Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS10690

Experiment: NAG (C); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NAG (C); with MOPS
2,353,730	+				-0.8
2,353,730	+				-1.4
2,353,730	+				+0.4
2,353,740	+				+1.5
2,353,740	+				+0.8
2,353,740	+				+0.0
2,353,740	+				+1.0
2,353,740	+				-1.2
2,353,740	+				-0.9
2,353,741	-				+0.9
2,353,741	-				+1.1
2,353,741	-				+1.0
2,353,741	-				-0.5
2,353,846	+		PFLU_RS10685	0.18	-0.8
2,353,898	+		PFLU_RS10685	0.24	-0.8
2,353,950	+		PFLU_RS10685	0.30	-0.4
2,353,950	+		PFLU_RS10685	0.30	+0.5
2,353,979	+		PFLU_RS10685	0.33	+0.5
2,353,979	+		PFLU_RS10685	0.33	-1.1
2,353,979	+		PFLU_RS10685	0.33	-2.1
2,353,980	-		PFLU_RS10685	0.33	-3.3
2,354,037	+		PFLU_RS10685	0.40	-1.1
2,354,052	+		PFLU_RS10685	0.41	-0.7
2,354,052	+		PFLU_RS10685	0.41	-0.0
2,354,053	-		PFLU_RS10685	0.42	-0.1
2,354,053	-		PFLU_RS10685	0.42	-0.5
2,354,103	+		PFLU_RS10685	0.47	-1.9
2,354,216	+		PFLU_RS10685	0.60	-0.9
2,354,242	+		PFLU_RS10685	0.63	-1.0
2,354,242	+		PFLU_RS10685	0.63	-0.9
2,354,242	+		PFLU_RS10685	0.63	-0.1
2,354,243	-		PFLU_RS10685	0.63	+1.3
2,354,243	-		PFLU_RS10685	0.63	+0.2
2,354,243	-		PFLU_RS10685	0.63	-0.6
2,354,271	+		PFLU_RS10685	0.66	+1.0
2,354,272	-		PFLU_RS10685	0.66	-1.7
2,354,278	+		PFLU_RS10685	0.67	-0.1
2,354,279	-		PFLU_RS10685	0.67	+0.8
2,354,303	+		PFLU_RS10685	0.70	-0.7
2,354,304	-		PFLU_RS10685	0.70	-1.4
2,354,329	+		PFLU_RS10685	0.73	+0.6
2,354,493	+				+2.2
2,354,533	+				-2.5
2,354,533	+				-0.3
2,354,534	-				-0.9
2,354,534	-				-2.1
2,354,585	+				-0.4
2,354,586	-				-0.8
2,354,594	-				+1.5
2,354,594	-				-0.8
2,354,594	-				-1.0
2,354,618	+				+0.1
2,354,620	+				+0.4
2,354,640	-				+1.7
2,354,700	+				+0.6
2,354,701	-				-1.1
2,354,723	-				-2.6
2,354,842	-				+0.3
2,354,855	-				-0.5
2,354,867	-				-0.7
2,354,891	-		PFLU_RS10690	0.11	-0.5
2,354,899	-		PFLU_RS10690	0.11	+2.0
2,354,902	-		PFLU_RS10690	0.11	-0.8
2,355,113	-		PFLU_RS10690	0.22	+1.2
2,355,113	-		PFLU_RS10690	0.22	-2.7
2,355,115	-		PFLU_RS10690	0.22	-1.0
2,355,122	+		PFLU_RS10690	0.22	-0.9
2,355,122	+		PFLU_RS10690	0.22	-0.2
2,355,135	+		PFLU_RS10690	0.23	+0.3
2,355,136	-		PFLU_RS10690	0.23	+1.2
2,355,136	-		PFLU_RS10690	0.23	+0.7
