Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS02980

Experiment: NAG (C); with MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS02975 and PFLU_RS02980 overlap by 8 nucleotidesPFLU_RS02980 and PFLU_RS02985 overlap by 1 nucleotidesPFLU_RS02985 and PFLU_RS02990 overlap by 1 nucleotides PFLU_RS02975: PFLU_RS02975 - precorrin-3B synthase, at 684,611 to 685,957 _RS02975 PFLU_RS02980: PFLU_RS02980 - precorrin-8X methylmutase, at 685,950 to 686,576 _RS02980 PFLU_RS02985: PFLU_RS02985 - precorrin-2 C(20)-methyltransferase, at 686,576 to 687,307 _RS02985 PFLU_RS02990: PFLU_RS02990 - precorrin-3B C(17)-methyltransferase, at 687,307 to 688,944 _RS02990 Position (kb) 685 686 687Strain fitness (log2 ratio) -3 -2 -1 0 1at 684.960 kb on + strand, within PFLU_RS02975at 684.960 kb on + strand, within PFLU_RS02975at 684.960 kb on + strand, within PFLU_RS02975at 684.960 kb on + strand, within PFLU_RS02975at 684.960 kb on + strand, within PFLU_RS02975at 684.960 kb on + strand, within PFLU_RS02975at 684.960 kb on + strand, within PFLU_RS02975at 684.960 kb on + strand, within PFLU_RS02975at 684.961 kb on - strand, within PFLU_RS02975at 684.961 kb on - strand, within PFLU_RS02975at 684.961 kb on - strand, within PFLU_RS02975at 684.961 kb on - strand, within PFLU_RS02975at 684.961 kb on - strand, within PFLU_RS02975at 684.961 kb on - strand, within PFLU_RS02975at 684.961 kb on - strand, within PFLU_RS02975at 685.366 kb on - strand, within PFLU_RS02975at 685.366 kb on - strand, within PFLU_RS02975at 685.425 kb on - strand, within PFLU_RS02975at 685.451 kb on + strand, within PFLU_RS02975at 685.451 kb on + strand, within PFLU_RS02975at 685.452 kb on - strand, within PFLU_RS02975at 685.452 kb on - strand, within PFLU_RS02975at 685.835 kb on + strandat 685.844 kb on + strandat 685.845 kb on - strandat 685.900 kb on + strandat 685.900 kb on + strandat 685.901 kb on - strandat 685.901 kb on - strandat 685.959 kb on + strandat 685.959 kb on + strandat 685.959 kb on + strandat 685.960 kb on - strandat 685.960 kb on - strandat 685.960 kb on - strandat 685.960 kb on - strandat 685.960 kb on - strandat 685.960 kb on - strandat 686.373 kb on + strand, within PFLU_RS02980at 686.373 kb on + strand, within PFLU_RS02980at 686.681 kb on + strand, within PFLU_RS02985at 686.682 kb on - strand, within PFLU_RS02985at 686.768 kb on + strand, within PFLU_RS02985at 686.769 kb on - strand, within PFLU_RS02985at 686.788 kb on - strand, within PFLU_RS02985at 686.788 kb on - strand, within PFLU_RS02985at 686.807 kb on + strand, within PFLU_RS02985at 686.807 kb on + strand, within PFLU_RS02985at 686.807 kb on + strand, within PFLU_RS02985at 686.807 kb on + strand, within PFLU_RS02985at 686.808 kb on - strand, within PFLU_RS02985at 686.831 kb on + strand, within PFLU_RS02985at 686.831 kb on + strand, within PFLU_RS02985at 686.915 kb on + strand, within PFLU_RS02985at 686.924 kb on + strand, within PFLU_RS02985at 686.924 kb on + strand, within PFLU_RS02985at 686.924 kb on + strand, within PFLU_RS02985at 686.924 kb on + strand, within PFLU_RS02985at 686.924 kb on + strand, within PFLU_RS02985at 686.924 kb on + strand, within PFLU_RS02985at 686.924 kb on + strand, within PFLU_RS02985at 686.924 kb on + strand, within