Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS28535

Experiment: NAG (C); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NAG (C); with MOPS
6,346,451	+		PFLU_RS28530	0.42	+0.5
6,346,451	+		PFLU_RS28530	0.42	-0.4
6,346,451	+		PFLU_RS28530	0.42	+0.9
6,346,451	+		PFLU_RS28530	0.42	+0.8
6,346,451	+		PFLU_RS28530	0.42	+0.1
6,346,452	-		PFLU_RS28530	0.42	+1.6
6,346,452	-		PFLU_RS28530	0.42	+0.2
6,346,452	-		PFLU_RS28530	0.42	+0.5
6,346,452	-		PFLU_RS28530	0.42	+0.9
6,346,452	-		PFLU_RS28530	0.42	+0.8
6,346,452	-		PFLU_RS28530	0.42	-1.2
6,346,452	-		PFLU_RS28530	0.42	-0.7
6,346,452	-		PFLU_RS28530	0.42	+0.7
6,346,452	-		PFLU_RS28530	0.42	+0.1
6,346,452	-		PFLU_RS28530	0.42	+1.4
6,346,452	-		PFLU_RS28530	0.42	-1.3
6,346,452	-		PFLU_RS28530	0.42	-0.7
6,346,459	+		PFLU_RS28530	0.43	-0.3
6,346,459	+		PFLU_RS28530	0.43	+0.9
6,346,459	+		PFLU_RS28530	0.43	+0.6
6,346,459	+		PFLU_RS28530	0.43	+2.8
6,346,460	-		PFLU_RS28530	0.43	-1.3
6,346,460	-		PFLU_RS28530	0.43	-0.8
6,346,461	+		PFLU_RS28530	0.43	+1.5
6,346,461	+		PFLU_RS28530	0.43	-1.1
6,346,461	+		PFLU_RS28530	0.43	-0.6
6,346,462	-		PFLU_RS28530	0.43	+0.9
6,346,462	-		PFLU_RS28530	0.43	-0.1
6,346,500	+		PFLU_RS28530	0.46	+1.1
6,346,556	+		PFLU_RS28530	0.51	+1.0
6,346,592	+		PFLU_RS28530	0.54	+0.9
6,346,592	+		PFLU_RS28530	0.54	+0.1
6,346,592	+		PFLU_RS28530	0.54	-0.5
6,346,592	+		PFLU_RS28530	0.54	+1.0
6,346,592	+		PFLU_RS28530	0.54	+0.4
6,346,592	+		PFLU_RS28530	0.54	-0.8
6,346,592	+		PFLU_RS28530	0.54	+0.8
6,346,592	+		PFLU_RS28530	0.54	-1.1
6,346,592	+		PFLU_RS28530	0.54	+1.0
6,346,593	-		PFLU_RS28530	0.54	-2.4
6,346,593	-		PFLU_RS28530	0.54	+0.6
6,346,593	-		PFLU_RS28530	0.54	+0.9
6,346,593	-		PFLU_RS28530	0.54	-0.9
6,346,593	-		PFLU_RS28530	0.54	+0.4
6,346,593	-		PFLU_RS28530	0.54	-1.9
6,346,593	-		PFLU_RS28530	0.54	+0.3
6,346,593	-		PFLU_RS28530	0.54	+0.1
6,346,593	-		PFLU_RS28530	0.54	+0.8
6,346,612	+		PFLU_RS28530	0.56	+0.0
6,346,612	+		PFLU_RS28530	0.56	-1.4
6,346,671	+		PFLU_RS28530	0.61	-0.5
6,346,671	+		PFLU_RS28530	0.61	-0.8
6,346,672	-		PFLU_RS28530	0.61	+0.7
6,346,672	-		PFLU_RS28530	0.61	+0.0
6,346,672	-		PFLU_RS28530	0.61	+0.8
6,346,672	-		PFLU_RS28530	0.61	+0.5