2,355,136	-		PFLU_RS10690	0.23	+1.5
2,355,136	-		PFLU_RS10690	0.23	-0.1
2,355,160	-		PFLU_RS10690	0.24	-1.8
2,355,165	+		PFLU_RS10690	0.25	-0.0
2,355,166	-		PFLU_RS10690	0.25	-0.1
2,355,167	+		PFLU_RS10690	0.25	+1.3
2,355,167	+		PFLU_RS10690	0.25	-0.5
2,355,167	+		PFLU_RS10690	0.25	+1.6
2,355,168	-		PFLU_RS10690	0.25	+0.7
2,355,168	-		PFLU_RS10690	0.25	-1.5
2,355,168	-		PFLU_RS10690	0.25	-0.2
2,355,168	-		PFLU_RS10690	0.25	-0.5
2,355,179	+		PFLU_RS10690	0.25	+1.1
2,355,238	+		PFLU_RS10690	0.28	+0.9
2,355,249	+		PFLU_RS10690	0.29	+0.2
2,355,249	+		PFLU_RS10690	0.29	+0.1
2,355,256	+		PFLU_RS10690	0.29	-0.2
2,355,257	-		PFLU_RS10690	0.29	-0.7
2,355,286	-		PFLU_RS10690	0.31	+1.1
2,355,338	+		PFLU_RS10690	0.34	+2.0
2,355,375	-		PFLU_RS10690	0.35	-1.5
2,355,439	-		PFLU_RS10690	0.39	+0.2
2,355,442	-		PFLU_RS10690	0.39	+0.6
2,355,449	+		PFLU_RS10690	0.39	-0.4
2,355,449	+		PFLU_RS10690	0.39	+1.2
2,355,450	-		PFLU_RS10690	0.39	-0.1
2,355,450	-		PFLU_RS10690	0.39	-0.3
2,355,450	-		PFLU_RS10690	0.39	+0.6
2,355,531	+		PFLU_RS10690	0.43	-0.3
2,355,532	-		PFLU_RS10690	0.43	+1.0
2,355,600	+		PFLU_RS10690	0.47	-0.2
2,355,601	-		PFLU_RS10690	0.47	+0.2
2,355,718	+		PFLU_RS10690	0.53	-0.5
2,355,718	+		PFLU_RS10690	0.53	+0.3
2,355,718	+		PFLU_RS10690	0.53	+0.5
2,355,731	+		PFLU_RS10690	0.54	-0.5
2,355,916	+		PFLU_RS10690	0.63	+2.1
2,355,924	+		PFLU_RS10690	0.64	+0.2
2,355,924	+		PFLU_RS10690	0.64	-3.2
2,355,924	+		PFLU_RS10690	0.64	+0.2
2,355,924	+		PFLU_RS10690	0.64	-1.0
2,355,925	-		PFLU_RS10690	0.64	-3.2
2,355,925	-		PFLU_RS10690	0.64	+1.3
2,355,925	-		PFLU_RS10690	0.64	+0.2
2,355,925	-		PFLU_RS10690	0.64	-0.9
2,355,925	-		PFLU_RS10690	0.64	-0.6
2,355,925	-		PFLU_RS10690	0.64	-0.9
2,355,925	-		PFLU_RS10690	0.64	-1.5
2,355,925	-		PFLU_RS10690	0.64	-2.8
2,355,972	+		PFLU_RS10690	0.66	+0.5
2,355,972	+		PFLU_RS10690	0.66	+0.8
2,355,973	-		PFLU_RS10690	0.66	+0.0
2,355,973	-		PFLU_RS10690	0.66	+1.0
2,356,108	+		PFLU_RS10690	0.73	-0.1
2,356,131	+		PFLU_RS10690	0.74	-0.0
2,356,131	+		PFLU_RS10690	0.74	-0.4
2,356,187	+		PFLU_RS10690	0.77	+0.8
2,356,188	-		PFLU_RS10690	0.77	-0.3
2,356,188	-		PFLU_RS10690	0.77	+0.9
2,356,206	+		PFLU_RS10690	0.78	-0.0
2,356,206	+		PFLU_RS10690	0.78	+0.4
2,356,207	-		PFLU_RS10690	0.78	-0.0
