA264_00375at 84.778 kb on + strand, within CA264_00375at 84.784 kb on + strand, within CA264_00375at 84.785 kb on - strand, within CA264_00375at 84.806 kb on - strand, within CA264_00375at 84.856 kb on - strand, within CA264_00375at 84.861 kb on + strand, within CA264_00375at 84.861 kb on + strand, within CA264_00375at 84.861 kb on + strand, within CA264_00375at 84.861 kb on + strand, within CA264_00375at 84.862 kb on - strand, within CA264_00375at 84.865 kb on + strand, within CA264_00375at 84.866 kb on - strand, within CA264_00375at 84.896 kb on + strand, within CA264_00375at 84.896 kb on + strand, within CA264_00375at 84.896 kb on + strand, within CA264_00375at 84.932 kb on + strand, within CA264_00375at 84.932 kb on + strand, within CA264_00375at 84.933 kb on - strand, within CA264_00375at 84.949 kb on + strand, within CA264_00375at 84.949 kb on + strand, within CA264_00375at 84.952 kb on + strand, within CA264_00375at 85.004 kb on + strandat 85.005 kb on - strandat 85.005 kb on - strandat 85.105 kb on + strandat 85.107 kb on + strandat 85.108 kb on - strandat 85.128 kb on + strand, within CA264_00380at 85.129 kb on - strand, within CA264_00380at 85.129 kb on - strand, within CA264_00380at 85.135 kb on + strand, within CA264_00380at 85.189 kb on + strand, within CA264_00380at 85.189 kb on + strand, within CA264_00380at 85.189 kb on + strand, within CA264_00380at 85.189 kb on + strand, within CA264_00380at 85.189 kb on + strand, within CA264_00380at 85.190 kb on - strand, within CA264_00380at 85.190 kb on - strand, within CA264_00380at 85.190 kb on - strand, within CA264_00380at 85.224 kb on + strand, within CA264_00380at 85.249 kb on - strand, within CA264_00380at 85.275 kb on + strand, within CA264_00380at 85.275 kb on + strand, within CA264_00380at 85.304 kb on + strand, within CA264_00380at 85.374 kb on + strand, within CA264_00380at 85.375 kb on - strand, within CA264_00380at 85.394 kb on + strand, within CA264_00380at 85.428 kb on + strand, within CA264_00380at 85.433 kb on - strand, within CA264_00380at 85.453 kb on + strand, within CA264_00380at 85.460 kb on + strand, within CA264_00380at 85.576 kb on - strandat 85.678 kb on + strandat 85.741 kb on + strandat 85.742 kb on - strandat 85.742 kb on - strandat 85.765 kb on - strandat 85.766 kb on + strandat 85.766 kb on + strandat 85.767 kb on - strandat 85.782 kb on + strandat 85.867 kb on + strand, within CA264_00385at 85.905 kb on + strand, within CA264_00385at 85.905 kb on + strand, within CA264_00385at 85.905 kb on + strand, within CA264_00385at 85.905 kb on + strand, within CA264_00385at 86.093 kb on + strand, within CA264_00385at 86.093 kb on + strand, within CA264_00385at 86.267 kb on + strand, within CA264_00385at 86.267 kb on + strand, within CA264_00385at 86.267 kb on + strand, within CA264_00385at 86.268 kb on - strand, within CA264_00385at 86.300 kb on + strand, within CA264_00385at 86.301 kb on - strand, within CA264_00385at 86.304 kb on + strand, within CA264_00385at 86.346 kb on - strand, within CA264_00385at 86.350 kb on - strand, within CA264_00385at 86.350 kb on - strand, within CA264_00385at 86.366 kb on - strand, within CA264_00385at 86.486 kb on - strandat 