6,346,691	+		PFLU_RS28530	0.62	-2.3
6,346,691	+		PFLU_RS28530	0.62	+0.9
6,346,691	+		PFLU_RS28530	0.62	-0.5
6,346,691	+		PFLU_RS28530	0.62	+0.4
6,346,691	+		PFLU_RS28530	0.62	-0.7
6,346,691	+		PFLU_RS28530	0.62	-1.1
6,346,692	-		PFLU_RS28530	0.63	+0.6
6,346,692	-		PFLU_RS28530	0.63	+0.7
6,346,712	+		PFLU_RS28530	0.64	-1.1
6,346,724	+		PFLU_RS28530	0.65	-2.1
6,346,724	+		PFLU_RS28530	0.65	-0.0
6,346,724	+		PFLU_RS28530	0.65	-2.1
6,346,724	+		PFLU_RS28530	0.65	+1.1
6,346,724	+		PFLU_RS28530	0.65	-1.2
6,346,725	-		PFLU_RS28530	0.65	-0.0
6,346,725	-		PFLU_RS28530	0.65	+0.4
6,346,725	-		PFLU_RS28530	0.65	-0.2
6,346,725	-		PFLU_RS28530	0.65	-0.2
6,346,725	-		PFLU_RS28530	0.65	+1.6
6,346,728	+		PFLU_RS28530	0.66	+0.2
6,346,728	+		PFLU_RS28530	0.66	+0.2
6,346,759	+		PFLU_RS28530	0.68	-0.5
6,346,760	-		PFLU_RS28530	0.68	-1.2
6,346,760	-		PFLU_RS28530	0.68	+0.6
6,346,760	-		PFLU_RS28530	0.68	+1.1
6,346,801	-		PFLU_RS28530	0.72	+0.6
6,346,855	-		PFLU_RS28530	0.76	-0.7
6,346,924	+		PFLU_RS28530	0.82	-1.4
6,346,990	-		PFLU_RS28530	0.88	-1.6
6,346,990	-		PFLU_RS28530	0.88	+0.8
6,346,992	+		PFLU_RS28530	0.88	-0.0
6,346,992	+		PFLU_RS28530	0.88	+0.9
6,346,992	+		PFLU_RS28530	0.88	-0.0
6,346,992	+		PFLU_RS28530	0.88	-2.3
6,346,992	+		PFLU_RS28530	0.88	+0.9
6,346,992	+		PFLU_RS28530	0.88	-0.8
6,346,992	+		PFLU_RS28530	0.88	-1.2
6,346,992	+		PFLU_RS28530	0.88	+0.3
6,346,992	+		PFLU_RS28530	0.88	+0.5
6,346,992	+		PFLU_RS28530	0.88	-0.6
6,346,992	+		PFLU_RS28530	0.88	-0.4
6,346,992	+		PFLU_RS28530	0.88	+0.2
6,346,993	-		PFLU_RS28530	0.88	+0.6
6,346,993	-		PFLU_RS28530	0.88	-0.2
6,346,993	-		PFLU_RS28530	0.88	-0.5
6,346,993	-		PFLU_RS28530	0.88	+0.4
6,346,993	-		PFLU_RS28530	0.88	+1.3
6,347,011	+		PFLU_RS28530	0.89	+0.1
6,347,011	+		PFLU_RS28530	0.89	+1.0
6,347,012	-		PFLU_RS28530	0.89	-1.0
6,347,036	-				-0.3
6,347,176	+				+0.0
6,347,177	-				-0.2
6,347,185	-				+1.6
6,347,185	-				+0.6
6,347,185	-				-0.0
6,347,195	+				-0.1
6,347,226	-				+0.4
6,347,316	+				+0.3
6,347,316	+				+0.5
6,347,316	+				+0.3
6,347,317	-				+0.0
6,347,334	+				-0.0
6,347,335	-				-2.4
6,347,335	-				-2.6
6,347,335	-				-0.0
6,347,335	-				+0.8
6,347,335	-				-1.6
6,347,337	+				+0.2