PFLU_RS02985at 686.924 kb on + strand, within PFLU_RS02985at 686.924 kb on + strand, within PFLU_RS02985at 686.924 kb on + strand, within PFLU_RS02985at 686.925 kb on - strand, within PFLU_RS02985at 686.925 kb on - strand, within PFLU_RS02985at 686.925 kb on - strand, within PFLU_RS02985at 686.925 kb on - strand, within PFLU_RS02985at 686.925 kb on - strand, within PFLU_RS02985at 686.925 kb on - strand, within PFLU_RS02985at 686.925 kb on - strand, within PFLU_RS02985at 686.925 kb on - strand, within PFLU_RS02985at 686.925 kb on - strand, within PFLU_RS02985at 686.930 kb on + strand, within PFLU_RS02985at 686.930 kb on + strand, within PFLU_RS02985at 686.930 kb on + strand, within PFLU_RS02985at 686.930 kb on + strand, within PFLU_RS02985at 686.930 kb on + strand, within PFLU_RS02985at 686.930 kb on + strand, within PFLU_RS02985at 686.930 kb on + strand, within PFLU_RS02985at 686.931 kb on - strand, within PFLU_RS02985at 686.931 kb on - strand, within PFLU_RS02985at 686.931 kb on - strand, within PFLU_RS02985at 686.931 kb on - strand, within PFLU_RS02985at 686.931 kb on - strand, within PFLU_RS02985at 686.931 kb on - strand, within PFLU_RS02985at 686.931 kb on - strand, within PFLU_RS02985at 686.931 kb on - strand, within PFLU_RS02985at 686.931 kb on - strand, within PFLU_RS02985at 686.931 kb on - strand, within PFLU_RS02985at 686.931 kb on - strand, within PFLU_RS02985at 686.958 kb on - strand, within PFLU_RS02985at 687.191 kb on + strand, within PFLU_RS02985at 687.191 kb on + strand, within PFLU_RS02985at 687.191 kb on + strand, within PFLU_RS02985at 687.191 kb on + strand, within PFLU_RS02985at 687.191 kb on + strand, within PFLU_RS02985at 687.191 kb on + strand, within PFLU_RS02985at 687.191 kb on + strand, within PFLU_RS02985at 687.192 kb on - strand, within PFLU_RS02985at 687.192 kb on - strand, within PFLU_RS02985at 687.192 kb on - strand, within PFLU_RS02985at 687.192 kb on - strand, within PFLU_RS02985at 687.192 kb on - strand, within PFLU_RS02985at 687.192 kb on - strand, within PFLU_RS02985at 687.192 kb on - strand, within PFLU_RS02985at 687.192 kb on - strand, within PFLU_RS02985at 687.192 kb on - strand, within PFLU_RS02985at 687.192 kb on - strand, within PFLU_RS02985at 687.192 kb on - strand, within PFLU_RS02985at 687.263 kb on + strandat 687.264 kb on - strandat 687.264 kb on - strandat 687.264 kb on - strandat 687.264 kb on - strandat 687.430 kb on + strandat 687.431 kb on - strandat 687.431 kb on - strandat 687.431 kb on - strandat 687.431 kb on - strandat 687.431 kb on - strandat 687.463 kb on + strandat 687.504 kb on + strand, within PFLU_RS02990at 687.504 kb on + strand, within PFLU_RS02990

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C); with MOPS
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684,960 + PFLU_RS02975 0.26 -0.8
684,960 + PFLU_RS02975 0.26 -1.5
684,960 + PFLU_RS02975 0.26 -1.2
684,960 + PFLU_RS02975 0.26 -1.0
684,960 + PFLU_RS02975 0.26 -2.3
684,960 + PFLU_RS02975 0.26 -1.2
684,960 + PFLU_RS02975 0.26 -0.2
684,960 + PFLU_RS02975 0.26 -1.9
684,961 - PFLU_RS02975 0.26 +0.5
684,961 - PFLU_RS02975 0.26 -2.9
684,961 - PFLU_RS02975 0.26 -1.3
684,961 - PFLU_RS02975 0.26 -1.1
684,961 - PFLU_RS02975 0.26 -1.0
