Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS08060

Experiment: NAG (C); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NAG (C); with MOPS
1,795,561	+		PFLU_RS08055	0.48	+0.3
1,795,740	+		PFLU_RS08055	0.60	-0.4
1,795,740	+		PFLU_RS08055	0.60	+1.4
1,795,740	+		PFLU_RS08055	0.60	+2.2
1,795,740	+		PFLU_RS08055	0.60	+0.5
1,795,741	-		PFLU_RS08055	0.60	+2.0
1,795,741	-		PFLU_RS08055	0.60	+0.1
1,795,741	-		PFLU_RS08055	0.60	+1.0
1,795,741	-		PFLU_RS08055	0.60	-1.2
1,795,741	-		PFLU_RS08055	0.60	-3.7
1,795,741	-		PFLU_RS08055	0.60	-0.0
1,795,741	-		PFLU_RS08055	0.60	+0.3
1,795,761	+		PFLU_RS08055	0.61	+1.0
1,795,761	+		PFLU_RS08055	0.61	-0.8
1,795,762	-		PFLU_RS08055	0.61	+0.3
1,795,762	-		PFLU_RS08055	0.61	+0.3
1,795,762	-		PFLU_RS08055	0.61	-0.8
1,795,767	+		PFLU_RS08055	0.62	-1.9
1,795,767	+		PFLU_RS08055	0.62	+0.3
1,795,767	+		PFLU_RS08055	0.62	+1.6
1,795,768	-		PFLU_RS08055	0.62	-0.0
1,795,768	-		PFLU_RS08055	0.62	-0.1
1,795,768	-		PFLU_RS08055	0.62	+0.4
1,795,768	-		PFLU_RS08055	0.62	-0.2
1,795,768	-		PFLU_RS08055	0.62	-0.3
1,795,768	-		PFLU_RS08055	0.62	+0.5
1,795,768	-		PFLU_RS08055	0.62	+0.2
1,795,788	+		PFLU_RS08055	0.63	+1.1
1,795,788	+		PFLU_RS08055	0.63	-0.6
1,795,788	+		PFLU_RS08055	0.63	-0.7
1,795,788	+		PFLU_RS08055	0.63	-2.1
1,795,789	-		PFLU_RS08055	0.63	+1.3
1,795,789	-		PFLU_RS08055	0.63	-1.6
1,795,789	-		PFLU_RS08055	0.63	+0.8
1,795,789	-		PFLU_RS08055	0.63	-0.2
1,795,794	+		PFLU_RS08055	0.64	+0.8
1,795,795	-		PFLU_RS08055	0.64	-0.6
1,795,795	-		PFLU_RS08055	0.64	+1.8
1,795,795	-		PFLU_RS08055	0.64	+1.0
1,795,881	+		PFLU_RS08055	0.69	+0.6
1,795,881	+		PFLU_RS08055	0.69	+1.1
1,795,881	+		PFLU_RS08055	0.69	-0.6
1,795,881	+		PFLU_RS08055	0.69	+0.2
1,795,881	+		PFLU_RS08055	0.69	-1.4
1,795,881	+		PFLU_RS08055	0.69	+0.4
1,795,881	+		PFLU_RS08055	0.69	+1.9
1,795,881	+		PFLU_RS08055	0.69	-0.6
1,795,881	+		PFLU_RS08055	0.69	+0.2
1,795,881	+		PFLU_RS08055	0.69	-0.6
1,795,881	+		PFLU_RS08055	0.69	+1.0
1,795,882	-		PFLU_RS08055	0.69	+0.8
1,795,882	-		PFLU_RS08055	0.69	-0.5
1,795,882	-		PFLU_RS08055	0.69	+0.0
1,795,882	-		PFLU_RS08055	0.69	-1.9
1,795,882	-		PFLU_RS08055	0.69	-2.8
1,795,882	-		PFLU_RS08055	0.69	-0.3
1,795,882	-		PFLU_RS08055	0.69	-2.5
1,795,882	-		PFLU_RS08055	0.69	-0.3
1,795,882	-		PFLU_RS08055	0.69	+0.9
1,795,882	-		PFLU_RS08055	0.69	+0.1
1,795,882	-		PFLU_RS08055	0.69	-1.6
1,795,882	-		PFLU_RS08055	0.69	-0.4
1,795,882	-		PFLU_RS08055	0.69	+0.9
1,796,019	+		PFLU_RS08055	0.78	-0.4
1,796,019	+		PFLU_RS08055	0.78	+0.3
1,796,020	-		PFLU_RS08055	0.78	-0.9
1,796,024	+		PFLU_RS08055	0.79	+0.8
1,796,024	+		PFLU_RS08055	0.79	-0.6
1,796,025	-		PFLU_RS08055	0.79	-0.0
1,796,037	+		PFLU_RS08055	0.80	-1.0