2,356,210	-		PFLU_RS10690	0.78	-3.1
2,356,370	+		PFLU_RS10690	0.86	+0.2
2,356,370	+		PFLU_RS10690	0.86	-1.7
2,356,371	-		PFLU_RS10690	0.87	-1.2
2,356,398	+		PFLU_RS10690	0.88	+1.0
2,356,418	+		PFLU_RS10690	0.89	-1.1
2,356,453	+				+0.2
2,356,454	-				-0.2
2,356,487	+				-0.9
2,356,488	-				-1.4
2,356,488	-				+1.5
2,356,488	-				+0.8
2,356,488	-				-2.3
2,356,488	-				+0.4
2,356,539	+				+1.2
2,356,555	+				-1.1
2,356,556	-				+0.9
2,356,556	-				+0.1
2,356,608	+				-2.1
2,356,608	+				+0.2
2,356,609	-				+0.2
2,356,609	-				-0.3
2,356,609	-				+1.9
2,356,670	+				-2.1
2,356,671	-				-0.1
2,356,691	+				+0.5
2,356,691	+				-2.5
2,356,701	+				-1.7
2,356,706	+				-1.8
2,356,707	-				+0.3
2,356,728	+				+0.3
2,356,729	-				-1.7
2,356,729	-				+1.3
2,356,735	+				-1.1
2,356,736	-				+0.7
2,356,779	-				+1.3
2,356,796	+				+0.6
2,356,797	-				+1.2
2,356,797	-				-1.9
2,356,804	+				+0.0
2,356,804	+				-0.7
2,356,805	-				+1.5
2,356,805	-				+0.8
2,356,805	-				-1.4
2,356,805	-				-0.9
2,356,805	-				-0.9
2,356,807	+				-0.1
2,356,807	+				-1.2
2,356,807	+				-0.7
2,356,807	+				+0.6
2,356,807	+				-0.8
2,356,808	-				-0.7
2,356,808	-				+0.3
2,356,808	-				+0.1
2,356,818	+				+0.4
2,356,819	-				+0.7
2,356,819	-				-1.1
2,356,819	-				-1.3
2,356,821	-				-0.8
2,356,980	-				+0.1
2,357,051	+				-0.9
2,357,051	+				+1.0
2,357,051	+				+0.7
2,357,051	+				+0.2
2,357,051	+				+0.9
2,357,051	+				+1.1
2,357,052	-				-0.2
2,357,052	-				+0.5
2,357,052	-				-2.2
2,357,052	-				-0.0
2,357,052	-				-2.4
2,357,052	-				-0.0
2,357,064	+				-1.5
2,357,098	+				-0.4
2,357,098	+				+0.0
2,357,099	-				-1.0
2,357,115	-				+0.7
2,357,115	-				+0.1
2,357,115	-				+1.2
2,357,148	+				+0.1
2,357,154	+				+0.4
2,357,183	-				+1.2
2,357,183	-				+2.0
2,357,184	+				-0.5
2,357,184	+				+0.2
2,357,184	+				+0.7
2,357,192	+				+0.8
2,357,192	+				-1.1
2,357,263	+		PFLU_RS30645	0.32	+0.5
2,357,263	+		PFLU_RS30645	0.32	-0.5
2,357,264	-		PFLU_RS30645	0.32	-1.9
2,357,264	-		PFLU_RS30645	0.32	+0.0
2,357,384	+				+1.1
2,357,384	+				+0.9
2,357,384	+				-0.7
2,357,385	-				+0.6
2,357,385	-				+0.1
2,357,385	-				-0.5
2,357,385	-				+0.4
2,357,431	-				-2.6
2,357,431	-				+0.3
2,357,485	+		PFLU_RS10695	0.10	-1.0