6,347,337	+				-0.4
6,347,337	+				+0.2
6,347,337	+				-1.0
6,347,337	+				-4.0
6,347,338	-				-3.4
6,347,338	-				-0.8
6,347,338	-				+0.9
6,347,338	-				-1.0
6,347,338	-				-2.3
6,347,338	-				-1.5
6,347,344	+				-1.7
6,347,344	+				+1.7
6,347,345	-				-2.0
6,347,345	-				-3.1
6,347,345	-				-2.5
6,347,345	-				-1.4
6,347,345	-				-1.6
6,347,347	+				-1.0
6,347,347	+				-0.3
6,347,347	+				-0.4
6,347,347	+				+1.9
6,347,347	+				-1.3
6,347,347	+				+0.7
6,347,347	+				-0.2
6,347,347	+				+0.9
6,347,347	+				+0.9
6,347,347	+				-0.3
6,347,347	+				-2.0
6,347,347	+				+1.0
6,347,347	+				+0.3
6,347,347	+				+0.1
6,347,347	+				+0.8
6,347,347	+				-0.3
6,347,347	+				+1.0
6,347,347	+				+1.5
6,347,347	+				+1.5
6,347,347	+				+1.1
6,347,347	+				-1.3
6,347,347	+				-2.8
6,347,348	-				-2.7
6,347,348	-				-2.9
6,347,348	-				-2.2
6,347,348	-				-4.2
6,347,348	-				-1.1
6,347,348	-				-0.8
6,347,348	-				-2.5
6,347,348	-				-3.5
6,347,348	-				-3.2
6,347,348	-				-2.6
6,347,348	-				-1.2
6,347,348	-				-3.6
6,347,348	-				-1.6
6,347,348	-				-0.2
6,347,348	-				-2.3
6,347,348	-				-2.8
6,347,351	+				+1.0
6,347,351	+				+0.7
6,347,351	+				-0.6
6,347,351	+				+1.2
6,347,351	+				+0.0
6,347,351	+				+0.5
6,347,351	+				-0.4
6,347,351	+				-0.3
6,347,351	+				-0.1
6,347,351	+				+0.7
6,347,351	+				+1.0
6,347,351	+				-0.1
6,347,351	+				+0.7
6,347,351	+				-0.2
6,347,352	-				-3.3
6,347,352	-				-2.4
6,347,352	-				-1.2
6,347,352	-				-1.4
6,347,352	-				-1.6
6,347,352	-				-2.9
6,347,352	-				-3.1
6,347,352	-				-2.3
6,347,651	+		PFLU_RS28535	0.15	-3.3
6,347,651	+		PFLU_RS28535	0.15	-1.6
6,347,651	+		PFLU_RS28535	0.15	-2.1
6,347,651	+		PFLU_RS28535	0.15	-3.5
6,347,651	+		PFLU_RS28535	0.15	-3.0
6,347,651	+		PFLU_RS28535	0.15	-2.2
6,347,651	+		PFLU_RS28535	0.15	-1.4
6,347,651	+		PFLU_RS28535	0.15	-2.2
6,347,652	-		PFLU_RS28535	0.15	-3.4
6,347,652	-		PFLU_RS28535	0.15	-2.4
6,347,652	-		PFLU_RS28535	0.15	-3.3
6,347,693	+		PFLU_RS28535	0.17	-2.2
6,347,693	+		PFLU_RS28535	0.17	-3.0
6,347,693	+		PFLU_RS28535	0.17	-3.3
6,347,693	+		PFLU_RS28535	0.17	-2.4
6,347,693	+		PFLU_RS28535	0.17	-3.3
6,347,693	+		PFLU_RS28535	0.17	-2.9
6,347,693	+		PFLU_RS28535	0.17	-1.0
