Experiment: NAG (C); with MOPS
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS03835 and PFLU_RS03840 overlap by 4 nucleotides PFLU_RS03840 and PFLU_RS03845 are separated by 7 nucleotides PFLU_RS03845 and PFLU_RS03850 are separated by 22 nucleotides PFLU_RS03850 and PFLU_RS03855 are separated by 62 nucleotides
PFLU_RS03835: PFLU_RS03835 - type IV pilus modification protein PilV, at 875,807 to 876,292
_RS03835
PFLU_RS03840: PFLU_RS03840 - prepilin-type N-terminal cleavage/methylation domain-containing protein, at 876,289 to 876,996
_RS03840
PFLU_RS03845: PFLU_RS03845 - pilus assembly protein PilX, at 877,004 to 877,534
_RS03845
PFLU_RS03850: PFLU_RS03850 - prepilin-type N-terminal cleavage/methylation domain-containing protein, at 877,557 to 877,958
_RS03850
PFLU_RS03855: PFLU_RS03855 - glycine oxidase ThiO, at 878,021 to 879,130
_RS03855
Position (kb) 877
878 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 876.038 kb on + strand, within PFLU_RS03835 at 876.038 kb on + strand, within PFLU_RS03835 at 876.038 kb on + strand, within PFLU_RS03835 at 876.039 kb on - strand, within PFLU_RS03835 at 876.039 kb on - strand, within PFLU_RS03835 at 876.039 kb on - strand, within PFLU_RS03835 at 876.039 kb on - strand, within PFLU_RS03835 at 876.125 kb on - strand, within PFLU_RS03835 at 876.125 kb on - strand, within PFLU_RS03835 at 876.125 kb on - strand, within PFLU_RS03835 at 876.264 kb on + strand at 876.265 kb on - strand at 876.456 kb on + strand, within PFLU_RS03840 at 876.457 kb on - strand, within PFLU_RS03840 at 876.513 kb on + strand, within PFLU_RS03840 at 876.618 kb on + strand, within PFLU_RS03840 at 876.618 kb on + strand, within PFLU_RS03840 at 876.619 kb on - strand, within PFLU_RS03840 at 876.667 kb on + strand, within PFLU_RS03840 at 876.667 kb on + strand, within PFLU_RS03840 at 876.667 kb on + strand, within PFLU_RS03840 at 876.668 kb on - strand, within PFLU_RS03840 at 876.668 kb on - strand, within PFLU_RS03840 at 876.668 kb on - strand, within PFLU_RS03840 at 876.668 kb on - strand, within PFLU_RS03840 at 876.730 kb on + strand, within PFLU_RS03840 at 876.730 kb on + strand, within PFLU_RS03840 at 876.730 kb on + strand, within PFLU_RS03840 at 876.730 kb on + strand, within PFLU_RS03840 at 876.730 kb on + strand, within PFLU_RS03840 at 876.731 kb on - strand, within PFLU_RS03840 at 876.731 kb on - strand, within PFLU_RS03840 at 876.731 kb on - strand, within PFLU_RS03840 at 876.731 kb on - strand, within PFLU_RS03840 at 876.731 kb on - strand, within PFLU_RS03840 at 876.731 kb on - strand, within PFLU_RS03840 at 876.731 kb on - strand, within PFLU_RS03840 at 876.731 kb on - strand, within PFLU_RS03840 at 876.731 kb on - strand, within PFLU_RS03840 at 876.788 kb on + strand, within PFLU_RS03840 at 876.865 kb on + strand, within PFLU_RS03840 at 876.897 kb on - strand, within PFLU_RS03840 at 876.958 kb on + strand at 876.958 kb