Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS10625

Experiment: NAG (C); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NAG (C); with MOPS
2,340,066	-		PFLU_RS10620	0.44	-0.6
2,340,160	+		PFLU_RS10620	0.50	-0.3
2,340,161	-		PFLU_RS10620	0.50	+0.5
2,340,161	-		PFLU_RS10620	0.50	+0.9
2,340,161	-		PFLU_RS10620	0.50	+1.2
2,340,161	-		PFLU_RS10620	0.50	+2.1
2,340,161	-		PFLU_RS10620	0.50	-0.8
2,340,161	-		PFLU_RS10620	0.50	+0.7
2,340,175	+		PFLU_RS10620	0.51	+0.8
2,340,175	+		PFLU_RS10620	0.51	+0.0
2,340,175	+		PFLU_RS10620	0.51	-0.6
2,340,175	+		PFLU_RS10620	0.51	-0.3
2,340,175	+		PFLU_RS10620	0.51	-0.8
2,340,176	-		PFLU_RS10620	0.51	-0.8
2,340,418	+		PFLU_RS10620	0.66	-0.2
2,340,418	+		PFLU_RS10620	0.66	-0.6
2,340,418	+		PFLU_RS10620	0.66	+0.5
2,340,418	+		PFLU_RS10620	0.66	-0.4
2,340,419	-		PFLU_RS10620	0.66	-1.5
2,340,419	-		PFLU_RS10620	0.66	-0.8
2,340,529	+		PFLU_RS10620	0.73	+2.5
2,340,529	+		PFLU_RS10620	0.73	+2.5
2,340,529	+		PFLU_RS10620	0.73	-1.2
2,340,529	+		PFLU_RS10620	0.73	-2.1
2,340,530	-		PFLU_RS10620	0.73	+1.3
2,340,530	-		PFLU_RS10620	0.73	+0.0
2,340,530	-		PFLU_RS10620	0.73	+0.4
2,340,530	-		PFLU_RS10620	0.73	-0.6
2,340,530	-		PFLU_RS10620	0.73	+0.1
2,340,530	-		PFLU_RS10620	0.73	+1.4
2,340,530	-		PFLU_RS10620	0.73	+0.6
2,340,530	-		PFLU_RS10620	0.73	+1.5
2,340,530	-		PFLU_RS10620	0.73	+0.3
2,340,530	-		PFLU_RS10620	0.73	-1.5
2,340,530	-		PFLU_RS10620	0.73	-0.2
2,340,530	-		PFLU_RS10620	0.73	-0.9
2,340,530	-		PFLU_RS10620	0.73	-0.3
2,340,530	-		PFLU_RS10620	0.73	+0.8
2,340,530	-		PFLU_RS10620	0.73	+0.5
2,340,530	-		PFLU_RS10620	0.73	-0.1
2,340,625	+		PFLU_RS10620	0.79	+0.9
2,340,625	+		PFLU_RS10620	0.79	+1.2
2,340,626	-		PFLU_RS10620	0.79	+0.5
2,340,626	-		PFLU_RS10620	0.79	-0.4
2,340,671	+		PFLU_RS10620	0.81	-0.2
2,340,671	+		PFLU_RS10620	0.81	-0.3
2,340,671	+		PFLU_RS10620	0.81	-0.0
2,340,672	-		PFLU_RS10620	0.82	-0.2
2,340,672	-		PFLU_RS10620	0.82	+1.8
2,340,672	-		PFLU_RS10620	0.82	+0.5
2,340,691	+		PFLU_RS10620	0.83	+0.5
2,340,691	+		PFLU_RS10620	0.83	-0.1
2,340,691	+		PFLU_RS10620	0.83	+0.6
2,340,691	+		PFLU_RS10620	0.83	+0.3
2,340,691	+		PFLU_RS10620	0.83	+1.7
2,340,691	+		PFLU_RS10620	0.83	-1.4
2,340,691	+		PFLU_RS10620	0.83	-0.8
2,340,691	+		PFLU_RS10620	0.83	-1.3