86.486 kb on - strandat 86.633 kb on + strandat 86.648 kb on - strandat 86.653 kb on + strandat 86.653 kb on + strandat 86.653 kb on + strandat 86.653 kb on + strandat 86.654 kb on - strandat 86.734 kb on + strand, within CA264_00390at 86.760 kb on - strand, within CA264_00390at 86.786 kb on + strand, within CA264_00390at 86.844 kb on + strand, within CA264_00390at 86.847 kb on + strand, within CA264_00390at 86.847 kb on + strand, within CA264_00390at 86.848 kb on - strand, within CA264_00390at 86.913 kb on - strand, within CA264_00390at 86.968 kb on + strand, within CA264_00390at 86.994 kb on - strand, within CA264_00390at 87.006 kb on - strand, within CA264_00390at 87.009 kb on + strand, within CA264_00390at 87.040 kb on - strand, within CA264_00390at 87.043 kb on + strand, within CA264_00390at 87.043 kb on + strand, within CA264_00390at 87.043 kb on + strand, within CA264_00390at 87.043 kb on + strand, within CA264_00390at 87.043 kb on + strand, within CA264_00390at 87.043 kb on + strand, within CA264_00390at 87.043 kb on + strand, within CA264_00390at 87.043 kb on + strand, within CA264_00390at 87.043 kb on + strand, within CA264_00390at 87.043 kb on + strand, within CA264_00390at 87.043 kb on + strand, within CA264_00390at 87.044 kb on - strand, within CA264_00390at 87.044 kb on - strand, within CA264_00390at 87.044 kb on - strand, within CA264_00390at 87.044 kb on - strand, within CA264_00390at 87.132 kb on + strandat 87.132 kb on + strandat 87.133 kb on - strandat 87.139 kb on - strandat 87.326 kb on + strand, within CA264_00395at 87.326 kb on + strand, within CA264_00395at 87.326 kb on + strand, within CA264_00395at 87.326 kb on + strand, within CA264_00395at 87.436 kb on + strand, within CA264_00395at 87.437 kb on - strand, within CA264_00395at 87.453 kb on + strand, within CA264_00395at 87.489 kb on + strand, within CA264_00395at 87.490 kb on - strand, within CA264_00395at 87.534 kb on - strand, within CA264_00395at 87.535 kb on + strand, within CA264_00395at 87.536 kb on - strand, within CA264_00395at 87.565 kb on + strand, within CA264_00395at 87.566 kb on - strand, within CA264_00395at 87.566 kb on - strand, within CA264_00395

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.006 mg/ml
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84,720 + CA264_00375 0.39 -1.6
84,721 - CA264_00375 0.40 -1.3
84,750 + CA264_00375 0.46 -0.2
84,751 - CA264_00375 0.46 -0.7
84,751 - CA264_00375 0.46 -0.2
84,752 + CA264_00375 0.46 +0.6
84,752 + CA264_00375 0.46 +0.2
84,752 + CA264_00375 0.46 +0.1
84,753 - CA264_00375 0.46 -0.6
84,753 - CA264_00375 0.46 +1.4
84,773 - CA264_00375 0.51 +0.5
84,778 + CA264_00375 0.52 -0.1
84,784 + CA264_00375 0.53 -0.6
84,785 - CA264_00375 0.53 -0.6
84,806 - CA264_00375 0.58 -0.3
84,856 - CA264_00375 0.68 -0.0
84,861 + CA264_00375 0.69 -0.2
84,861 + CA264_00375 0.69 +0.3
84,861 + CA264_00375 0.69 +0.2
84,861 + CA264_00375 0.69 +1.6
84,862 - CA264_00375 0.69 -0.2
84,865 + CA264_00375 0.70 -0.4
84,866 - CA264_00375 0.70 +0.7
84,896 + CA264_00375 0.77 -0.3
84,896 + CA264_00375 0.77 -0.7
84,896 + CA264_00375 0.77 +0.1
84,932 + CA264_00375 0.84 -1.0
84,932 + CA264_00375 0.84 +0.1
84,933 - CA264_00375 0.84 -0.6
