Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS22210

Experiment: NAG (C); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NAG (C); with MOPS
4,993,722	+		PFLU_RS22205	0.24	+1.1
4,993,722	+		PFLU_RS22205	0.24	-0.1
4,993,722	+		PFLU_RS22205	0.24	+1.3
4,993,722	+		PFLU_RS22205	0.24	+1.9
4,993,722	+		PFLU_RS22205	0.24	-1.1
4,993,722	+		PFLU_RS22205	0.24	+2.5
4,993,722	+		PFLU_RS22205	0.24	-0.8
4,993,722	+		PFLU_RS22205	0.24	+0.8
4,993,722	+		PFLU_RS22205	0.24	+1.7
4,993,722	+		PFLU_RS22205	0.24	+1.3
4,993,722	+		PFLU_RS22205	0.24	-0.2
4,993,722	+		PFLU_RS22205	0.24	-0.1
4,993,722	+		PFLU_RS22205	0.24	+1.2
4,993,722	+		PFLU_RS22205	0.24	-0.9
4,993,723	-		PFLU_RS22205	0.24	-1.1
4,993,723	-		PFLU_RS22205	0.24	-0.0
4,993,723	-		PFLU_RS22205	0.24	+0.1
4,993,723	-		PFLU_RS22205	0.24	-0.8
4,993,723	-		PFLU_RS22205	0.24	-1.2
4,993,723	-		PFLU_RS22205	0.24	+0.3
4,993,851	+		PFLU_RS22205	0.39	+0.2
4,993,851	+		PFLU_RS22205	0.39	-0.3
4,993,852	-		PFLU_RS22205	0.39	+0.1
4,993,914	+		PFLU_RS22205	0.46	+0.2
4,993,914	+		PFLU_RS22205	0.46	+1.0
4,993,914	+		PFLU_RS22205	0.46	-1.0
4,993,914	+		PFLU_RS22205	0.46	+0.2
4,993,915	-		PFLU_RS22205	0.46	-0.2
4,993,915	-		PFLU_RS22205	0.46	+0.3
4,993,915	-		PFLU_RS22205	0.46	-0.4
4,993,915	-		PFLU_RS22205	0.46	-1.5
4,993,935	+		PFLU_RS22205	0.48	+0.5
4,993,935	+		PFLU_RS22205	0.48	+1.3
4,993,935	+		PFLU_RS22205	0.48	-0.4
4,993,935	+		PFLU_RS22205	0.48	-0.5
4,993,936	-		PFLU_RS22205	0.49	-0.2
4,993,936	-		PFLU_RS22205	0.49	+0.4
4,993,936	-		PFLU_RS22205	0.49	-0.1
4,993,936	-		PFLU_RS22205	0.49	-3.0
4,993,936	-		PFLU_RS22205	0.49	-0.3
4,993,936	-		PFLU_RS22205	0.49	-1.2
4,993,936	-		PFLU_RS22205	0.49	-1.7
4,994,157	+		PFLU_RS22205	0.74	+0.5
4,994,157	+		PFLU_RS22205	0.74	+1.3
4,994,157	+		PFLU_RS22205	0.74	-1.4
4,994,157	+		PFLU_RS22205	0.74	-1.1
4,994,169	+		PFLU_RS22205	0.75	-0.6
4,994,169	+		PFLU_RS22205	0.75	+0.3
4,994,169	+		PFLU_RS22205	0.75	+0.3
4,994,169	+		PFLU_RS22205	0.75	-1.3
4,994,169	+		PFLU_RS22205	0.75	-0.1
4,994,169	+		PFLU_RS22205	0.75	+0.2
4,994,169	+		PFLU_RS22205	0.75	+1.5
4,994,169	+		PFLU_RS22205	0.75	-0.6
4,994,169	+		PFLU_RS22205	0.75	-2.7
4,994,169	+		PFLU_RS22205	0.75	+0.9
4,994,169	+		PFLU_RS22205	0.75	-0.0
