Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4608

Experiment: D-Raffinose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_4606 and Echvi_4607 are separated by 119 nucleotidesEchvi_4607 and Echvi_4608 overlap by 1 nucleotidesEchvi_4608 and Echvi_4609 are separated by 97 nucleotides Echvi_4606: Echvi_4606 - Protein of unknown function (DUF2721)., at 5,515,185 to 5,515,649 _4606 Echvi_4607: Echvi_4607 - Uncharacterized protein conserved in bacteria, at 5,515,769 to 5,516,602 _4607 Echvi_4608: Echvi_4608 - RNA polymerase sigma factor, sigma-70 family, at 5,516,602 to 5,517,135 _4608 Echvi_4609: Echvi_4609 - dihydrolipoamide dehydrogenase, at 5,517,233 to 5,518,630 _4609 Position (kb) 5516 5517 5518Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5515.650 kb on - strandat 5515.672 kb on + strandat 5515.698 kb on + strandat 5515.743 kb on + strandat 5515.770 kb on + strandat 5516.003 kb on + strand, within Echvi_4607at 5516.092 kb on - strand, within Echvi_4607at 5516.092 kb on - strand, within Echvi_4607at 5516.149 kb on + strand, within Echvi_4607at 5516.174 kb on - strand, within Echvi_4607at 5516.176 kb on + strand, within Echvi_4607at 5516.176 kb on + strand, within Echvi_4607at 5516.176 kb on + strand, within Echvi_4607at 5516.176 kb on + strand, within Echvi_4607at 5516.177 kb on - strand, within Echvi_4607at 5516.177 kb on - strand, within Echvi_4607at 5516.218 kb on - strand, within Echvi_4607at 5516.218 kb on - strand, within Echvi_4607at 5516.220 kb on + strand, within Echvi_4607at 5516.221 kb on - strand, within Echvi_4607at 5516.221 kb on - strand, within Echvi_4607at 5516.221 kb on - strand, within Echvi_4607at 5516.309 kb on + strand, within Echvi_4607at 5516.310 kb on - strand, within Echvi_4607at 5516.412 kb on - strand, within Echvi_4607at 5516.573 kb on - strandat 5516.587 kb on - strandat 5516.614 kb on - strandat 5516.614 kb on - strandat 5516.616 kb on + strandat 5516.708 kb on + strand, within Echvi_4608at 5516.791 kb on + strand, within Echvi_4608at 5516.791 kb on + strand, within Echvi_4608at 5516.791 kb on + strand, within Echvi_4608at 5516.792 kb on - strand, within Echvi_4608at 5516.792 kb on - strand, within Echvi_4608at 5516.831 kb on - strand, within Echvi_4608at 5516.831 kb on - strand, within Echvi_4608at 5516.831 kb on - strand, within Echvi_4608at 5516.831 kb on - strand, within Echvi_4608at 5516.831 kb on - strand, within Echvi_4608at 5516.834 kb on + strand, within Echvi_4608at 5516.834 kb on + strand, within Echvi_4608at 5516.834 kb on + strand, within Echvi_4608at 5516.834 kb on + strand, within Echvi_4608at 5516.834 kb on + strand, within Echvi_4608at 5516.835 kb on - strand, within Echvi_4608at 5516.835 kb on - strand, within Echvi_4608at 5516.835 kb on - strand, within Echvi_4608at 5516.835 kb on - strand, within Echvi_4608at 5516.848 kb on - strand, within Echvi_4608at 5516.856 kb on + strand, within Echvi_4608at 5516.856 kb on + strand, within Echvi_4608at 5516.857 kb on - strand, within Echvi_4608at 5516.930 kb on + strand, within Echvi_4608at 5516.931 kb on - strand, within Echvi_4608at 5516.931 kb on - strand, within Echvi_4608at 5516.954 kb on + strand, within Echvi_4608at 5516.954 kb on + strand, within Echvi_4608at 5516.954 kb on + strand, within Echvi_4608at 5516.954 kb