Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS04960

Experiment: NAG (C); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NAG (C); with MOPS
1,109,469	+				+0.8
1,109,470	-				+0.2
1,109,470	-				-0.9
1,109,470	-				-0.1
1,109,470	-				-0.1
1,109,470	-				+0.6
1,109,470	-				-0.9
1,109,482	-				-0.4
1,109,503	+		PFLU_RS04955	0.11	+0.4
1,109,504	-		PFLU_RS04955	0.11	-0.2
1,109,548	+		PFLU_RS04955	0.18	+1.1
1,109,548	+		PFLU_RS04955	0.18	-3.4
1,109,549	-		PFLU_RS04955	0.18	-0.3
1,109,549	-		PFLU_RS04955	0.18	-0.5
1,109,549	-		PFLU_RS04955	0.18	+0.1
1,109,549	-		PFLU_RS04955	0.18	+0.2
1,109,634	+		PFLU_RS04955	0.31	+0.6
1,109,634	+		PFLU_RS04955	0.31	-2.3
1,109,634	+		PFLU_RS04955	0.31	+0.8
1,109,635	-		PFLU_RS04955	0.31	+1.0
1,109,635	-		PFLU_RS04955	0.31	+1.8
1,109,666	-		PFLU_RS04955	0.36	+0.2
1,109,666	-		PFLU_RS04955	0.36	-0.1
1,109,708	+		PFLU_RS04955	0.42	-2.4
1,109,708	+		PFLU_RS04955	0.42	+0.3
1,109,709	-		PFLU_RS04955	0.42	+0.8
1,109,709	-		PFLU_RS04955	0.42	+0.3
1,109,727	+		PFLU_RS04955	0.45	+0.4
1,109,779	-		PFLU_RS04955	0.53	+1.7
1,109,884	+		PFLU_RS04955	0.69	+1.1
1,109,885	-		PFLU_RS04955	0.69	+1.0
1,110,005	-		PFLU_RS04955	0.88	-0.2
1,110,005	-		PFLU_RS04955	0.88	+0.3
1,110,036	+				+0.9
1,110,037	-				-1.0
1,110,156	-				-0.3
1,110,186	+				-0.8
1,110,187	-				+0.1
1,110,226	-				+1.7
1,110,237	+				-1.3
1,110,237	+				+1.4
1,110,237	+				+0.2
1,110,237	+				+0.4
1,110,237	+				+1.3
1,110,237	+				+0.5
1,110,237	+				-0.8
1,110,237	+				+0.1
1,110,238	-				+0.8
1,110,238	-				-0.4
1,110,238	-				+1.6
1,110,238	-				+0.7
1,110,238	-				+1.0
1,110,260	+				+1.4
1,110,261	-				-1.5
1,110,274	-				+0.4
1,110,279	+				-1.1
1,110,279	+				+0.7
1,110,279	+				-0.4
1,110,279	+				+0.9
1,110,279	+				+0.7
1,110,279	+				+0.1
1,110,280	-				-0.7
1,110,303	+				+0.1
1,110,304	-				+1.4
1,110,304	-				-0.8
1,110,377	+				-2.4
1,110,377	+				+0.8
1,110,377	+				+0.2
1,110,377	+				+2.0
1,110,378	-				+0.4
1,110,378	-				-1.4
1,110,378	-				+1.0
1,110,378	-				-0.2
1,110,477	+				+1.9
1,110,477	+				-0.4
1,110,477	+				-2.4
1,110,742	+		PFLU_RS04960	0.30	+1.0
1,110,743	-		PFLU_RS04960	0.30	-0.7
1,110,806	+		PFLU_RS04960	0.36	+0.4
1,110,806	+		PFLU_RS04960	0.36	+1.3
1,110,806	+		PFLU_RS04960	0.36	-0.3
1,110,806	+		PFLU_RS04960	0.36	+1.9
1,110,806	+		PFLU_RS04960	0.36	+1.9
1,110,806	+		PFLU_RS04960	0.36	-0.2
1,110,807	-		PFLU_RS04960	0.36	+1.4
1,110,807	-		PFLU_RS04960	0.36	+0.5
1,110,807	-		PFLU_RS04960	0.36	+0.1
1,110,809	+		PFLU_RS04960	0.37	+0.0
1,110,809	+		PFLU_RS04960	0.37	+0.7
1,110,809	+		PFLU_RS04960	0.37	+1.4
1,110,809	+		PFLU_RS04960	0.37	+0.2
1,110,810	-		PFLU_RS04960	0.37	-1.1
1,110,810	-		PFLU_RS04960	0.37	-0.6
1,110,810	-		PFLU_RS04960	0.37	+0.7
1,110,810	-		PFLU_RS04960	0.37	+0.5
1,110,832	-		PFLU_RS04960	0.39	+0.6
1,110,926	+		PFLU_RS04960	0.48	-0.5
1,110,926	+		PFLU_RS04960	0.48	-1.9
1,110,927	-		PFLU_RS04960	0.48	+0.8
1,110,950	+		PFLU_RS04960	0.50	+1.8
1,110,950	+		PFLU_RS04960	0.50	+0.1
1,110,951	-		PFLU_RS04960	0.50	+0.0
1,110,951	-		PFLU_RS04960	0.50	+0.6
1,110,951	-		PFLU_RS04960	0.50	-0.0
1,110,951	-		PFLU_RS04960	0.50	-0.4
1,110,951	-		PFLU_RS04960	0.50	+0.7