6,347,694	-		PFLU_RS28535	0.17	-2.8
6,347,694	-		PFLU_RS28535	0.17	-2.1
6,347,694	-		PFLU_RS28535	0.17	-1.2
6,347,694	-		PFLU_RS28535	0.17	-3.5
6,347,694	-		PFLU_RS28535	0.17	-2.5
6,347,694	-		PFLU_RS28535	0.17	-2.1
6,347,694	-		PFLU_RS28535	0.17	-3.1
6,347,694	-		PFLU_RS28535	0.17	-1.1
6,347,694	-		PFLU_RS28535	0.17	-1.4
6,347,694	-		PFLU_RS28535	0.17	-4.1
6,347,727	+		PFLU_RS28535	0.19	-3.4
6,347,727	+		PFLU_RS28535	0.19	-2.6
6,347,727	+		PFLU_RS28535	0.19	-3.4
6,347,727	+		PFLU_RS28535	0.19	-1.9
6,347,727	+		PFLU_RS28535	0.19	-2.1
6,347,727	+		PFLU_RS28535	0.19	-1.9
6,347,727	+		PFLU_RS28535	0.19	-1.8
6,347,727	+		PFLU_RS28535	0.19	-1.9
6,347,727	+		PFLU_RS28535	0.19	-3.1
6,347,727	+		PFLU_RS28535	0.19	-3.3
6,347,727	+		PFLU_RS28535	0.19	-3.7
6,347,727	+		PFLU_RS28535	0.19	-1.6
6,347,727	+		PFLU_RS28535	0.19	-1.8
6,347,727	+		PFLU_RS28535	0.19	-3.0
6,347,727	+		PFLU_RS28535	0.19	-2.7
6,347,727	+		PFLU_RS28535	0.19	-2.0
6,347,728	-		PFLU_RS28535	0.19	-1.0
6,347,728	-		PFLU_RS28535	0.19	-3.1
6,347,728	-		PFLU_RS28535	0.19	-2.4
6,347,728	-		PFLU_RS28535	0.19	-0.8
6,347,728	-		PFLU_RS28535	0.19	-4.0
6,347,728	-		PFLU_RS28535	0.19	-2.5
6,347,728	-		PFLU_RS28535	0.19	-1.7
6,347,728	-		PFLU_RS28535	0.19	-3.2
6,347,728	-		PFLU_RS28535	0.19	-2.5
6,347,728	-		PFLU_RS28535	0.19	-2.4
6,347,728	-		PFLU_RS28535	0.19	-0.4
6,347,728	-		PFLU_RS28535	0.19	-2.2
6,347,922	-		PFLU_RS28535	0.30	-0.4
6,348,082	+		PFLU_RS28535	0.38	-2.0
6,348,083	-		PFLU_RS28535	0.38	-3.4
6,348,107	+		PFLU_RS28535	0.40	-0.6
6,348,107	+		PFLU_RS28535	0.40	-3.0
6,348,108	-		PFLU_RS28535	0.40	-1.2
6,348,110	+		PFLU_RS28535	0.40	-2.9
6,348,110	+		PFLU_RS28535	0.40	-2.7
6,348,110	+		PFLU_RS28535	0.40	-1.8
6,348,111	-		PFLU_RS28535	0.40	+0.4
6,348,111	-		PFLU_RS28535	0.40	-2.6
6,348,111	-		PFLU_RS28535	0.40	-3.3
6,348,111	-		PFLU_RS28535	0.40	-2.3
6,348,333	-		PFLU_RS28535	0.52	-2.0
6,348,333	-		PFLU_RS28535	0.52	-2.5
6,348,333	-		PFLU_RS28535	0.52	-2.5
6,348,618	-		PFLU_RS28535	0.67	-3.6
6,348,618	-		PFLU_RS28535	0.67	-3.1
6,348,647	+		PFLU_RS28535	0.69	-3.5
6,348,648	-		PFLU_RS28535	0.69	-1.4
6,348,734	+		PFLU_RS28535	0.74	-2.6
6,348,734	+		PFLU_RS28535	0.74	-4.2