on + strand, within Echvi_4608at 5516.955 kb on - strand, within Echvi_4608at 5516.955 kb on - strand, within Echvi_4608at 5516.955 kb on - strand, within Echvi_4608at 5516.955 kb on - strand, within Echvi_4608at 5516.959 kb on - strand, within Echvi_4608at 5517.028 kb on + strand, within Echvi_4608at 5517.039 kb on + strand, within Echvi_4608at 5517.040 kb on - strand, within Echvi_4608at 5517.040 kb on - strand, within Echvi_4608at 5517.040 kb on - strand, within Echvi_4608at 5517.040 kb on - strand, within Echvi_4608at 5517.077 kb on + strand, within Echvi_4608at 5517.077 kb on + strand, within Echvi_4608at 5517.078 kb on - strand, within Echvi_4608at 5517.099 kb on + strandat 5517.107 kb on - strandat 5517.152 kb on + strandat 5517.153 kb on - strandat 5517.211 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Raffinose (C)
remove
5,515,650 - +0.2
5,515,672 + +2.0
5,515,698 + +0.4
5,515,743 + +0.0
5,515,770 + -2.3
5,516,003 + Echvi_4607 0.28 -2.0
5,516,092 - Echvi_4607 0.39 -1.5
5,516,092 - Echvi_4607 0.39 -1.4
5,516,149 + Echvi_4607 0.46 -1.9
5,516,174 - Echvi_4607 0.49 -0.5
5,516,176 + Echvi_4607 0.49 -2.6
5,516,176 + Echvi_4607 0.49 -2.6
5,516,176 + Echvi_4607 0.49 -2.6
5,516,176 + Echvi_4607 0.49 -1.1
5,516,177 - Echvi_4607 0.49 -1.4
5,516,177 - Echvi_4607 0.49 -3.1
5,516,218 - Echvi_4607 0.54 -1.2
5,516,218 - Echvi_4607 0.54 -3.2
5,516,220 + Echvi_4607 0.54 +1.0
5,516,221 - Echvi_4607 0.54 -1.9
5,516,221 - Echvi_4607 0.54 -2.5
5,516,221 - Echvi_4607 0.54 +0.2
5,516,309 + Echvi_4607 0.65 -2.2
5,516,310 - Echvi_4607 0.65 +1.0
5,516,412 - Echvi_4607 0.77 -3.1
5,516,573 - -1.6
5,516,587 - -0.4
5,516,614 - +1.2
5,516,614 - -1.5
5,516,616 + +0.4
5,516,708 + Echvi_4608 0.20 -0.6
5,516,791 + Echvi_4608 0.35 +0.4
5,516,791 + Echvi_4608 0.35 -1.6
5,516,791 + Echvi_4608 0.35 -0.3
5,516,792 - Echvi_4608 0.36 -0.2
5,516,792 - Echvi_4608 0.36 -2.4
5,516,831 - Echvi_4608 0.43 -0.2
5,516,831 - Echvi_4608 0.43 -0.4
5,516,831 - Echvi_4608 0.43 +0.8
5,516,831 - Echvi_4608 0.43 -0.3
5,516,831 - Echvi_4608 0.43 -0.4
5,516,834 + Echvi_4608 0.43 -2.1
5,516,834 + Echvi_4608 0.43 -0.9
5,516,834 + Echvi_4608 0.43 +0.2
5,516,834 + Echvi_4608 0.43 -0.0
5,516,834 + Echvi_4608 0.43 -0.7
5,516,835 - Echvi_4608 0.44 -0.5
5,516,835 - Echvi_4608 0.44 -0.5
5,516,835 - Echvi_4608 0.44 -2.1
5,516,835 - Echvi_4608 0.44 +0.5
5,516,848 - Echvi_4608 0.46 -1.6
5,516,856 + Echvi_4608 0.48 +0.6
5,516,856 + Echvi_4608 0.48 -0.2
5,516,857 - Echvi_4608 0.48 -2.7
5,516,930 + Echvi_4608 0.61 -0.4
5,516,931 - Echvi_4608 0.62 -0.3
5,516,931 - Echvi_4608 0.62 -0.4
5,516,954 + Echvi_4608 0.66 +0.5
5,516,954 + Echvi_4608 0.66 -0.3
5,516,954 + Echvi_4608 0.66 +0.2
5,516,954 + Echvi_4608 0.66 +1.4
5,516,955 - Echvi_4608 0.66 +1.2
5,516,955 - Echvi_4608 0.66 +0.4
5,516,955 - Echvi_4608 0.66 +0.4
5,516,955 - Echvi_4608 0.66 -0.6
5,516,959 - Echvi_4608 0.67 -0.2
5,517,028 + Echvi_4608 0.80 +0.1
5,517,039 + Echvi_4608 0.82 -0.8
5,517,040 - Echvi_4608 0.82 +0.1
5,517,040 - Echvi_4608 0.82 -1.5
5,517,040 - Echvi_4608 0.82 -1.0
5,517,040 - Echvi_4608 0.82 -1.5
5,517,077 + Echvi_4608 0.89 +0.7
5,517,077 + Echvi_4608 0.89 +0.3
5,517,078 - Echvi_4608 0.89 -0.8
5,517,099 + +1.1
5,517,107 - -1.0
5,517,152 + +0.6
5,517,153 - -0.5
5,517,211 + +0.8

Or see this region's nucleotide sequence