on + strand at 876.958 kb on + strand at 876.958 kb on + strand at 876.958 kb on + strand at 876.959 kb on - strand at 876.994 kb on + strand at 876.995 kb on - strand at 877.153 kb on + strand, within PFLU_RS03845 at 877.154 kb on - strand, within PFLU_RS03845 at 877.206 kb on + strand, within PFLU_RS03845 at 877.206 kb on + strand, within PFLU_RS03845 at 877.207 kb on - strand, within PFLU_RS03845 at 877.207 kb on - strand, within PFLU_RS03845 at 877.207 kb on - strand, within PFLU_RS03845 at 877.371 kb on + strand, within PFLU_RS03845 at 877.371 kb on + strand, within PFLU_RS03845 at 877.372 kb on - strand, within PFLU_RS03845 at 877.456 kb on - strand, within PFLU_RS03845 at 877.456 kb on - strand, within PFLU_RS03845 at 877.456 kb on - strand, within PFLU_RS03845 at 877.469 kb on + strand, within PFLU_RS03845 at 877.470 kb on - strand, within PFLU_RS03845 at 877.470 kb on - strand, within PFLU_RS03845 at 877.532 kb on + strand at 877.533 kb on - strand at 877.533 kb on - strand at 877.533 kb on - strand at 877.542 kb on + strand at 877.542 kb on + strand at 877.542 kb on + strand at 877.542 kb on + strand at 877.542 kb on + strand at 877.542 kb on + strand at 877.542 kb on + strand at 877.542 kb on + strand at 877.542 kb on + strand at 877.542 kb on + strand at 877.542 kb on + strand at 877.542 kb on + strand at 877.542 kb on + strand at 877.542 kb on + strand at 877.542 kb on + strand at 877.542 kb on + strand at 877.543 kb on - strand at 877.543 kb on - strand at 877.543 kb on - strand at 877.543 kb on - strand at 877.543 kb on - strand at 877.543 kb on - strand at 877.543 kb on - strand at 877.543 kb on - strand at 877.543 kb on - strand at 877.543 kb on - strand at 877.543 kb on - strand at 877.543 kb on - strand at 877.543 kb on - strand at 877.543 kb on - strand at 877.543 kb on - strand at 877.543 kb on - strand at 877.580 kb on + strand at 877.581 kb on - strand at 877.594 kb on + strand at 877.594 kb on + strand at 877.595 kb on - strand at 877.595 kb on - strand at 877.638 kb on + strand, within PFLU_RS03850 at 877.638 kb on + strand, within PFLU_RS03850 at 877.639 kb on - strand, within PFLU_RS03850 at 877.647 kb on + strand, within PFLU_RS03850 at 877.647 kb on + strand, within PFLU_RS03850 at 877.693 kb on + strand, within PFLU_RS03850 at 877.693 kb on + strand, within PFLU_RS03850 at 877.693 kb on + strand, within PFLU_RS03850 at 877.748 kb on + strand, within PFLU_RS03850 at 877.748 kb on + strand, within PFLU_RS03850 at 877.749 kb on - strand, within PFLU_RS03850 at 877.787 kb on + strand, within PFLU_RS03850 at 877.787 kb on + strand, within PFLU_RS03850 at 877.787 kb on + strand, within PFLU_RS03850 at 877.787 kb on + strand, within PFLU_RS03850 at 877.787 kb on + strand, within PFLU_RS03850 at 877.787 kb on + strand, within PFLU_RS03850 at 877.787 kb on + strand, within PFLU_RS03850 at 877.787 kb on + strand, within PFLU_RS03850 