684,961 - PFLU_RS02975 0.26 -3.0
684,961 - PFLU_RS02975 0.26 -0.3
685,366 - PFLU_RS02975 0.56 +0.8
685,366 - PFLU_RS02975 0.56 -2.5
685,425 - PFLU_RS02975 0.60 +0.0
685,451 + PFLU_RS02975 0.62 -2.0
685,451 + PFLU_RS02975 0.62 -1.8
685,452 - PFLU_RS02975 0.62 -1.5
685,452 - PFLU_RS02975 0.62 -2.0
685,835 + +0.4
685,844 + -3.4
685,845 - -2.2
685,900 + -2.8
685,900 + -2.5
685,901 - -1.3
685,901 - -1.8
685,959 + -0.6
685,959 + -1.6
685,959 + -2.6
685,960 - -0.8
685,960 - -0.8
685,960 - -2.1
685,960 - +0.1
685,960 - -2.3
685,960 - -2.3
686,373 + PFLU_RS02980 0.67 -1.8
686,373 + PFLU_RS02980 0.67 -1.9
686,681 + PFLU_RS02985 0.14 +0.4
686,682 - PFLU_RS02985 0.14 -1.8
686,768 + PFLU_RS02985 0.26 -0.6
686,769 - PFLU_RS02985 0.26 -2.4
686,788 - PFLU_RS02985 0.29 -3.1
686,788 - PFLU_RS02985 0.29 -2.3
686,807 + PFLU_RS02985 0.32 -0.1
686,807 + PFLU_RS02985 0.32 -0.8
686,807 + PFLU_RS02985 0.32 -2.0
686,807 + PFLU_RS02985 0.32 -1.6
686,808 - PFLU_RS02985 0.32 -1.1
686,831 + PFLU_RS02985 0.35 -2.1
686,831 + PFLU_RS02985 0.35 -0.6
686,915 + PFLU_RS02985 0.46 -3.2
686,924 + PFLU_RS02985 0.48 -1.3
686,924 + PFLU_RS02985 0.48 -0.8
686,924 + PFLU_RS02985 0.48 -2.2
686,924 + PFLU_RS02985 0.48 -3.0
686,924 + PFLU_RS02985 0.48 +0.5
686,924 + PFLU_RS02985 0.48 -1.3
686,924 + PFLU_RS02985 0.48 -1.9
686,924 + PFLU_RS02985 0.48 -0.9
686,924 + PFLU_RS02985 0.48 -1.6
686,924 + PFLU_RS02985 0.48 -2.5
686,924 + PFLU_RS02985 0.48 -1.7
686,925 - PFLU_RS02985 0.48 -0.1
686,925 - PFLU_RS02985 0.48 -1.5
686,925 - PFLU_RS02985 0.48 -0.7
686,925 - PFLU_RS02985 0.48 -2.6
686,925 - PFLU_RS02985 0.48 -0.0
686,925 - PFLU_RS02985 0.48 -1.3
686,925 - PFLU_RS02985 0.48 -0.5
686,925 - PFLU_RS02985 0.48 -1.2
686,925 - PFLU_RS02985 0.48 -0.3
686,930 + PFLU_RS02985 0.48 -0.8
686,930 + PFLU_RS02985 0.48 -0.5
686,930 + PFLU_RS02985 0.48 -2.2
686,930 + PFLU_RS02985 0.48 -1.3
686,930 + PFLU_RS02985 0.48 -0.6
686,930 + PFLU_RS02985 0.48 -0.7
686,930 + PFLU_RS02985 0.48 -1.4
686,931 - PFLU_RS02985 0.48 -1.7
686,931 - PFLU_RS02985 0.48 -2.4
686,931 - PFLU_RS02985 0.48 -1.6
686,931 - PFLU_RS02985 0.48 -2.1
686,931 - PFLU_RS02985 0.48 +0.9
686,931 - PFLU_RS02985 0.48 -1.1
686,931 - PFLU_RS02985 0.48 +0.9
686,931 - PFLU_RS02985 0.48 -0.9
686,931 - PFLU_RS02985 0.48 -1.7
686,931 - PFLU_RS02985 0.48 +0.6
686,931 - PFLU_RS02985 0.48 -2.3
686,958 - PFLU_RS02985 0.52 -2.0
687,191 + PFLU_RS02985 0.84 -3.0
687,191 + PFLU_RS02985 0.84 -1.7
687,191 + PFLU_RS02985 0.84 -0.1
687,191 + PFLU_RS02985 0.84 -2.5
687,191 + PFLU_RS02985 0.84 +1.2
687,191 + PFLU_RS02985 0.84 -0.5
687,191 + PFLU_RS02985 0.84 -2.4
687,192 - PFLU_RS02985 0.84 +0.5
687,192 - PFLU_RS02985 0.84 +0.7
687,192 - PFLU_RS02985 0.84 -0.9
687,192 - PFLU_RS02985 0.84 -1.5
687,192 - PFLU_RS02985 0.84 -0.8
687,192 - PFLU_RS02985 0.84 +1.7
687,192 - PFLU_RS02985 0.84 +0.1
687,192 - PFLU_RS02985 0.84 -0.0
687,192 - PFLU_RS02985 0.84 -2.3
687,192 - PFLU_RS02985 0.84 -1.6
687,192 - PFLU_RS02985 0.84 -3.3
687,263 + +0.0
687,264 - -3.0
687,264 - -0.9
687,264 - +0.2
687,264 - -1.2
687,430 + -0.3
687,431 - -2.3
687,431 - -0.9
687,431 - -3.1
687,431 - -1.9
687,431 - +0.2
687,463 + -0.5
687,504 + PFLU_RS02990 0.12 -1.8
687,504 + PFLU_RS02990 0.12 -2.8

Or see this region's nucleotide sequence