6,348,734	+		PFLU_RS28535	0.74	-3.7
6,348,734	+		PFLU_RS28535	0.74	-1.4
6,348,734	+		PFLU_RS28535	0.74	-3.0
6,348,734	+		PFLU_RS28535	0.74	-1.9
6,348,735	-		PFLU_RS28535	0.74	+2.4
6,348,735	-		PFLU_RS28535	0.74	-3.1
6,348,735	-		PFLU_RS28535	0.74	-3.1
6,348,735	-		PFLU_RS28535	0.74	-3.5
6,348,735	-		PFLU_RS28535	0.74	-3.2
6,348,735	-		PFLU_RS28535	0.74	-2.0
6,348,835	+		PFLU_RS28535	0.79	-2.2
6,348,851	+		PFLU_RS28535	0.80	-2.8
6,348,851	+		PFLU_RS28535	0.80	-1.8
6,348,863	+		PFLU_RS28535	0.81	-2.2
6,348,864	-		PFLU_RS28535	0.81	-2.3
6,349,126	+				+0.8
6,349,126	+				-2.0
6,349,126	+				-2.3
6,349,126	+				-2.2
6,349,126	+				-1.2
6,349,151	+				-2.0
6,349,152	-				-3.6
6,349,152	-				-2.3
6,349,152	-				-2.0
6,349,152	-				-2.4
6,349,152	-				-2.6
6,349,152	-				-1.0
6,349,193	-				-2.2
6,349,217	+				+0.8
6,349,217	+				+0.2
6,349,217	+				+1.2
6,349,218	-				+1.1
6,349,317	-				-0.6
6,349,317	-				-0.1
6,349,317	-				-0.1
6,349,331	+				-1.1
6,349,331	+				+0.8
6,349,331	+				+0.6
6,349,331	+				+0.6
6,349,331	+				-0.1
6,349,331	+				+0.4
6,349,331	+				-1.0
6,349,331	+				-0.3
6,349,332	-				+0.9
6,349,332	-				+0.5
6,349,332	-				-2.3
6,349,332	-				-2.8
6,349,342	-				-0.6
6,349,342	-				+0.0
6,349,342	-				-0.7
6,349,367	+				-2.4
6,349,367	+				+0.0
6,349,368	-				-0.2
6,349,368	-				+1.4
6,349,368	-				-1.7
6,349,370	+				-1.2
6,349,370	+				-0.9
6,349,370	+				-2.2
6,349,370	+				+1.1
6,349,370	+				-0.4
6,349,370	+				+0.7
6,349,370	+				+1.7
6,349,370	+				-1.4
6,349,370	+				-2.1
6,349,370	+				-0.7
6,349,370	+				+0.0
6,349,370	+				-0.5
6,349,370	+				+0.1
6,349,370	+				+0.5
6,349,370	+				-0.7
6,349,370	+				-0.0
6,349,370	+				+0.1
6,349,370	+				-0.2
6,349,370	+				-0.2
6,349,370	+				+0.1
6,349,370	+				+0.6
6,349,370	+				-1.4
6,349,370	+				+1.2
6,349,371	-				+0.8
6,349,371	-				+2.0
6,349,371	-				+0.6
6,349,371	-				-0.6
6,349,371	-				+0.1
6,349,371	-				-0.2
6,349,371	-				-2.4
6,349,371	-				-1.8
6,349,371	-				+0.7
6,349,371	-				+1.2
6,349,371	-				+0.1
6,349,371	-				-0.5
6,349,371	-				+0.8
6,349,371	-				-1.0
6,349,374	+				+0.1
6,349,374	+				+1.0
6,349,375	-				-2.5
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