at 877.787 kb on + strand, within PFLU_RS03850 at 877.787 kb on + strand, within PFLU_RS03850 at 877.787 kb on + strand, within PFLU_RS03850 at 877.788 kb on - strand, within PFLU_RS03850 at 877.879 kb on - strand, within PFLU_RS03850 at 877.999 kb on + strand at 877.999 kb on + strand at 877.999 kb on + strand at 878.000 kb on - strand at 878.000 kb on - strand at 878.027 kb on - strand at 878.027 kb on - strand at 878.180 kb on + strand, within PFLU_RS03855 at 878.181 kb on - strand, within PFLU_RS03855 at 878.181 kb on - strand, within PFLU_RS03855 at 878.192 kb on + strand, within PFLU_RS03855 at 878.193 kb on - strand, within PFLU_RS03855 at 878.194 kb on + strand, within PFLU_RS03855 at 878.238 kb on - strand, within PFLU_RS03855 at 878.307 kb on - strand, within PFLU_RS03855 at 878.374 kb on + strand, within PFLU_RS03855 at 878.374 kb on + strand, within PFLU_RS03855 at 878.374 kb on + strand, within PFLU_RS03855 at 878.375 kb on - strand, within PFLU_RS03855 at 878.375 kb on - strand, within PFLU_RS03855 at 878.426 kb on + strand, within PFLU_RS03855 at 878.427 kb on - strand, within PFLU_RS03855 at 878.441 kb on + strand, within PFLU_RS03855 at 878.441 kb on + strand, within PFLU_RS03855 at 878.441 kb on + strand, within PFLU_RS03855 at 878.441 kb on + strand, within PFLU_RS03855 at 878.441 kb on + strand, within PFLU_RS03855 at 878.441 kb on + strand, within PFLU_RS03855 at 878.441 kb on + strand, within PFLU_RS03855 at 878.441 kb on + strand, within PFLU_RS03855 at 878.441 kb on + strand, within PFLU_RS03855 at 878.441 kb on + strand, within PFLU_RS03855 at 878.441 kb on + strand, within PFLU_RS03855 at 878.441 kb on + strand, within PFLU_RS03855 at 878.441 kb on + strand, within PFLU_RS03855 at 878.441 kb on + strand, within PFLU_RS03855 at 878.441 kb on + strand, within PFLU_RS03855 at 878.441 kb on + strand, within PFLU_RS03855 at 878.441 kb on + strand, within PFLU_RS03855 at 878.442 kb on - strand, within PFLU_RS03855 at 878.442 kb on - strand, within PFLU_RS03855 at 878.442 kb on - strand, within PFLU_RS03855 at 878.442 kb on - strand, within PFLU_RS03855 at 878.442 kb on - strand, within PFLU_RS03855 at 878.442 kb on - strand, within PFLU_RS03855 at 878.442 kb on - strand, within PFLU_RS03855 at 878.442 kb on - strand, within PFLU_RS03855 at 878.442 kb on - strand, within PFLU_RS03855 at 878.442 kb on - strand, within PFLU_RS03855 at 878.442 kb on - strand, within PFLU_RS03855 at 878.442 kb on - strand, within PFLU_RS03855 at 878.442 kb on - strand, within PFLU_RS03855 at 878.442 kb on - strand, within PFLU_RS03855 at 878.442 kb on - strand, within PFLU_RS03855 at 878.442 kb on - strand, within PFLU_RS03855 at 878.442 kb on - strand, within PFLU_RS03855 at 878.442 kb on - strand, within PFLU_RS03855 at 878.442 kb on - strand, within PFLU_RS03855 at 878.442 kb on - strand, within PFLU_RS03855 at 878.442 kb on - strand, within PFLU_RS03855 at 878.442 kb on - strand, within PFLU_RS03855 at 878.442 kb on - strand, within PFLU_RS03855 at 878.442 kb on - strand, within PFLU_RS03855 at 878.443 kb on + strand, within PFLU_RS03855 at 878.443 kb on + strand, within PFLU_RS03855