4,994,169	+		PFLU_RS22205	0.75	+1.1
4,994,169	+		PFLU_RS22205	0.75	+0.6
4,994,170	-		PFLU_RS22205	0.75	-0.6
4,994,170	-		PFLU_RS22205	0.75	-0.7
4,994,170	-		PFLU_RS22205	0.75	+0.1
4,994,170	-		PFLU_RS22205	0.75	-0.1
4,994,170	-		PFLU_RS22205	0.75	+1.2
4,994,170	-		PFLU_RS22205	0.75	-2.8
4,994,170	-		PFLU_RS22205	0.75	+2.2
4,994,170	-		PFLU_RS22205	0.75	-1.7
4,994,170	-		PFLU_RS22205	0.75	+0.1
4,994,170	-		PFLU_RS22205	0.75	+0.7
4,994,170	-		PFLU_RS22205	0.75	-1.1
4,994,170	-		PFLU_RS22205	0.75	-0.4
4,994,170	-		PFLU_RS22205	0.75	+0.0
4,994,170	-		PFLU_RS22205	0.75	+1.7
4,994,170	-		PFLU_RS22205	0.75	+0.1
4,994,228	+		PFLU_RS22205	0.82	+0.5
4,994,228	+		PFLU_RS22205	0.82	-0.2
4,994,228	+		PFLU_RS22205	0.82	-2.7
4,994,254	+		PFLU_RS22205	0.85	-0.3
4,994,254	+		PFLU_RS22205	0.85	-0.4
4,994,298	+				+0.9
4,994,298	+				-0.7
4,994,298	+				+1.7
4,994,298	+				-0.3
4,994,298	+				+1.3
4,994,299	-				+0.3
4,994,299	-				+0.5
4,994,299	-				+1.3
4,994,323	-				+0.8
4,994,323	-				+0.4
4,994,323	-				+0.9
4,994,372	+				-0.3
4,994,372	+				-1.1
4,994,372	+				-0.4
4,994,372	+				-0.2
4,994,372	+				-1.8
4,994,373	-				+1.4
4,994,373	-				+1.2
4,994,373	-				-1.0
4,994,373	-				-0.9
4,994,373	-				+0.1
4,994,373	-				-1.9
4,994,373	-				-1.3
4,994,373	-				-0.6
4,994,376	+				-0.8
4,994,376	+				+0.4
4,994,376	+				-1.2
4,994,376	+				-0.5
4,994,376	+				+1.5
4,994,376	+				-0.6
4,994,377	-				-1.3
4,994,377	-				+0.1
4,994,377	-				+1.3
4,994,377	-				-0.3
4,994,377	-				-0.1
4,994,377	-				+0.7
4,994,526	+				+1.9
4,994,527	-				-0.5
4,994,553	+				-0.4
4,994,553	+				+0.5
4,994,553	+				+0.5
4,994,553	+				-1.7
4,994,553	+				-0.4
4,994,553	+				-0.6
4,994,553	+				+0.2
4,994,553	+				-0.9
4,994,554	-				-0.8
4,994,554	-				+1.1
4,994,554	-				-0.5
4,994,554	-				+1.2
4,994,554	-				+1.1
4,994,568	+				+1.2
4,994,568	+				-1.2
4,994,568	+				+0.5
4,994,568	+				+0.9
4,994,569	-				-1.8
4,994,569	-				-1.8
4,994,569	-				-0.8
4,994,719	+		PFLU_RS22210	0.22	-0.3
4,994,720	-		PFLU_RS22210	0.22	+1.3
4,994,720	-		PFLU_RS22210	0.22	+1.2
4,994,720	-		PFLU_RS22210	0.22	-0.5
4,994,720	-		PFLU_RS22210	0.22	-0.6
4,994,824	+		PFLU_RS22210	0.40	-0.1
4,994,824	+		PFLU_RS22210	0.40	+0.1
