Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS04535

Experiment: NAG (C); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NAG (C); with MOPS
1,012,293	+		PFLU_RS04520	0.81	-0.6
1,012,294	-		PFLU_RS04520	0.81	+0.1
1,012,294	-		PFLU_RS04520	0.81	-0.8
1,012,481	-				-2.8
1,012,560	+		PFLU_RS04525	0.46	-1.4
1,012,560	+		PFLU_RS04525	0.46	+0.9
1,012,560	+		PFLU_RS04525	0.46	+1.9
1,012,560	+		PFLU_RS04525	0.46	-3.4
1,012,560	+		PFLU_RS04525	0.46	+1.4
1,012,560	+		PFLU_RS04525	0.46	+1.8
1,012,560	+		PFLU_RS04525	0.46	-1.8
1,012,560	+		PFLU_RS04525	0.46	+0.9
1,012,561	-		PFLU_RS04525	0.47	-1.0
1,012,561	-		PFLU_RS04525	0.47	+1.2
1,012,561	-		PFLU_RS04525	0.47	-0.1
1,012,561	-		PFLU_RS04525	0.47	-1.1
1,012,561	-		PFLU_RS04525	0.47	-2.2
1,012,641	+		PFLU_RS04525	0.85	-0.0
1,012,641	+		PFLU_RS04525	0.85	+1.6
1,012,641	+		PFLU_RS04525	0.85	+1.4
1,012,683	+				+0.4
1,012,684	-				-0.4
1,012,714	+				+0.7
1,012,738	+				+1.2
1,012,739	-				-0.9
1,012,739	-				-1.7
1,012,739	-				-1.0
1,012,739	-				+0.5
1,012,750	+				-0.1
1,012,750	+				+1.5
1,012,750	+				+1.6
1,012,750	+				-0.2
1,012,751	-				-0.3
1,012,751	-				-2.4
1,012,751	-				+0.7
1,012,751	-				+0.7
1,012,751	-				+0.5
1,012,751	-				+0.7
1,012,751	-				-0.3
1,012,751	-				+1.0
1,012,815	-				+1.1
1,012,826	+				+1.2
1,012,872	-				-0.9
1,012,872	-				+0.2
1,012,878	+				+1.1
1,012,878	+				+0.8
1,012,878	+				-1.6
1,012,879	-				+0.7
1,012,879	-				+0.2
1,012,879	-				-0.4
1,012,892	+		PFLU_RS04530	0.14	+0.1
1,012,892	+		PFLU_RS04530	0.14	+0.6
1,012,893	-		PFLU_RS04530	0.15	+0.1
1,013,122	-				+0.4
1,013,172	+				+2.4
1,013,172	+				+1.6
1,013,172	+				+0.2
1,013,172	+				+1.1
1,013,172	+				+0.8
1,013,172	+				+0.4
1,013,233	+				+1.0
1,013,234	-				-0.1
1,014,425	-				-0.4
1,014,425	-				-0.1
1,014,425	-				-2.5
1,014,425	-				-2.3
1,014,425	-				+0.2
1,014,425	-				+0.9
1,014,429	-				-1.3
1,014,429	-				-2.1
1,014,438	-				-1.0
1,014,456	+				+0.0
1,014,457	-				+0.4
1,014,457	-				-1.1
1,014,457	-				-0.2
1,014,476	+				+2.1
1,014,484	+				+1.6
1,014,484	+				+1.0
1,014,485	-				-1.0
1,014,488	+				+0.8
1,014,488	+				+1.1
1,014,488	+				-0.6
1,014,488	+				+2.0
1,014,489	-				-1.1
1,014,489	-				-0.2
1,014,500	+				-0.3
1,014,500	+				-0.6
1,014,502	+				+0.3
1,014,502	+				+0.7
1,014,503	-				-0.3