2,340,692	-		PFLU_RS10620	0.83	+1.7
2,340,692	-		PFLU_RS10620	0.83	+0.9
2,340,692	-		PFLU_RS10620	0.83	+1.9
2,340,692	-		PFLU_RS10620	0.83	+1.0
2,340,692	-		PFLU_RS10620	0.83	-1.7
2,340,692	-		PFLU_RS10620	0.83	+1.1
2,340,692	-		PFLU_RS10620	0.83	-0.6
2,340,692	-		PFLU_RS10620	0.83	-0.2
2,340,695	+		PFLU_RS10620	0.83	+0.6
2,340,865	+				+0.5
2,340,866	-				+0.0
2,340,992	+				+2.5
2,340,992	+				+1.2
2,340,992	+				+0.1
2,340,992	+				-0.9
2,340,992	+				-0.3
2,340,993	-				+0.2
2,340,993	-				+1.0
2,340,993	-				-2.0
2,340,993	-				-0.7
2,340,993	-				+0.1
2,340,993	-				-0.3
2,340,996	+				+1.6
2,340,996	+				+0.9
2,340,996	+				+1.9
2,340,997	-				-1.8
2,340,997	-				+1.3
2,341,034	+				+0.7
2,341,081	+				-1.1
2,341,081	+				-0.0
2,341,081	+				+0.3
2,341,082	-				-1.6
2,341,082	-				+1.1
2,341,082	-				-1.0
2,341,082	-				-0.1
2,341,082	-				-0.5
2,341,153	+				+0.5
2,341,154	-				-0.6
2,341,211	+		PFLU_RS10625	0.11	+0.6
2,341,212	-		PFLU_RS10625	0.11	-1.1
2,341,212	-		PFLU_RS10625	0.11	-0.8
2,341,344	+		PFLU_RS10625	0.19	+0.5
2,341,446	+		PFLU_RS10625	0.25	-1.5
2,341,446	+		PFLU_RS10625	0.25	+0.0
2,341,446	+		PFLU_RS10625	0.25	-0.3
2,341,446	+		PFLU_RS10625	0.25	-0.6
2,341,447	-		PFLU_RS10625	0.25	+0.5
2,341,447	-		PFLU_RS10625	0.25	-0.5
2,341,447	-		PFLU_RS10625	0.25	-0.3
2,341,602	+		PFLU_RS10625	0.34	+1.8
2,341,602	+		PFLU_RS10625	0.34	-0.5
2,341,602	+		PFLU_RS10625	0.34	+0.8
2,341,602	+		PFLU_RS10625	0.34	+0.7
2,341,603	-		PFLU_RS10625	0.34	+0.7
2,341,603	-		PFLU_RS10625	0.34	+0.0
2,341,692	+		PFLU_RS10625	0.40	+0.8
2,341,693	-		PFLU_RS10625	0.40	+0.2
2,341,728	-		PFLU_RS10625	0.42	+0.5
2,341,728	-		PFLU_RS10625	0.42	-2.1
2,341,774	-		PFLU_RS10625	0.45	+0.7
2,341,774	-		PFLU_RS10625	0.45	+0.4
2,341,774	-		PFLU_RS10625	0.45	+0.2
2,341,824	-		PFLU_RS10625	0.48	+0.6
2,341,836	-		PFLU_RS10625	0.49	+1.6
2,342,124	+		PFLU_RS10625	0.66	+0.8
2,342,124	+		PFLU_RS10625	0.66	-1.0
2,342,125	-		PFLU_RS10625	0.66	+0.4
2,342,388	+		PFLU_RS10625	0.82	+1.5
2,342,388	+		PFLU_RS10625	0.82	-1.1
2,342,388	+		PFLU_RS10625	0.82	+1.4
2,342,388	+		PFLU_RS10625	0.82	-1.8
2,342,388	+		PFLU_RS10625	0.82	+0.5
2,342,388	+		PFLU_RS10625	0.82	+0.8
2,342,388	+		PFLU_RS10625	0.82	+0.9
2,342,388	+		PFLU_RS10625	0.82	+1.1
2,342,388	+		PFLU_RS10625	0.82	+0.5