1,796,037	+		PFLU_RS08055	0.80	+1.2
1,796,037	+		PFLU_RS08055	0.80	+0.7
1,796,037	+		PFLU_RS08055	0.80	+0.2
1,796,037	+		PFLU_RS08055	0.80	-1.2
1,796,037	+		PFLU_RS08055	0.80	-0.2
1,796,037	+		PFLU_RS08055	0.80	-1.0
1,796,037	+		PFLU_RS08055	0.80	+1.5
1,796,037	+		PFLU_RS08055	0.80	-0.8
1,796,037	+		PFLU_RS08055	0.80	-0.7
1,796,037	+		PFLU_RS08055	0.80	-0.1
1,796,037	+		PFLU_RS08055	0.80	-1.2
1,796,037	+		PFLU_RS08055	0.80	-0.0
1,796,037	+		PFLU_RS08055	0.80	+0.1
1,796,038	-		PFLU_RS08055	0.80	+1.0
1,796,038	-		PFLU_RS08055	0.80	+0.3
1,796,038	-		PFLU_RS08055	0.80	-0.1
1,796,038	-		PFLU_RS08055	0.80	-2.0
1,796,038	-		PFLU_RS08055	0.80	+0.0
1,796,038	-		PFLU_RS08055	0.80	-2.2
1,796,038	-		PFLU_RS08055	0.80	+0.7
1,796,038	-		PFLU_RS08055	0.80	-0.1
1,796,038	-		PFLU_RS08055	0.80	+0.5
1,796,038	-		PFLU_RS08055	0.80	-0.5
1,796,038	-		PFLU_RS08055	0.80	+0.9
1,796,038	-		PFLU_RS08055	0.80	-0.1
1,796,038	-		PFLU_RS08055	0.80	-0.2
1,796,109	+		PFLU_RS08055	0.84	-0.3
1,796,109	+		PFLU_RS08055	0.84	+1.9
1,796,109	+		PFLU_RS08055	0.84	+0.2
1,796,109	+		PFLU_RS08055	0.84	-3.3
1,796,109	+		PFLU_RS08055	0.84	-0.6
1,796,110	-		PFLU_RS08055	0.84	+1.1
1,796,110	-		PFLU_RS08055	0.84	+0.5
1,796,110	-		PFLU_RS08055	0.84	+0.5
1,796,110	-		PFLU_RS08055	0.84	+0.1
1,796,110	-		PFLU_RS08055	0.84	+0.5
1,796,110	-		PFLU_RS08055	0.84	+0.5
1,796,110	-		PFLU_RS08055	0.84	+1.5
1,796,110	-		PFLU_RS08055	0.84	+1.1
1,796,110	-		PFLU_RS08055	0.84	-0.8
1,796,110	-		PFLU_RS08055	0.84	+0.2
1,796,110	-		PFLU_RS08055	0.84	+0.8
1,796,122	-		PFLU_RS08055	0.85	-0.4
1,796,122	-		PFLU_RS08055	0.85	-1.4
1,796,196	+				+0.3
1,796,196	+				-0.6
1,796,196	+				+0.7
1,796,196	+				-2.1
1,796,196	+				-1.7
1,796,196	+				+1.2
1,796,196	+				+1.0
1,796,196	+				-0.4
1,796,196	+				-1.8
1,796,196	+				+0.8
1,796,196	+				-0.0
1,796,196	+				-0.6
1,796,196	+				+0.2
1,796,196	+				+0.9
1,796,196	+				-1.1
1,796,196	+				+1.0
1,796,196	+				+2.6
1,796,196	+				+0.8
1,796,196	+				+1.3
1,796,196	+				+1.2
1,796,196	+				+1.4
1,796,197	-				-1.0
1,796,197	-				-0.9
1,796,197	-				-0.1
1,796,197	-				+1.3
1,796,197	-				-2.0
1,796,197	-				-1.2
1,796,197	-				+0.3
1,796,197	-				-1.2
1,796,197	-				+0.9
1,796,197	-				-1.0
1,796,197	-				+0.3
1,796,197	-				-0.1
1,796,197	-				+0.6
1,796,197	-				+1.9
1,796,197	-				-0.6
1,796,247	+				+0.1
1,796,247	+				+0.1
1,796,247	+				-0.7
1,796,247	+				-0.3
1,796,247	+				+0.3
1,796,248	-				-1.2
1,796,248	-				-0.8
1,796,248	-				-0.8
1,796,248	-				+1.2
1,796,248	-				-1.0
1,796,248	-				-1.1
1,796,250	+				+0.6
1,796,250	+				-1.0
1,796,251	-				+1.6
1,796,251	-				+1.9
1,796,251	-				+0.8
1,796,259	+				-0.2
1,796,259	+				+0.1
1,796,259	+				-1.0
1,796,260	-				+1.3
