Experiment: Inosine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_22215 and PS417_22220 are separated by 352 nucleotides PS417_22220 and PS417_22225 are separated by 105 nucleotides PS417_22225 and PS417_22230 overlap by 4 nucleotides PS417_22230 and PS417_22235 are separated by 111 nucleotides
PS417_22215: PS417_22215 - membrane protein, at 4,816,252 to 4,816,563
_22215
PS417_22220: PS417_22220 - hypothetical protein, at 4,816,916 to 4,817,098
_22220
PS417_22225: PS417_22225 - MFS transporter, at 4,817,204 to 4,818,400
_22225
PS417_22230: PS417_22230 - class I peptide chain release factor, at 4,818,397 to 4,818,810
_22230
PS417_22235: PS417_22235 - aromatic amino acid transporter, at 4,818,922 to 4,820,343
_22235
Position (kb) 4817
4818
4819 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4816.291 kb on + strand, within PS417_22215 at 4816.301 kb on - strand, within PS417_22215 at 4816.301 kb on - strand, within PS417_22215 at 4816.434 kb on + strand, within PS417_22215 at 4816.435 kb on - strand, within PS417_22215 at 4816.501 kb on + strand, within PS417_22215 at 4816.529 kb on - strand, within PS417_22215 at 4816.637 kb on + strand at 4816.637 kb on + strand at 4816.638 kb on - strand at 4816.722 kb on - strand at 4816.722 kb on - strand at 4816.725 kb on + strand at 4816.726 kb on - strand at 4816.726 kb on - strand at 4816.726 kb on - strand at 4816.726 kb on - strand at 4816.752 kb on + strand at 4817.170 kb on + strand at 4817.256 kb on + strand at 4817.256 kb on + strand at 4817.257 kb on - strand at 4817.316 kb on - strand at 4817.316 kb on - strand at 4817.316 kb on - strand at 4817.375 kb on + strand, within PS417_22225 at 4817.376 kb on - strand, within PS417_22225 at 4817.835 kb on + strand, within PS417_22225 at 4817.918 kb on + strand, within PS417_22225 at 4817.918 kb on + strand, within PS417_22225 at 4817.918 kb on + strand at 4817.918 kb on + strand, within PS417_22225 at 4817.918 kb on + strand, within PS417_22225 at 4817.919 kb on - strand, within PS417_22225 at 4817.921 kb on + strand, within PS417_22225 at 4817.921 kb on + strand, within PS417_22225 at 4817.921 kb on + strand, within PS417_22225 at 4817.922 kb on - strand, within PS417_22225 at 4817.922 kb on - strand, within PS417_22225 at 4817.922 kb on - strand, within PS417_22225 at 4818.353 kb on + strand at 4818.353 kb on + strand at 4818.655 kb on - strand, within PS417_22230 at 4818.655 kb on - strand, within PS417_22230 at 4818.656 kb on + strand, within PS417_22230 at 4818.656 kb on + strand, within PS417_22230 at 4818.657 kb on - strand, within PS417_22230 at 4818.657 kb on - strand, within PS417_22230 at 4818.657 kb on - strand, within PS417_22230 at 4818.810 kb on + strand at 4818.865 kb on + strand at 4818.966 kb on + strand at 4819.097 kb on + strand, within PS417_22235 at 4819.097 kb on + strand, within PS417_22235 at 4819.097 kb on + strand, within PS417_22235 at 4819.098 kb on - strand, within PS417_22235 at 4819.098 kb on - strand, within PS417_22235 at 4819.098 kb on - strand, within PS417_22235 at 4819.098 kb on - strand, within PS417_22235 at 4819.098 kb on - strand, within PS417_22235 at 4819.098 kb on - strand, within PS417_22235 at 4819.098 kb on - strand, within PS417_22235 at 4819.098 kb on - strand, within PS417_22235 at 4819.205 kb on - strand, within PS417_22235 at 4819.262 kb on + strand, within PS417_22235 at 4819.262 kb on + strand, within PS417_22235 at 4819.262 kb on + strand, within PS417_22235
Per-strain Table
Position Strand Gene LocusTag Fraction Inosine (C) remove 4,816,291 + PS417_22215 0.12 -0.1 4,816,301 - PS417_22215 0.16 -0.5 4,816,301 - PS417_22215 0.16 +2.2 4,816,434 + PS417_22215 0.58 +0.1 4,816,435 - PS417_22215 0.59 +0.0 4,816,501 + PS417_22215 0.80 -0.2 4,816,529 - PS417_22215 0.89 -0.2 4,816,637 + -0.3 4,816,637 + +0.5 4,816,638 - +0.4 4,816,722 - -0.0 4,816,722 - +0.3 4,816,725 + -0.5 4,816,726 - +0.0 4,816,726 - -0.7 4,816,726 - +0.1 4,816,726 - -0.6 4,816,752 + -0.4 4,817,170 + +2.2 4,817,256 + -0.1 4,817,256 + +0.1 4,817,257 - +2.1 4,817,316 - -0.0 4,817,316 - -0.8 4,817,316 - -1.0 4,817,375 + PS417_22225 0.14 +0.4 4,817,376 - PS417_22225 0.14 -1.8 4,817,835 + PS417_22225 0.53 -0.0 4,817,918 + PS417_22225 0.60 +0.1 4,817,918 + PS417_22225 0.60 -0.4 4,817,918 + -2.2 4,817,918 + PS417_22225 0.60 +0.3 4,817,918 + PS417_22225 0.60 +0.2 4,817,919 - PS417_22225 0.60 +0.8 4,817,921 + PS417_22225 0.60 +0.3 4,817,921 + PS417_22225 0.60 +0.3 4,817,921 + PS417_22225 0.60 -0.3 4,817,922 - PS417_22225 0.60 -0.6 4,817,922 - PS417_22225 0.60 -0.0 4,817,922 - PS417_22225 0.60 +0.2 4,818,353 + -0.0 4,818,353 + -0.4 4,818,655 - PS417_22230 0.62 -0.2 4,818,655 - PS417_22230 0.62 -0.2 4,818,656 + PS417_22230 0.63 -0.3 4,818,656 + PS417_22230 0.63 -0.5 4,818,657 - PS417_22230 0.63 -0.1 4,818,657 - PS417_22230 0.63 +0.3 4,818,657 - PS417_22230 0.63 -1.3 4,818,810 + +2.0 4,818,865 + -0.3 4,818,966 + +0.1 4,819,097 + PS417_22235 0.12 +1.2 4,819,097 + PS417_22235 0.12 -0.5 4,819,097 + PS417_22235 0.12 +0.5 4,819,098 - PS417_22235 0.12 -0.0 4,819,098 - PS417_22235 0.12 -0.8 4,819,098 - PS417_22235 0.12 -0.9 4,819,098 - PS417_22235 0.12 +0.4 4,819,098 - PS417_22235 0.12 -0.6 4,819,098 - PS417_22235 0.12 +0.1 4,819,098 - PS417_22235 0.12 -0.2 4,819,098 - PS417_22235 0.12 -0.2 4,819,205 - PS417_22235 0.20 -0.9 4,819,262 + PS417_22235 0.24 -0.0 4,819,262 + PS417_22235 0.24 +0.4 4,819,262 + PS417_22235 0.24 -0.0
Or see this region's nucleotide sequence