1,014,503	-				+0.8
1,014,503	-				-0.3
1,014,503	-				-2.2
1,014,503	-				+0.7
1,014,503	-				+1.2
1,014,547	+				+2.2
1,014,547	+				-0.1
1,014,547	+				+1.6
1,014,547	+				-0.2
1,014,547	+				-0.2
1,014,547	+				+1.2
1,014,548	-		PFLU_RS04540	0.10	-0.7
1,014,548	-		PFLU_RS04540	0.10	-1.8
1,014,548	-		PFLU_RS04540	0.10	+1.8
1,014,548	-		PFLU_RS04540	0.10	-2.1
1,014,548	-		PFLU_RS04540	0.10	-0.3
1,014,559	+		PFLU_RS04540	0.16	-2.2
1,014,559	+		PFLU_RS04540	0.16	-1.2
1,014,559	+		PFLU_RS04540	0.16	-1.2
1,014,560	-		PFLU_RS04540	0.17	-3.4
1,014,560	-		PFLU_RS04540	0.17	-1.1
1,014,560	-		PFLU_RS04540	0.17	-0.9
1,014,560	-		PFLU_RS04540	0.17	-1.9
1,014,560	-		PFLU_RS04540	0.17	-2.8
1,014,613	+		PFLU_RS04540	0.46	-0.8
1,014,613	+		PFLU_RS04540	0.46	-0.0
1,014,613	+		PFLU_RS04540	0.46	+1.2
1,014,613	+		PFLU_RS04540	0.46	+0.2
1,014,613	+		PFLU_RS04540	0.46	-0.1
1,014,613	+		PFLU_RS04540	0.46	+0.0
1,014,613	+		PFLU_RS04540	0.46	+0.9
1,014,613	+		PFLU_RS04540	0.46	+1.4
1,014,613	+		PFLU_RS04540	0.46	+2.4
1,014,613	+		PFLU_RS04540	0.46	-0.6
1,014,613	+		PFLU_RS04540	0.46	-1.0
1,014,613	+		PFLU_RS04540	0.46	-0.3
1,014,613	+		PFLU_RS04540	0.46	+0.6
1,014,613	+		PFLU_RS04540	0.46	+1.0
1,014,613	+		PFLU_RS04540	0.46	-0.4
1,014,613	+		PFLU_RS04540	0.46	+0.8
1,014,613	+		PFLU_RS04540	0.46	+1.3
1,014,613	+		PFLU_RS04540	0.46	+1.3
1,014,613	+		PFLU_RS04540	0.46	+1.7
1,014,613	+		PFLU_RS04540	0.46	+0.7
1,014,613	+		PFLU_RS04540	0.46	-0.6
1,014,613	+		PFLU_RS04540	0.46	-0.2
1,014,613	+		PFLU_RS04540	0.46	+1.4
1,014,613	+		PFLU_RS04540	0.46	+0.2
1,014,613	+		PFLU_RS04540	0.46	-0.2
1,014,613	+		PFLU_RS04540	0.46	-0.4
1,014,613	+		PFLU_RS04540	0.46	+0.4
1,014,613	+		PFLU_RS04540	0.46	-2.6
1,014,613	+		PFLU_RS04540	0.46	-0.1
1,014,613	+		PFLU_RS04540	0.46	+0.8
1,014,613	+		PFLU_RS04540	0.46	+2.4
1,014,613	+		PFLU_RS04540	0.46	-0.7
1,014,613	+		PFLU_RS04540	0.46	-1.3
1,014,613	+		PFLU_RS04540	0.46	+0.5
1,014,613	+		PFLU_RS04540	0.46	+0.0
1,014,613	+		PFLU_RS04540	0.46	+1.7
1,014,613	+		PFLU_RS04540	0.46	+0.8
1,014,613	+		PFLU_RS04540	0.46	+1.6
1,014,614	-		PFLU_RS04540	0.46	-0.9
1,014,614	-		PFLU_RS04540	0.46	-1.0
1,014,614	-		PFLU_RS04540	0.46	-0.9
1,014,614	-		PFLU_RS04540	0.46	+0.7
1,014,614	-		PFLU_RS04540	0.46	+1.3
1,014,614	-		PFLU_RS04540	0.46	+0.3
1,014,614	-		PFLU_RS04540	0.46	-0.3
