Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS31310

Experiment: NAG (C); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NAG (C); with MOPS
4,579,838	+				-1.6
4,579,838	+				-1.4
4,579,838	+				-0.9
4,579,838	+				-0.4
4,579,954	+				+0.4
4,579,955	-				-0.9
4,579,956	+				-1.0
4,579,972	+				-1.7
4,579,972	+				-2.8
4,579,972	+				+0.6
4,579,972	+				-1.2
4,579,972	+				+0.9
4,579,973	-				-1.1
4,579,973	-				+0.5
4,579,973	-				+1.2
4,579,973	-				+0.8
4,579,973	-				-1.4
4,579,973	-				+1.3
4,579,973	-				+1.3
4,579,973	-				+2.4
4,580,055	+				-1.0
4,580,055	+				+0.6
4,580,055	+				-1.5
4,580,055	+				-0.2
4,580,055	+				-0.9
4,580,055	+				-0.3
4,580,056	-				+0.3
4,580,056	-				+2.1
4,580,056	-				+0.8
4,580,056	-				-1.6
4,580,056	-				+1.7
4,580,056	-				-1.4
4,580,056	-				-1.0
4,580,058	+				-2.2
4,580,058	+				-0.4
4,580,081	-				+1.0
4,580,099	+				+0.6
4,580,099	+				+0.8
4,580,100	-				+1.2
4,580,100	-				+0.3
4,580,100	-				-0.3
4,580,100	-				+1.4
4,580,100	-				+1.3
4,580,160	+				+0.2
4,580,160	+				+0.3
4,580,160	+				+0.5
4,580,160	+				+0.0
4,580,160	+				-1.4
4,580,161	-				+0.3
4,580,161	-				+0.1
4,580,228	-				+1.3
4,580,228	-				-0.9
4,580,230	+				-1.8
4,580,230	+				+0.2
4,580,230	+				-2.8
4,580,230	+				-0.8
4,580,230	+				-0.1
4,580,231	-				+0.4
4,580,231	-				+0.5
4,580,240	+				-0.7
4,580,240	+				-0.5
4,580,241	-				-1.8
4,580,241	-				-0.2
4,580,300	+				+0.8
4,580,300	+				-0.1
4,580,303	+				+0.2
4,580,304	-				-1.0
4,580,304	-				+1.1
4,580,339	+				+0.1
4,580,339	+				+1.9
4,580,339	+				+1.1
4,580,340	-				+1.0
4,580,340	-				-1.4
4,580,357	-				+0.9
4,580,388	+				+0.9
4,580,428	+				+0.9
4,580,428	+				-0.4
4,580,437	+				+0.5
4,580,469	-				+0.1
4,580,479	+				+1.0
4,580,506	+				+1.6
4,580,506	+				-0.7
4,580,520	+				-0.1
4,580,520	+				+0.3
4,580,520	+				-1.0
4,580,521	-				+0.1
4,580,521	-				+0.1
4,580,521	-				+0.1
4,580,521	-				-0.2
4,580,597	+				-2.4
4,580,598	-				-0.8
4,580,598	-				+0.2
4,580,626	+				-0.7
4,580,894	-		PFLU_RS31310	0.45	+1.2
4,581,008	-				+0.5
4,581,020	+				+0.1
4,581,020	+				+0.3
4,581,021	-				+0.2
4,581,021	-				-0.0
4,581,039	+				+1.1
4,581,039	+				+0.4
4,581,039	+				-0.4
4,581,039	+				+0.9
4,581,039	+				-2.3
4,581,039	+				-0.4
4,581,039	+				-0.2
4,581,039	+				+2.4
4,581,039	+				-0.9
4,581,040	-				+1.3
4,581,040	-				+1.0
4,581,040	-				-0.4
4,581,040	-				-0.7
4,581,040	-				-1.3
4,581,040	-				+0.7
4,581,040	-				+0.7
4,581,040	-				-0.4
4,581,040	-				+2.1
4,581,040	-				+0.4
4,581,040	-				+0.8
4,581,040	-				-0.7
4,581,040	-				-0.3
4,581,113	+		PFLU_RS20245	0.17	-1.6
4,581,171	+		PFLU_RS20245	0.26	-1.8
4,581,171	+		PFLU_RS20245	0.26	-0.8
4,581,172	-		PFLU_RS20245	0.27	+0.8
4,581,172	-		PFLU_RS20245	0.27	+0.2
4,581,172	-		PFLU_RS20245	0.27	-1.3
4,581,172	-		PFLU_RS20245	0.27	-1.6
4,581,286	+		PFLU_RS20245	0.46	+0.2
4,581,286	+		PFLU_RS20245	0.46	-0.3
4,581,286	+		PFLU_RS20245	0.46	-0.7
4,581,286	+		PFLU_RS20245	0.46	-0.4
4,581,287	-		PFLU_RS20245	0.46	-2.4
4,581,293	+		PFLU_RS20245	0.47	-1.2
4,581,293	+		PFLU_RS20245	0.47	-1.3
4,581,293	+		PFLU_RS20245	0.47	+2.1
4,581,293	+		PFLU_RS20245	0.47	-0.3
4,581,293	+		PFLU_RS20245	0.47	+0.5