2,342,388	+		PFLU_RS10625	0.82	+0.9
2,342,388	+		PFLU_RS10625	0.82	+1.0
2,342,388	+		PFLU_RS10625	0.82	-0.6
2,342,388	+		PFLU_RS10625	0.82	+0.3
2,342,388	+		PFLU_RS10625	0.82	-2.4
2,342,388	+		PFLU_RS10625	0.82	+1.5
2,342,388	+		PFLU_RS10625	0.82	+1.6
2,342,388	+		PFLU_RS10625	0.82	+0.9
2,342,389	-		PFLU_RS10625	0.82	+1.5
2,342,389	-		PFLU_RS10625	0.82	+0.9
2,342,389	-		PFLU_RS10625	0.82	+1.3
2,342,389	-		PFLU_RS10625	0.82	-0.7
2,342,389	-		PFLU_RS10625	0.82	-0.8
2,342,389	-		PFLU_RS10625	0.82	+0.9
2,342,439	+		PFLU_RS10625	0.85	-0.3
2,342,440	-		PFLU_RS10625	0.85	-2.3
2,342,440	-		PFLU_RS10625	0.85	-0.9
2,342,440	-		PFLU_RS10625	0.85	+0.6
2,342,550	+				+1.8
2,342,551	-				-0.7
2,342,551	-				-0.2
2,342,551	-				-2.3
2,342,655	+				+0.3
2,342,655	+				-1.4
2,342,655	+				+0.7
2,342,655	+				+0.2
2,342,655	+				+1.2
2,342,655	+				-0.5
2,342,655	+				-2.8
2,342,655	+				-2.4
2,342,655	+				+0.6
2,342,655	+				+0.7
2,342,655	+				-0.7
2,342,655	+				-2.0
2,342,655	+				+0.2
2,342,655	+				-0.2
2,342,656	-				-2.4
2,342,656	-				-0.3
2,342,656	-				-0.6
2,342,656	-				-1.4
2,342,656	-				-0.8
2,342,656	-				-0.4
2,342,656	-				-0.2
2,342,656	-				-0.4
2,342,720	+				+0.2
2,342,720	+				+1.5
2,342,721	-				+1.7
2,342,721	-				+0.3
2,342,721	-				-0.5
2,342,727	+				-0.0
2,342,837	+				-0.9
2,342,838	-				+0.1
2,342,838	-				+1.2
2,343,305	+		PFLU_RS10630	0.55	+0.1
2,343,305	+		PFLU_RS10630	0.55	-0.9
2,343,306	-		PFLU_RS10630	0.55	+1.6
2,343,306	-		PFLU_RS10630	0.55	+1.0
2,343,320	+		PFLU_RS10630	0.57	-0.9
2,343,321	-		PFLU_RS10630	0.57	-1.6
2,343,321	-		PFLU_RS10630	0.57	+0.3
2,343,384	-		PFLU_RS10630	0.64	+0.7
2,343,619	+				-0.1
2,343,619	+				+0.2
2,343,619	+				+1.1
2,343,619	+				-0.5
2,343,619	+				+0.2
2,343,619	+				+0.4
2,343,619	+				-1.1
2,343,619	+				+1.5
2,343,619	+				-0.3
2,343,619	+				-0.2
2,343,619	+				+1.0
2,343,619	+				+0.0
2,343,620	-				+0.1
2,343,620	-				+0.1
2,343,620	-				+0.8
2,343,620	-				+0.5
2,343,620	-				+0.2
2,343,620	-				-0.3
2,343,620	-				-0.2
2,343,620	-				-1.1
2,343,620	-				-1.6
2,343,620	-				+0.2
2,343,650	+				+0.3
2,343,650	+				+2.4
2,343,650	+				+1.4
2,343,650	+				+0.2
2,343,650	+				+0.6
2,343,651	-				-1.1
2,343,651	-				-1.8
2,343,651	-				+0.5