1,014,614	-		PFLU_RS04540	0.46	-0.7
1,014,614	-		PFLU_RS04540	0.46	-1.2
1,014,614	-		PFLU_RS04540	0.46	-0.7
1,014,614	-		PFLU_RS04540	0.46	-0.5
1,014,614	-		PFLU_RS04540	0.46	-0.7
1,014,614	-		PFLU_RS04540	0.46	+2.0
1,014,614	-		PFLU_RS04540	0.46	-2.2
1,014,614	-		PFLU_RS04540	0.46	-0.3
1,014,614	-		PFLU_RS04540	0.46	+0.5
1,014,614	-		PFLU_RS04540	0.46	-0.2
1,014,614	-		PFLU_RS04540	0.46	-1.2
1,014,614	-		PFLU_RS04540	0.46	-2.7
1,014,614	-		PFLU_RS04540	0.46	-2.8
1,014,614	-		PFLU_RS04540	0.46	-0.7
1,014,614	-		PFLU_RS04540	0.46	+0.5
1,014,614	-		PFLU_RS04540	0.46	-1.3
1,014,614	-		PFLU_RS04540	0.46	-1.5
1,014,615	+		PFLU_RS04540	0.47	+0.3
1,014,615	+		PFLU_RS04540	0.47	+1.1
1,014,615	+		PFLU_RS04540	0.47	-1.5
1,014,615	+		PFLU_RS04540	0.47	+0.3
1,014,615	+		PFLU_RS04540	0.47	+1.4
1,014,615	+		PFLU_RS04540	0.47	-0.5
1,014,616	-		PFLU_RS04540	0.48	-1.0
1,014,616	-		PFLU_RS04540	0.48	-0.4
1,014,616	-		PFLU_RS04540	0.48	+0.9
1,014,616	-		PFLU_RS04540	0.48	-0.6
1,014,616	-		PFLU_RS04540	0.48	-1.0
1,014,616	-		PFLU_RS04540	0.48	-2.9
1,014,616	-		PFLU_RS04540	0.48	-0.7
1,014,616	-		PFLU_RS04540	0.48	-0.9
1,014,617	+		PFLU_RS04540	0.48	+0.8
1,014,617	+		PFLU_RS04540	0.48	-0.1
1,014,617	+		PFLU_RS04540	0.48	+1.3
1,014,617	+		PFLU_RS04540	0.48	-2.6
1,014,617	+		PFLU_RS04540	0.48	-0.4
1,014,617	+		PFLU_RS04540	0.48	+0.6
1,014,617	+		PFLU_RS04540	0.48	+0.3
1,014,617	+		PFLU_RS04540	0.48	-0.1
1,014,617	+		PFLU_RS04540	0.48	+0.8
1,014,617	+		PFLU_RS04540	0.48	+1.0
1,014,617	+		PFLU_RS04540	0.48	-0.1
1,014,617	+		PFLU_RS04540	0.48	+0.1
1,014,617	+		PFLU_RS04540	0.48	-1.4
1,014,617	+		PFLU_RS04540	0.48	+0.0
1,014,617	+		PFLU_RS04540	0.48	+0.2
1,014,617	+		PFLU_RS04540	0.48	+1.5
1,014,617	+		PFLU_RS04540	0.48	+0.2
1,014,617	+		PFLU_RS04540	0.48	+0.1
1,014,617	+		PFLU_RS04540	0.48	+1.2
1,014,617	+		PFLU_RS04540	0.48	-0.2
1,014,617	+		PFLU_RS04540	0.48	+0.2
1,014,617	+		PFLU_RS04540	0.48	-1.6
1,014,617	+		PFLU_RS04540	0.48	+0.0
1,014,617	+		PFLU_RS04540	0.48	+0.5
1,014,617	+		PFLU_RS04540	0.48	+1.0
1,014,617	+		PFLU_RS04540	0.48	-0.3
1,014,617	+		PFLU_RS04540	0.48	+0.5
1,014,617	+		PFLU_RS04540	0.48	+0.4
1,014,617	+		PFLU_RS04540	0.48	+1.8
1,014,617	+		PFLU_RS04540	0.48	+0.3
1,014,617	+		PFLU_RS04540	0.48	+0.2
1,014,617	+		PFLU_RS04540	0.48	+0.8