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C); with MOPS remove 876,038 + PFLU_RS03835 0.48 -1.7 876,038 + PFLU_RS03835 0.48 -0.1 876,038 + PFLU_RS03835 0.48 +0.8 876,039 - PFLU_RS03835 0.48 +0.5 876,039 - PFLU_RS03835 0.48 -1.1 876,039 - PFLU_RS03835 0.48 +0.0 876,039 - PFLU_RS03835 0.48 -0.5 876,125 - PFLU_RS03835 0.65 +1.1 876,125 - PFLU_RS03835 0.65 +1.3 876,125 - PFLU_RS03835 0.65 -1.0 876,264 + +0.4 876,265 - +0.7 876,456 + PFLU_RS03840 0.24 -0.3 876,457 - PFLU_RS03840 0.24 +1.7 876,513 + PFLU_RS03840 0.32 -1.2 876,618 + PFLU_RS03840 0.46 -1.5 876,618 + PFLU_RS03840 0.46 -0.1 876,619 - PFLU_RS03840 0.47 +1.0 876,667 + PFLU_RS03840 0.53 +0.6 876,667 + PFLU_RS03840 0.53 -0.4 876,667 + PFLU_RS03840 0.53 -1.3 876,668 - PFLU_RS03840 0.54 -2.5 876,668 - PFLU_RS03840 0.54 +0.5 876,668 - PFLU_RS03840 0.54 +0.2 876,668 - PFLU_RS03840 0.54 +1.2 876,730 + PFLU_RS03840 0.62 +1.3 876,730 + PFLU_RS03840 0.62 -2.0 876,730 + PFLU_RS03840 0.62 -1.5 876,730 + PFLU_RS03840 0.62 +1.6 876,730 + PFLU_RS03840 0.62 -2.4 876,731 - PFLU_RS03840 0.62 +0.5 876,731 - PFLU_RS03840 0.62 -0.7 876,731 - PFLU_RS03840 0.62 +0.2 876,731 - PFLU_RS03840 0.62 -1.3 876,731 - PFLU_RS03840 0.62 +0.9 876,731 - PFLU_RS03840 0.62 +0.4 876,731 - PFLU_RS03840 0.62 -0.1 876,731 - PFLU_RS03840 0.62 +0.2 876,731 - PFLU_RS03840 0.62 +1.2 876,788 + PFLU_RS03840 0.70 +0.7 876,865 + PFLU_RS03840 0.81 -1.1 876,897 - PFLU_RS03840 0.86 -0.6 876,958 + +1.5 876,958 + -0.8 876,958 + -1.7 876,958 + +0.3 876,958 + -1.0 876,959 - +1.2 876,994 + -0.6 876,995 - -0.1 877,153 + PFLU_RS03845 0.28 -0.0 877,154 - PFLU_RS03845 0.28 -0.1 877,206 + PFLU_RS03845 0.38 -0.9 877,206 + PFLU_RS03845 0.38 +0.1 877,207 - PFLU_RS03845 0.38 +1.4 877,207 - PFLU_RS03845 0.38 +0.5 877,207 - PFLU_RS03845 0.38 +0.5 877,371 + PFLU_RS03845 0.69 +0.2 877,371 + PFLU_RS03845 0.69 +2.7 877,372 - PFLU_RS03845 0.69 +0.3 877,456 - PFLU_RS03845 0.85 -0.9 877,456 - PFLU_RS03845 0.85 +0.1 877,456 - PFLU_RS03845 0.85 -0.3 877,469 + PFLU_RS03845 0.88 -1.7 877,470 - PFLU_RS03845 0.88 +1.0 877,470 - PFLU_RS03845 0.88 -1.8 877,532 + -1.6 877,533 - -0.3 877,533 - +0.8 877,533 - +0.5 877,542 + +0.5 877,542 + -1.5 877,542 + -1.1 877,542 + -2.3 877,542 + -0.9 877,542 + +0.6 877,542 + -0.4 877,542 + -2.2 877,542 + +1.2 877,542 + +0.6 877,542 + -1.2 877,542 + -0.6 877,542 + -0.9 877,542 + -2.1 877,542 + -0.4 877,542 + -0.1 877,543 - +0.1 877,543 - -0.4 877,543 - +0.1 877,543 - +1.0 877,543 - -0.4 877,543 - -0.5 877,543 - -0.2 877,543 - -1.3 877,543 - -1.4 877,543 - +0.8 877,543 - +0.8 877,543 - +1.1 877,543 - +1.4 877,543 - +0.0 877,543 - +0.7 877,543 - +1.7 877,580 + -0.8 877,581 - -2.4 877,594 + -0.2 877,594 + -1.8 877,595 - +1.0 877,595 - +0.8 877,638 + PFLU_RS03850 0.20 +0.5 877,638 + PFLU_RS03850 0.20 +0.9 877,639 - PFLU_RS03850 0.20 +0.3 877,647 + PFLU_RS03850 0.22 +3.6 877,647 + PFLU_RS03850 0.22 +2.7 877,693 + PFLU_RS03850 0.34 -0.7 877,693 + PFLU_RS03850 0.34 +0.1 877,693 + PFLU_RS03850 0.34 -0.0 877,748 + PFLU_RS03850 0.48 +0.1 877,748 + PFLU_RS03850 0.48 -0.0 877,749 - PFLU_RS03850 0.48 +1.7 877,787 + PFLU_RS03850 0.57 -1.9 877,787 + PFLU_RS03850 0.57 +0.0 877,787 + PFLU_RS03850 0.57 -1.0 877,787 + PFLU_RS03850 0.57 -1.2 877,787 + PFLU_RS03850 0.57 -0.9 877,787 + PFLU_RS03850 0.57 +0.1 877,787 + PFLU_RS03850 0.57 +1.0 877,787 + PFLU_RS03850 0.57 +1.0 877,787 + PFLU_RS03850 0.57 -0.3 877,787 + PFLU_RS03850 0.57 -0.2 877,787 + PFLU_RS03850 0.57 +0.9 877,788 - PFLU_RS03850 0.57 -1.3 877,879 - PFLU_RS03850 0.80 -1.9 877,999 + +0.5 877,999 + -0.2 877,999 + +1.0 878,000 - +1.5 878,000 - +0.1 878,027 - +0.3 878,027 - -2.1 878,180 + PFLU_RS03855 0.14 +1.5 878,181 - PFLU_RS03855 0.14 -2.1 878,181 - PFLU_RS03855 0.14 -0.4 878,192 + PFLU_RS03855 0.15 +0.5 878,193 - PFLU_RS03855 0.15 +0.6 878,194 + PFLU_RS03855 0.16 -2.3 878,238 - PFLU_RS03855 0.20 +0.4 878,307 - PFLU_RS03855 0.26 +1.6 878,374 + PFLU_RS03855 0.32 -0.7 878,374 + PFLU_RS03855 0.32 +0.1 878,374 + PFLU_RS03855 0.32 +1.0 878,375 - PFLU_RS03855 0.32 -1.5 878,375 - PFLU_RS03855 0.32 -0.6 878,426 + PFLU_RS03855 0.36 -1.5 878,427 - PFLU_RS03855 0.37 +2.5 878,441 + PFLU_RS03855 0.38 +1.7 878,441 + PFLU_RS03855 0.38 +0.6 878,441 + PFLU_RS03855 0.38 -0.0 878,441 + PFLU_RS03855 0.38 +0.1 878,441 + PFLU_RS03855 0.38 +0.7 878,441 + PFLU_RS03855 0.38 +0.6 878,441 + PFLU_RS03855 0.38 +0.6 878,441 + PFLU_RS03855 0.38 +2.3 878,441 + PFLU_RS03855 0.38 -0.0 878,441 + PFLU_RS03855 0.38 -0.4 878,441 + PFLU_RS03855 0.38 -0.7 878,441 + PFLU_RS03855 0.38 +0.4 878,441 + PFLU_RS03855 0.38 -2.5 878,441 + PFLU_RS03855 0.38 -0.9 878,441 + PFLU_RS03855 0.38 +0.6 878,441 + PFLU_RS03855 0.38 +0.6 878,441 + PFLU_RS03855 0.38 -1.2 878,442 - PFLU_RS03855 0.38 -0.2 878,442 - PFLU_RS03855 0.38 +1.6 878,442 - PFLU_RS03855 0.38 +0.5 878,442 - PFLU_RS03855 0.38 -1.7 878,442 - PFLU_RS03855 0.38 +0.7 878,442 - PFLU_RS03855 0.38 -0.7 878,442 - PFLU_RS03855 0.38 -0.9 878,442 - PFLU_RS03855 0.38 +0.7 878,442 - PFLU_RS03855 0.38 -0.5 878,442 - PFLU_RS03855 0.38 -0.6 878,442 - PFLU_RS03855 0.38 +0.4 878,442 - PFLU_RS03855 0.38 +0.1 878,442 - PFLU_RS03855 0.38 -2.6 878,442 - PFLU_RS03855 0.38 +0.2 878,442 - PFLU_RS03855 0.38 +0.5 878,442 - PFLU_RS03855 0.38 -1.3 878,442 - PFLU_RS03855 0.38 +3.1 878,442 - PFLU_RS03855 0.38 -0.2 878,442 - PFLU_RS03855 0.38 -0.9 878,442 - PFLU_RS03855 0.38 -0.3 878,442 - PFLU_RS03855 0.38 +0.7 878,442 - PFLU_RS03855 0.38 +1.0 878,442 - PFLU_RS03855 0.38 +0.5 878,442 - PFLU_RS03855 0.38 +1.3 878,443 + PFLU_RS03855 0.38 +0.0 878,443 + PFLU_RS03855 0.38 +0.3
Or see this region's nucleotide sequence