4,581,293	+		PFLU_RS20245	0.47	+0.6
4,581,294	-		PFLU_RS20245	0.47	+2.2
4,581,294	-		PFLU_RS20245	0.47	+0.2
4,581,294	-		PFLU_RS20245	0.47	-0.8
4,581,294	-		PFLU_RS20245	0.47	-0.2
4,581,294	-		PFLU_RS20245	0.47	+0.1
4,581,294	-		PFLU_RS20245	0.47	-0.5
4,581,461	-		PFLU_RS20245	0.75	+0.0
4,581,461	-		PFLU_RS20245	0.75	+0.0
4,581,527	-		PFLU_RS20245	0.86	-1.6
4,581,527	-		PFLU_RS20245	0.86	-0.1
4,581,600	+				+0.0
4,581,600	+				-0.4
4,581,600	+				-2.2
4,581,600	+				+1.6
4,581,600	+				+0.7
4,581,600	+				+0.0
4,581,601	-				-0.8
4,581,601	-				-0.3
4,581,601	-				+0.2
4,581,601	-				-0.6
4,581,601	-				-1.4
4,581,601	-				+0.0
4,581,618	-				-1.6
4,581,629	+				+0.6
4,581,629	+				-1.0
4,581,629	+				+0.2
4,581,629	+				-0.9
4,581,630	-				-0.6
4,581,630	-				+3.4
4,581,630	-				-0.5
4,581,630	-				-0.8
4,581,630	-				-2.0
4,581,710	+		PFLU_RS20250	0.16	+1.0
4,581,720	+		PFLU_RS20250	0.18	-2.2
4,581,720	+		PFLU_RS20250	0.18	+0.2
4,581,720	+		PFLU_RS20250	0.18	-0.4
4,581,720	+		PFLU_RS20250	0.18	+1.1
4,581,720	+		PFLU_RS20250	0.18	-0.1
4,581,721	-		PFLU_RS20250	0.18	+1.3
4,581,721	-		PFLU_RS20250	0.18	+0.8
4,581,801	+		PFLU_RS20250	0.30	-1.0
4,581,868	+		PFLU_RS20250	0.40	-2.2
4,581,868	+		PFLU_RS20250	0.40	+0.4
4,581,868	+		PFLU_RS20250	0.40	+1.1
4,581,868	+		PFLU_RS20250	0.40	-0.6
4,581,868	+		PFLU_RS20250	0.40	-0.9
4,581,868	+		PFLU_RS20250	0.40	-1.1
4,581,868	+		PFLU_RS20250	0.40	-1.5
4,581,869	-		PFLU_RS20250	0.40	-1.2
4,581,869	-		PFLU_RS20250	0.40	-0.8
4,581,869	-		PFLU_RS20250	0.40	-0.7
4,581,869	-		PFLU_RS20250	0.40	+0.6
4,581,869	-		PFLU_RS20250	0.40	+1.0
4,581,869	-		PFLU_RS20250	0.40	+0.7
4,581,869	-		PFLU_RS20250	0.40	-0.2
4,581,882	-		PFLU_RS20250	0.42	+0.4
4,581,904	+		PFLU_RS20250	0.46	+2.7
4,581,904	+		PFLU_RS20250	0.46	+0.4
4,581,904	+		PFLU_RS20250	0.46	+0.6
4,581,904	+		PFLU_RS20250	0.46	+1.3
4,581,904	+		PFLU_RS20250	0.46	+0.2
4,581,904	+		PFLU_RS20250	0.46	+1.5
4,581,904	+		PFLU_RS20250	0.46	-2.1
4,581,904	+		PFLU_RS20250	0.46	+0.9
4,581,905	-		PFLU_RS20250	0.46	+0.7
4,581,905	-		PFLU_RS20250	0.46	-1.0
4,581,905	-		PFLU_RS20250	0.46	+1.6
4,581,905	-		PFLU_RS20250	0.46	-0.1
4,581,905	-		PFLU_RS20250	0.46	-0.1
4,581,905	-		PFLU_RS20250	0.46	+0.9
4,581,905	-		PFLU_RS20250	0.46	-2.6
4,581,905	-		PFLU_RS20250	0.46	-1.1
4,581,905	-		PFLU_RS20250	0.46	+1.3
4,581,905	-		PFLU_RS20250	0.46	+0.1
4,581,905	-		PFLU_RS20250	0.46	+1.1
4,581,905	-		PFLU_RS20250	0.46	+1.6
4,581,940	-		PFLU_RS20250	0.51	-0.5
4,581,972	+		PFLU_RS20250	0.56	+0.3
4,581,973	-		PFLU_RS20250	0.56	-1.8
4,581,973	-		PFLU_RS20250	0.56	+2.4
4,581,997	+		PFLU_RS20250	0.60	+1.0
4,581,997	+		PFLU_RS20250	0.60	+1.4
4,581,997	+		PFLU_RS20250	0.60	+0.6
4,581,997	+		PFLU_RS20250	0.60	-1.8
4,581,997	+		PFLU_RS20250	0.60	+1.2
4,581,997	+		PFLU_RS20250	0.60	+0.1
4,581,997	+		PFLU_RS20250	0.60	-0.2
4,581,997	+		PFLU_RS20250	0.60	-0.1
4,581,998	-		PFLU_RS20250	0.60	-0.0
4,581,998	-		PFLU_RS20250	0.60	+0.1
4,581,998	-		PFLU_RS20250	0.60	-0.2
4,581,998	-		PFLU_RS20250	0.60	+2.7
4,581,998	-		PFLU_RS20250	0.60	-0.1
4,581,998	-		PFLU_RS20250	0.60	-0.9
4,581,998	-		PFLU_RS20250	0.60	+0.6
4,581,998	-		PFLU_RS20250	0.60	-0.0
4,581,998	-		PFLU_RS20250	0.60	+1.9
4,581,998	-		PFLU_RS20250	0.60	-1.3