1,014,617	+		PFLU_RS04540	0.48	+1.3
1,014,618	-		PFLU_RS04540	0.49	-1.6
1,014,618	-		PFLU_RS04540	0.49	-0.3
1,014,618	-		PFLU_RS04540	0.49	-1.3
1,014,618	-		PFLU_RS04540	0.49	-2.9
1,014,618	-		PFLU_RS04540	0.49	-1.1
1,014,618	-		PFLU_RS04540	0.49	-0.7
1,014,618	-		PFLU_RS04540	0.49	+0.7
1,014,618	-		PFLU_RS04540	0.49	-1.5
1,014,618	-		PFLU_RS04540	0.49	-1.4
1,014,618	-		PFLU_RS04540	0.49	-0.9
1,014,618	-		PFLU_RS04540	0.49	+1.7
1,014,618	-		PFLU_RS04540	0.49	-1.6
1,014,618	-		PFLU_RS04540	0.49	-0.6
1,014,618	-		PFLU_RS04540	0.49	-1.8
1,014,618	-		PFLU_RS04540	0.49	-0.5
1,014,618	-		PFLU_RS04540	0.49	-1.7
1,014,618	-		PFLU_RS04540	0.49	-0.4
1,014,618	-		PFLU_RS04540	0.49	-1.1
1,014,618	-		PFLU_RS04540	0.49	-0.6
1,014,618	-		PFLU_RS04540	0.49	+0.8
1,014,618	-		PFLU_RS04540	0.49	-0.9
1,014,618	-		PFLU_RS04540	0.49	-2.1
1,014,618	-		PFLU_RS04540	0.49	-2.8
1,014,618	-		PFLU_RS04540	0.49	+0.4
1,014,618	-		PFLU_RS04540	0.49	+0.4
1,014,618	-		PFLU_RS04540	0.49	-0.7
1,014,618	-		PFLU_RS04540	0.49	-0.8
1,014,618	-		PFLU_RS04540	0.49	-1.5
1,014,618	-		PFLU_RS04540	0.49	-1.2
1,014,618	-		PFLU_RS04540	0.49	-0.5
1,014,618	-		PFLU_RS04540	0.49	-2.4
1,014,618	-		PFLU_RS04540	0.49	-1.0
1,014,618	-		PFLU_RS04540	0.49	-0.9
1,014,618	-		PFLU_RS04540	0.49	-0.7
1,014,618	-		PFLU_RS04540	0.49	-0.9
1,014,618	-		PFLU_RS04540	0.49	-0.5
1,014,618	-		PFLU_RS04540	0.49	+0.3
1,014,618	-		PFLU_RS04540	0.49	-0.9
1,014,649	-		PFLU_RS04540	0.66	+0.6
1,014,735	+				+0.3
1,014,735	+				+0.0
1,014,735	+				+1.0
1,014,736	-				-0.3
1,014,736	-				-1.0
1,014,736	-				-1.4
1,014,736	-				+1.2
1,014,736	-				-1.0
1,014,736	-				+1.7
1,014,859	+		PFLU_RS04545	0.52	+0.3
1,014,918	+		PFLU_RS04545	0.75	-0.6
1,014,918	+		PFLU_RS04545	0.75	+1.8
1,014,918	+		PFLU_RS04545	0.75	-2.3
1,014,918	+		PFLU_RS04545	0.75	-0.6
1,014,918	+		PFLU_RS04545	0.75	+0.6
1,014,918	+		PFLU_RS04545	0.75	+1.1
1,014,918	+		PFLU_RS04545	0.75	-0.8
1,014,918	+		PFLU_RS04545	0.75	+0.9
1,014,918	+		PFLU_RS04545	0.75	+0.9
1,014,919	-		PFLU_RS04545	0.75	+1.4
1,014,919	-		PFLU_RS04545	0.75	+0.2
1,014,919	-		PFLU_RS04545	0.75	-0.5
1,014,919	-		PFLU_RS04545	0.75	+0.4
1,014,919	-		PFLU_RS04545	0.75	+0.5
1,014,919	-		PFLU_RS04545	0.75	+0.8
1,014,981	+				-0.3
1,014,981	+				-0.6
1,014,981	+				-0.7
1,014,981	+				+0.6
1,014,981	+				+1.2
1,014,999	-				+0.0