1,111,017	+		PFLU_RS04960	0.57	+1.5
1,111,017	+		PFLU_RS04960	0.57	+0.3
1,111,018	-		PFLU_RS04960	0.57	+1.0
1,111,018	-		PFLU_RS04960	0.57	+1.8
1,111,079	+		PFLU_RS04960	0.63	+0.2
1,111,080	-		PFLU_RS04960	0.63	-1.3
1,111,323	+		PFLU_RS04960	0.86	-0.2
1,111,323	+		PFLU_RS04960	0.86	-1.9
1,111,324	-		PFLU_RS04960	0.87	+1.1
1,111,345	+		PFLU_RS04960	0.89	-0.3
1,111,349	+		PFLU_RS04960	0.89	+0.1
1,111,349	+		PFLU_RS04960	0.89	-0.1
1,111,349	+		PFLU_RS04960	0.89	+0.1
1,111,349	+		PFLU_RS04960	0.89	+0.4
1,111,349	+		PFLU_RS04960	0.89	+0.2
1,111,350	-		PFLU_RS04960	0.89	+0.8
1,111,350	-		PFLU_RS04960	0.89	+0.0
1,111,350	-		PFLU_RS04960	0.89	+0.5
1,111,350	-		PFLU_RS04960	0.89	-0.8
1,111,442	+				+1.1
1,111,646	+				-0.9
1,111,646	+				-1.6
1,111,647	-				+0.9
1,111,647	-				-0.2
1,111,690	+		PFLU_RS04965	0.13	-0.6
1,111,690	+		PFLU_RS04965	0.13	+0.9
1,111,691	-		PFLU_RS04965	0.13	+2.0
1,111,691	-		PFLU_RS04965	0.13	-2.8
1,111,754	+		PFLU_RS04965	0.19	+1.3
1,111,754	+		PFLU_RS04965	0.19	-0.4
1,111,755	-		PFLU_RS04965	0.19	+1.4
1,111,772	+		PFLU_RS04965	0.20	+0.6
1,111,772	+		PFLU_RS04965	0.20	-0.0
1,111,772	+		PFLU_RS04965	0.20	+0.6
1,111,772	+		PFLU_RS04965	0.20	+0.5
1,111,772	+		PFLU_RS04965	0.20	+1.0
1,111,772	+		PFLU_RS04965	0.20	-1.2
1,111,772	+		PFLU_RS04965	0.20	+1.6
1,111,773	-		PFLU_RS04965	0.20	-2.6
1,111,773	-		PFLU_RS04965	0.20	-2.0
1,111,822	+		PFLU_RS04965	0.24	+1.3
1,111,913	+		PFLU_RS04965	0.32	+1.2
1,111,913	+		PFLU_RS04965	0.32	+0.0
1,111,913	+		PFLU_RS04965	0.32	-1.2
1,111,913	+		PFLU_RS04965	0.32	+1.1
1,111,913	+		PFLU_RS04965	0.32	-1.8
1,111,913	+		PFLU_RS04965	0.32	-1.0
1,111,913	+		PFLU_RS04965	0.32	+0.7
1,111,913	+		PFLU_RS04965	0.32	-1.3
1,111,913	+		PFLU_RS04965	0.32	+0.4
1,111,913	+		PFLU_RS04965	0.32	+0.2
1,111,913	+		PFLU_RS04965	0.32	-0.0
1,111,913	+		PFLU_RS04965	0.32	+0.5
1,111,913	+		PFLU_RS04965	0.32	+2.0
1,111,913	+		PFLU_RS04965	0.32	-1.3
1,111,914	-		PFLU_RS04965	0.32	+1.2
1,111,914	-		PFLU_RS04965	0.32	+2.1
1,111,914	-		PFLU_RS04965	0.32	+0.4
1,111,914	-		PFLU_RS04965	0.32	+1.3
1,111,914	-		PFLU_RS04965	0.32	-0.1
1,111,914	-		PFLU_RS04965	0.32	-0.5
1,111,914	-		PFLU_RS04965	0.32	+1.0
1,111,914	-		PFLU_RS04965	0.32	+0.3
1,111,914	-		PFLU_RS04965	0.32	+0.4
1,111,914	-		PFLU_RS04965	0.32	-1.5
1,111,914	-		PFLU_RS04965	0.32	+1.2
1,111,914	-		PFLU_RS04965	0.32	-0.4
1,111,914	-		PFLU_RS04965	0.32	+0.4
1,111,914	-		PFLU_RS04965	0.32	+1.4
1,111,914	-		PFLU_RS04965	0.32	+0.3
1,111,914	-		PFLU_RS04965	0.32	-1.1
1,111,914	-		PFLU_RS04965	0.32	-1.0
1,111,914	-		PFLU_RS04965	0.32	+1.2
1,111,914	-		PFLU_RS04965	0.32	+1.0
1,111,914	-		PFLU_RS04965	0.32	+0.6
1,112,169	+		PFLU_RS04965	0.54	-1.4
1,112,301	+		PFLU_RS04965	0.65	+0.0
1,112,301	+		PFLU_RS04965	0.65	+1.3
1,112,301	+		PFLU_RS04965	0.65	+0.8
1,112,301	+		PFLU_RS04965	0.65	-0.4
1,112,302	-		PFLU_RS04965	0.65	-0.6
1,112,305	+		PFLU_RS04965	0.65	+1.0
1,112,305	+		PFLU_RS04965	0.65	-0.1
1,112,346	-		PFLU_RS04965	0.69	+0.5
1,112,346	-		PFLU_RS04965	0.69	+0.6
1,112,346	-		PFLU_RS04965	0.69	+1.0
1,112,346	-		PFLU_RS04965	0.69	+0.7
1,112,359	+		PFLU_RS04965	0.70	+0.0
1,112,360	-		PFLU_RS04965	0.70	-0.2
1,112,360	-		PFLU_RS04965	0.70	+0.9