Strain Fitness in Pseudomonas simiae WCS417 around PS417_21380

Experiment: Inosine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_21375 and PS417_21380 overlap by 4 nucleotidesPS417_21380 and PS417_21385 are separated by 64 nucleotidesPS417_21385 and PS417_21390 are separated by 16 nucleotides PS417_21375: PS417_21375 - ADP-ribosylglycohydrolase, at 4,643,889 to 4,644,890 _21375 PS417_21380: PS417_21380 - GntR family transcriptional regulator, at 4,644,887 to 4,645,606 _21380 PS417_21385: PS417_21385 - hypothetical protein, at 4,645,671 to 4,646,231 _21385 PS417_21390: PS417_21390 - hypothetical protein, at 4,646,248 to 4,646,853 _21390 Position (kb) 4644 4645 4646Strain fitness (log2 ratio) -1 0 1 2 3at 4644.243 kb on - strand, within PS417_21375at 4644.428 kb on + strand, within PS417_21375at 4644.429 kb on - strand, within PS417_21375at 4644.740 kb on + strand, within PS417_21375at 4644.741 kb on - strand, within PS417_21375at 4644.856 kb on + strandat 4644.951 kb on + strandat 4644.951 kb on + strandat 4644.952 kb on - strandat 4644.952 kb on - strandat 4644.952 kb on - strandat 4644.978 kb on + strand, within PS417_21380at 4644.978 kb on + strand, within PS417_21380at 4644.978 kb on + strand, within PS417_21380at 4644.978 kb on + strand, within PS417_21380at 4644.979 kb on - strand, within PS417_21380at 4644.979 kb on - strand, within PS417_21380at 4644.979 kb on - strand, within PS417_21380at 4645.091 kb on - strand, within PS417_21380at 4645.098 kb on + strand, within PS417_21380at 4645.420 kb on - strand, within PS417_21380at 4645.603 kb on - strandat 4645.771 kb on + strand, within PS417_21385at 4645.772 kb on - strand, within PS417_21385at 4645.772 kb on - strand, within PS417_21385at 4645.921 kb on - strand, within PS417_21385at 4645.921 kb on - strand, within PS417_21385at 4646.020 kb on + strand, within PS417_21385at 4646.021 kb on - strand, within PS417_21385at 4646.095 kb on + strandat 4646.163 kb on + strand, within PS417_21385at 4646.164 kb on - strand, within PS417_21385at 4646.164 kb on - strand, within PS417_21385at 4646.232 kb on - strandat 4646.249 kb on + strandat 4646.249 kb on + strandat 4646.250 kb on - strandat 4646.358 kb on + strand, within PS417_21390at 4646.367 kb on + strand, within PS417_21390at 4646.368 kb on - strand, within PS417_21390at 4646.378 kb on + strand, within PS417_21390at 4646.507 kb on + strand, within PS417_21390at 4646.508 kb on - strand, within PS417_21390at 4646.508 kb on - strand, within PS417_21390at 4646.516 kb on + strand, within PS417_21390at 4646.516 kb on + strand, within PS417_21390

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Per-strain Table

Position Strand Gene LocusTag Fraction Inosine (C)
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4,644,243 - PS417_21375 0.35 +0.4
4,644,428 + PS417_21375 0.54 +0.0
4,644,429 - PS417_21375 0.54 +0.1
4,644,740 + PS417_21375 0.85 +0.1
4,644,741 - PS417_21375 0.85 -1.6
4,644,856 + +0.1
4,644,951 + +0.4
4,644,951 + +0.7
4,644,952 - +0.6
4,644,952 - +0.3
4,644,952 - -1.2
4,644,978 + PS417_21380 0.13 +0.3
4,644,978 + PS417_21380 0.13 +1.4
4,644,978 + PS417_21380 0.13 +0.4
4,644,978 + PS417_21380 0.13 +0.7
4,644,979 - PS417_21380 0.13 +0.0
4,644,979 - PS417_21380 0.13 +0.2
4,644,979 - PS417_21380 0.13 -1.5
4,645,091 - PS417_21380 0.28 +0.5
4,645,098 + PS417_21380 0.29 +0.8
4,645,420 - PS417_21380 0.74 +0.1
4,645,603 - +0.8
4,645,771 + PS417_21385 0.18 +0.4
4,645,772 - PS417_21385 0.18 -0.0
4,645,772 - PS417_21385 0.18 +0.0
4,645,921 - PS417_21385 0.45 +0.6
4,645,921 - PS417_21385 0.45 +0.2
4,646,020 + PS417_21385 0.62 -0.2
4,646,021 - PS417_21385 0.62 -0.2
4,646,095 + +3.3
4,646,163 + PS417_21385 0.88 -0.3
4,646,164 - PS417_21385 0.88 +0.7
4,646,164 - PS417_21385 0.88 -1.7
4,646,232 - -0.3
4,646,249 + -0.1
4,646,249 + -0.0
4,646,250 - -0.1
4,646,358 + PS417_21390 0.18 -0.1
4,646,367 + PS417_21390 0.20 -0.0
4,646,368 - PS417_21390 0.20 +0.4
4,646,378 + PS417_21390 0.21 +0.9
4,646,507 + PS417_21390 0.43 +0.9
4,646,508 - PS417_21390 0.43 +0.1
4,646,508 - PS417_21390 0.43 +1.6
4,646,516 + PS417_21390 0.44 +1.4
4,646,516 + PS417_21390 0.44 +0.4

Or see this region's nucleotide sequence