84,949 + CA264_00375 0.88 +0.6
84,949 + CA264_00375 0.88 +0.2
84,952 + CA264_00375 0.88 -0.1
85,004 + -1.2
85,005 - -0.8
85,005 - -0.4
85,105 + +0.4
85,107 + -0.3
85,108 - -2.1
85,128 + CA264_00380 0.14 -0.2
85,129 - CA264_00380 0.14 -1.2
85,129 - CA264_00380 0.14 +0.3
85,135 + CA264_00380 0.15 +0.2
85,189 + CA264_00380 0.27 -0.9
85,189 + CA264_00380 0.27 -0.2
85,189 + CA264_00380 0.27 -0.1
85,189 + CA264_00380 0.27 +0.0
85,189 + CA264_00380 0.27 -0.1
85,190 - CA264_00380 0.27 -0.5
85,190 - CA264_00380 0.27 -0.7
85,190 - CA264_00380 0.27 +1.4
85,224 + CA264_00380 0.35 +0.9
85,249 - CA264_00380 0.40 -0.1
85,275 + CA264_00380 0.46 -0.0
85,275 + CA264_00380 0.46 +1.6
85,304 + CA264_00380 0.52 -0.1
85,374 + CA264_00380 0.68 +0.4
85,375 - CA264_00380 0.68 -0.3
85,394 + CA264_00380 0.72 -0.4
85,428 + CA264_00380 0.80 -1.0
85,433 - CA264_00380 0.81 -0.2
85,453 + CA264_00380 0.85 -0.7
85,460 + CA264_00380 0.87 +0.5
85,576 - +0.1
85,678 + +0.5
85,741 + +0.1
85,742 - -0.7
85,742 - -0.1
85,765 - -0.2
85,766 + +0.8
85,766 + -0.8
85,767 - -0.6
85,782 + -0.3
85,867 + CA264_00385 0.19 -0.0
85,905 + CA264_00385 0.23 -0.5
85,905 + CA264_00385 0.23 +0.1
85,905 + CA264_00385 0.23 -0.0
85,905 + CA264_00385 0.23 -0.3
86,093 + CA264_00385 0.45 -0.8
86,093 + CA264_00385 0.45 +0.3
86,267 + CA264_00385 0.65 -0.7
86,267 + CA264_00385 0.65 -0.7
86,267 + CA264_00385 0.65 -0.2
86,268 - CA264_00385 0.65 -0.4
86,300 + CA264_00385 0.69 -0.4
86,301 - CA264_00385 0.69 -0.1
86,304 + CA264_00385 0.69 -0.2
86,346 - CA264_00385 0.74 +0.3
86,350 - CA264_00385 0.75 -1.2
86,350 - CA264_00385 0.75 +0.2
86,366 - CA264_00385 0.76 -0.7
86,486 - -0.1
86,486 - +1.4
86,633 + -0.1
86,648 - -0.3
86,653 + +0.4
86,653 + +1.0
86,653 + -0.4
86,653 + +1.8
86,654 - -1.0
86,734 + CA264_00390 0.17 -0.3
86,760 - CA264_00390 0.22 +1.2
86,786 + CA264_00390 0.27 +0.1
86,844 + CA264_00390 0.39 +0.6
86,847 + CA264_00390 0.40 +0.2
86,847 + CA264_00390 0.40 +0.3
86,848 - CA264_00390 0.40 -0.2
86,913 - CA264_00390 0.54 +0.6
86,968 + CA264_00390 0.65 +0.7
86,994 - CA264_00390 0.70 +1.2
87,006 - CA264_00390 0.73 +1.3
87,009 + CA264_00390 0.73 +0.4
87,040 - CA264_00390 0.80 +0.6
87,043 + CA264_00390 0.81 -0.6
87,043 + CA264_00390 0.81 -1.0
87,043 + CA264_00390 0.81 -1.1
87,043 + CA264_00390 0.81 -1.3
87,043 + CA264_00390 0.81 -0.2
87,043 + CA264_00390 0.81 +0.1
87,043 + CA264_00390 0.81 +1.2
87,043 + CA264_00390 0.81 +0.1
87,043 + CA264_00390 0.81 -0.7
87,043 + CA264_00390 0.81 +0.3
87,043 + CA264_00390 0.81 -0.6
87,044 - CA264_00390 0.81 -0.2
87,044 - CA264_00390 0.81 -1.4
87,044 - CA264_00390 0.81 -0.3
87,044 - CA264_00390 0.81 +0.4
87,132 + +0.5
87,132 + -0.5
87,133 - +0.0
87,139 - -0.7
87,326 + CA264_00395 0.31 -0.6
87,326 + CA264_00395 0.31 +0.0
87,326 + CA264_00395 0.31 +0.4
87,326 + CA264_00395 0.31 +0.4
87,436 + CA264_00395 0.48 -0.5
87,437 - CA264_00395 0.48 -0.1
87,453 + CA264_00395 0.51 +0.4
87,489 + CA264_00395 0.57 +0.4
87,490 - CA264_00395 0.57 -0.9
87,534 - CA264_00395 0.64 -0.1
87,535 + CA264_00395 0.64 +0.0
87,536 - CA264_00395 0.64 -0.3
87,565 + CA264_00395 0.69 -0.3
87,566 - CA264_00395 0.69 -0.5
87,566 - CA264_00395 0.69 +0.2

Or see this region's nucleotide sequence