4,994,825	-		PFLU_RS22210	0.40	-1.2
4,994,825	-		PFLU_RS22210	0.40	-1.0
4,994,825	-		PFLU_RS22210	0.40	+1.2
4,994,825	-		PFLU_RS22210	0.40	-0.7
4,994,825	-		PFLU_RS22210	0.40	-3.3
4,994,896	+		PFLU_RS22210	0.52	-0.6
4,994,896	+		PFLU_RS22210	0.52	-3.1
4,994,896	+		PFLU_RS22210	0.52	-0.8
4,994,896	+		PFLU_RS22210	0.52	+0.7
4,994,897	-		PFLU_RS22210	0.52	+0.3
4,995,193	+				-1.5
4,995,193	+				-0.8
4,995,193	+				-0.8
4,995,193	+				-1.8
4,995,194	-				+0.5
4,995,194	-				-0.8
4,995,194	-				-1.4
4,995,194	-				-0.6
4,995,194	-				+0.0
4,995,194	-				+0.2
4,995,194	-				-1.0
4,995,206	+				-0.3
4,995,206	+				+1.4
4,995,207	-				+1.4
4,995,207	-				-0.9
4,995,207	-				-0.1
4,995,207	-				+0.7
4,995,207	-				+0.6
4,995,215	+				-1.0
4,995,215	+				+0.1
4,995,215	+				-0.8
4,995,215	+				-2.9
4,995,216	-				-0.5
4,995,216	-				+1.6
4,995,216	-				+1.1
4,995,216	-				-0.6
4,995,216	-				-0.8
4,995,216	-				+0.2
4,995,216	-				+1.6
4,995,235	+				+0.7
4,995,337	+				+0.1
4,995,337	+				+0.6
4,995,499	+		PFLU_RS22215	0.52	+0.7
4,995,500	-		PFLU_RS22215	0.52	+0.2
4,995,503	+		PFLU_RS22215	0.53	-2.1
4,995,504	-		PFLU_RS22215	0.53	+0.7
4,995,504	-		PFLU_RS22215	0.53	-3.3
4,995,550	+		PFLU_RS22215	0.68	+1.2
4,995,551	-		PFLU_RS22215	0.68	-2.5
4,995,551	-		PFLU_RS22215	0.68	+1.0
4,995,551	-		PFLU_RS22215	0.68	-0.3
4,995,665	+				-0.3
4,995,666	-				+0.1
4,995,680	+				+0.7
4,995,681	-				-1.8
4,995,717	+				+0.3
4,995,814	+		PFLU_RS22220	0.12	-1.3
4,995,814	+		PFLU_RS22220	0.12	-1.3
4,995,814	+		PFLU_RS22220	0.12	+0.5
4,995,814	+		PFLU_RS22220	0.12	+1.2
4,995,814	+		PFLU_RS22220	0.12	+1.0
4,995,815	-		PFLU_RS22220	0.12	-1.1
4,995,966	+		PFLU_RS22220	0.29	+0.0
4,995,966	+		PFLU_RS22220	0.29	-0.3
4,995,966	+		PFLU_RS22220	0.29	-0.3
4,995,966	+		PFLU_RS22220	0.29	+0.9
4,995,967	-		PFLU_RS22220	0.29	+0.7
4,995,992	+		PFLU_RS22220	0.32	+0.3
4,995,992	+		PFLU_RS22220	0.32	-2.2
4,995,992	+		PFLU_RS22220	0.32	+1.7
4,995,992	+		PFLU_RS22220	0.32	+1.1
4,995,992	+		PFLU_RS22220	0.32	+0.7
4,995,992	+		PFLU_RS22220	0.32	-2.3
4,995,993	-		PFLU_RS22220	0.32	-0.3
4,995,993	-		PFLU_RS22220	0.32	-0.4
4,995,993	-		PFLU_RS22220	0.32	-0.3
4,996,172	-		PFLU_RS22220	0.51	-1.1