1,796,260	-				+0.1
1,796,260	-				-0.9
1,796,260	-				-0.8
1,796,260	-				+0.2
1,796,260	-				+0.5
1,796,344	-				-2.3
1,796,359	-				-0.4
1,796,401	+				-1.3
1,796,401	+				-0.1
1,796,401	+				-0.0
1,796,401	+				+1.7
1,796,401	+				-0.9
1,796,401	+				+0.3
1,796,401	+				+1.0
1,796,401	+				-0.6
1,796,402	-				-1.8
1,796,402	-				+1.4
1,796,402	-				+0.9
1,796,402	-				-0.2
1,796,403	+				-0.9
1,796,403	+				+0.9
1,796,403	+				-1.7
1,796,403	+				-0.8
1,796,403	+				-0.4
1,796,403	+				-1.6
1,796,404	-				-1.8
1,796,404	-				+1.1
1,796,404	-				+0.6
1,796,415	+				-0.1
1,796,416	-				-1.3
1,796,469	+				+0.3
1,796,470	-				-2.4
1,796,475	+				+0.5
1,796,475	+				+0.2
1,796,475	+				-2.8
1,796,475	+				+0.4
1,796,475	+				-1.7
1,796,475	+				-0.5
1,796,476	-				-1.5
1,796,476	-				+0.1
1,796,476	-				-0.0
1,796,586	-		PFLU_RS08060	0.23	-0.2
1,796,658	+		PFLU_RS08060	0.33	-1.6
1,796,916	+		PFLU_RS08060	0.68	-0.2
1,796,916	+		PFLU_RS08060	0.68	-1.0
1,796,916	+		PFLU_RS08060	0.68	+0.4
1,796,917	-		PFLU_RS08060	0.68	+0.5
1,796,917	-		PFLU_RS08060	0.68	-1.0
1,796,994	+		PFLU_RS08060	0.78	-3.3
1,796,994	+		PFLU_RS08060	0.78	-2.2
1,797,057	+		PFLU_RS08060	0.87	-0.0
1,797,144	+				+2.3
1,797,145	-				-1.0
1,797,145	-				+1.3
1,797,154	+				+0.3
1,797,154	+				-0.1
1,797,154	+				-1.0
1,797,154	+				-0.4
1,797,154	+				+0.6
1,797,154	+				-1.9
1,797,155	-				-0.6
1,797,155	-				+0.3
1,797,155	-				-0.6
1,797,155	-				-0.8
1,797,155	-				+1.3
1,797,155	-				-0.3
1,797,155	-				-0.2
1,797,155	-				-2.7
1,797,155	-				-0.0
1,797,365	+				+1.5
1,797,366	-				-1.4
1,797,434	+		PFLU_RS08065	0.15	-3.3
1,797,436	+		PFLU_RS08065	0.15	-2.8
1,797,436	+		PFLU_RS08065	0.15	-2.4
1,797,436	+		PFLU_RS08065	0.15	-1.7
1,797,436	+		PFLU_RS08065	0.15	-1.9
1,797,436	+		PFLU_RS08065	0.15	-3.0
1,797,436	+		PFLU_RS08065	0.15	-3.6
1,797,436	+		PFLU_RS08065	0.15	-3.0
1,797,436	+		PFLU_RS08065	0.15	-3.0
1,797,437	-		PFLU_RS08065	0.15	-2.6
1,797,437	-		PFLU_RS08065	0.15	-3.4
1,797,437	-		PFLU_RS08065	0.15	-3.0
1,797,437	-		PFLU_RS08065	0.15	+0.2
1,797,437	-		PFLU_RS08065	0.15	-3.9
1,797,442	+		PFLU_RS08065	0.16	-2.0
1,797,442	+		PFLU_RS08065	0.16	-1.6
1,797,442	+		PFLU_RS08065	0.16	-1.7
1,797,442	+		PFLU_RS08065	0.16	-3.3
1,797,443	-		PFLU_RS08065	0.16	-2.1
1,797,443	-		PFLU_RS08065	0.16	-3.7
1,797,443	-		PFLU_RS08065	0.16	-3.3
1,797,443	-		PFLU_RS08065	0.16	-0.7
1,797,443	-		PFLU_RS08065	0.16	-3.2
1,797,443	-		PFLU_RS08065	0.16	-3.2
1,797,443	-		PFLU_RS08065	0.16	-1.8
1,797,443	-		PFLU_RS08065	0.16	-2.9
1,797,443	-		PFLU_RS08065	0.16	-3.3
1,797,671	+		PFLU_RS08065	0.50	-2.0
1,797,672	-		PFLU_RS08065	0.50	-3.6
1,797,772	+		PFLU_RS08065	0.65	-2.9
1,797,968	+				-3.4