Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1111

Experiment: D-Raffinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_1110 and Echvi_1111 are separated by 623 nucleotidesEchvi_1111 and Echvi_1112 are separated by 359 nucleotides Echvi_1110: Echvi_1110 - nicotinamide mononucleotide transporter PnuC, at 1,273,128 to 1,273,748 _1110 Echvi_1111: Echvi_1111 - inosine-5'-monophosphate dehydrogenase, at 1,274,372 to 1,275,850 _1111 Echvi_1112: Echvi_1112 - Predicted permeases, at 1,276,210 to 1,277,115 _1112 Position (kb) 1274 1275 1276Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1273.376 kb on + strand, within Echvi_1110at 1273.376 kb on + strand, within Echvi_1110at 1273.378 kb on + strand, within Echvi_1110at 1273.397 kb on - strand, within Echvi_1110at 1273.408 kb on + strand, within Echvi_1110at 1273.409 kb on - strand, within Echvi_1110at 1273.422 kb on + strand, within Echvi_1110at 1273.423 kb on - strand, within Echvi_1110at 1273.423 kb on - strand, within Echvi_1110at 1273.491 kb on - strand, within Echvi_1110at 1273.491 kb on - strand, within Echvi_1110at 1273.507 kb on + strand, within Echvi_1110at 1273.507 kb on + strand, within Echvi_1110at 1273.507 kb on + strand, within Echvi_1110at 1273.508 kb on - strand, within Echvi_1110at 1273.535 kb on - strand, within Echvi_1110at 1273.535 kb on - strand, within Echvi_1110at 1273.561 kb on + strand, within Echvi_1110at 1273.591 kb on + strand, within Echvi_1110at 1273.591 kb on + strand, within Echvi_1110at 1273.592 kb on - strand, within Echvi_1110at 1273.592 kb on - strand, within Echvi_1110at 1273.592 kb on - strand, within Echvi_1110at 1273.689 kb on + strandat 1273.689 kb on + strandat 1273.829 kb on + strandat 1273.830 kb on - strandat 1273.836 kb on - strandat 1273.865 kb on + strandat 1273.866 kb on - strandat 1273.866 kb on - strandat 1273.877 kb on + strandat 1273.878 kb on - strandat 1273.881 kb on + strandat 1273.882 kb on - strandat 1273.882 kb on - strandat 1273.931 kb on - strandat 1273.941 kb on - strandat 1273.950 kb on - strandat 1273.978 kb on - strandat 1273.978 kb on - strandat 1273.980 kb on - strandat 1273.980 kb on - strandat 1273.980 kb on - strandat 1273.985 kb on - strandat 1274.133 kb on + strandat 1274.162 kb on + strandat 1274.162 kb on + strandat 1274.163 kb on - strandat 1274.163 kb on - strandat 1274.163 kb on - strandat 1274.163 kb on - strandat 1274.227 kb on + strandat 1274.228 kb on - strandat 1274.253 kb on + strandat 1274.253 kb on + strandat 1274.254 kb on - strandat 1274.254 kb on - strandat 1274.254 kb on - strandat 1274.254 kb on - strandat 1274.357 kb on - strandat 1274.359 kb on + strandat 1274.359 kb on + strandat 1274.360 kb on - strandat 1274.360 kb on - strandat 1274.360 kb on - strandat 1274.365 kb on - strandat 1274.365 kb on - strandat 1274.388 kb on + strandat 1274.389 kb on - strandat 1275.990 kb on - strandat 1276.006 kb on + strandat 1276.112 kb on + strandat 1276.112 kb on + strandat 1276.113 kb on - strandat 1276.113 kb on - strandat 1276.127 kb on - strandat 1276.217 kb on - strandat 1276.226 kb on + strandat 1276.226 kb on + strandat 1276.227 kb on - strandat 1276.369 kb on - strand, within Echvi_1112at 1276.369 kb on - strand, within Echvi_1112at 1276.369 kb on - strand, within Echvi_1112at 1276.370 kb on + strand, within Echvi_1112at 1276.370 kb on + strand, within Echvi_1112at 1276.370 kb on + strand, within Echvi_1112at 1276.371 kb on - strand, within Echvi_1112at 1276.371 kb on - strand, within Echvi_1112at 1276.371 kb on - strand, within Echvi_1112at 1276.375 kb on + strand, within Echvi_1112at 1276.375 kb on + strand, within Echvi_1112at 1276.375 kb on + strand, within Echvi_1112at 1276.375 kb on + strand, within Echvi_1112at 1276.375 kb on + strand, within Echvi_1112at 1276.375 kb on + strand, within Echvi_1112at 1276.375 kb on + strand, within Echvi_1112at 1276.375 kb on + strand, within Echvi_1112at 1276.376 kb on - strand, within Echvi_1112at 1276.376 kb on - strand, within Echvi_1112at 1276.376 kb on - strand, within Echvi_1112at 1276.376 kb on - strand, within Echvi_1112at 1276.376 kb on - strand, within Echvi_1112at 1276.376 kb on - strand, within Echvi_1112at 1276.376 kb on - strand, within Echvi_1112at 1276.376 kb on - strand, within Echvi_1112at 1276.376 kb on - strand, within Echvi_1112at 1276.376 kb on - strand, within Echvi_1112at 1276.376 kb on - strand, within Echvi_1112at 1276.376 kb on - strand, within Echvi_1112at 1276.376 kb on - strand, within Echvi_1112at 1276.376 kb on - strand, within Echvi_1112at 1276.377 kb on + strand, within Echvi_1112at 1276.377 kb on + strand, within Echvi_1112at 1276.377 kb on + strand, within Echvi_1112at 1276.377 kb on + strand, within Echvi_1112at 1276.377 kb on + strand, within Echvi_1112at 1276.378 kb on - strand, within Echvi_1112at 1276.403 kb on + strand, within Echvi_1112at 1276.409 kb on - strand, within Echvi_1112at 1276.429 kb on - strand, within Echvi_1112at 1276.429 kb on - strand, within Echvi_1112at 1276.441 kb on - strand, within Echvi_1112at 1276.447 kb on + strand, within Echvi_1112at 1276.447 kb on + strand, within Echvi_1112at 1276.448 kb on - strand, within Echvi_1112at 1276.448 kb on - strand, within Echvi_1112at 1276.448 kb on - strand, within Echvi_1112at 1276.495 kb on + strand, within Echvi_1112at 1276.495 kb on + strand, within Echvi_1112at 1276.495 kb on + strand, within Echvi_1112at 1276.582 kb on + strand, within Echvi_1112at 1276.582 kb on + strand, within Echvi_1112at 1276.583 kb on - strand, within Echvi_1112at 1276.583 kb on - strand, within Echvi_1112at 1276.583 kb on - strand, within Echvi_1112at 1276.642 kb on + strand, within Echvi_1112at 1276.653 kb on + strand, within Echvi_1112at 1276.674 kb on + strand, within Echvi_1112at 1276.675 kb on - strand, within Echvi_1112at 1276.675 kb on - strand, within Echvi_1112at 1276.685 kb on + strand, within Echvi_1112at 1276.685 kb on + strand, within Echvi_1112at 1276.685 kb on + strand, within Echvi_1112at 1276.686 kb on - strand, within Echvi_1112at 1276.686 kb on - strand, within Echvi_1112at 1276.686 kb on - strand, within Echvi_1112at 1276.807 kb on - strand, within Echvi_1112

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Raffinose (C)
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1,273,376 + Echvi_1110 0.40 -0.8
1,273,376 + Echvi_1110 0.40 +0.3
1,273,378 + Echvi_1110 0.40 -0.6
1,273,397 - Echvi_1110 0.43 -0.2
1,273,408 + Echvi_1110 0.45 +1.1
1,273,409 - Echvi_1110 0.45 -1.2
1,273,422 + Echvi_1110 0.47 -0.2
1,273,423 - Echvi_1110 0.48 +1.6
1,273,423 - Echvi_1110 0.48 -2.2
1,273,491 - Echvi_1110 0.58 +0.4
1,273,491 - Echvi_1110 0.58 -0.2
1,273,507 + Echvi_1110 0.61 +1.6
1,273,507 + Echvi_1110 0.61 +0.0
1,273,507 + Echvi_1110 0.61 -1.4
1,273,508 - Echvi_1110 0.61 +1.2
1,273,535 - Echvi_1110 0.66 -1.9
1,273,535 - Echvi_1110 0.66 -2.5
1,273,561 + Echvi_1110 0.70 -2.1
1,273,591 + Echvi_1110 0.75 +0.6
1,273,591 + Echvi_1110 0.75 -0.6
1,273,592 - Echvi_1110 0.75 -0.5
1,273,592 - Echvi_1110 0.75 -1.1
1,273,592 - Echvi_1110 0.75 +0.1
1,273,689 + +3.4
1,273,689 + -0.0
1,273,829 + -2.5
1,273,830 - +0.5
1,273,836 - +0.5
1,273,865 + +2.9
1,273,866 - +1.4
1,273,866 - -0.8
1,273,877 + +1.4
1,273,878 - +0.1
1,273,881 + -1.2
1,273,882 - -1.1
1,273,882 - +0.8
1,273,931 - +0.8
1,273,941 - -1.3
1,273,950 - -0.1
1,273,978 - -1.6
1,273,978 - +0.2
1,273,980 - -0.3
1,273,980 - -0.6
1,273,980 - -0.4
1,273,985 - -2.3
1,274,133 + +0.2
1,274,162 + +0.1
1,274,162 + -0.6
1,274,163 - +0.0
1,274,163 - -1.9
1,274,163 - -2.1
1,274,163 - -1.7
1,274,227 + +1.8
1,274,228 - +0.2
1,274,253 + -0.4
1,274,253 + -0.2
1,274,254 - -2.0
1,274,254 - -1.4
1,274,254 - +0.4
1,274,254 - -0.3
1,274,357 - +0.8
1,274,359 + -0.2
1,274,359 + +0.3
1,274,360 - -0.7
1,274,360 - -2.0
1,274,360 - +0.9
1,274,365 - -0.0
1,274,365 - -1.6
1,274,388 + -0.8
1,274,389 - -1.0
1,275,990 - +0.5
1,276,006 + +1.1
1,276,112 + +0.7
1,276,112 + -1.5
1,276,113 - -0.2
1,276,113 - -1.1
1,276,127 - +1.7
1,276,217 - -1.9
1,276,226 + +0.1
1,276,226 + -1.0
1,276,227 - +0.2
1,276,369 - Echvi_1112 0.18 -1.2
1,276,369 - Echvi_1112 0.18 +0.8
1,276,369 - Echvi_1112 0.18 +0.0
1,276,370 + Echvi_1112 0.18 +0.1
1,276,370 + Echvi_1112 0.18 +1.8
1,276,370 + Echvi_1112 0.18 +0.1
1,276,371 - Echvi_1112 0.18 -0.8
1,276,371 - Echvi_1112 0.18 -0.1
1,276,371 - Echvi_1112 0.18 +0.6
1,276,375 + Echvi_1112 0.18 -0.6
1,276,375 + Echvi_1112 0.18 +1.3
1,276,375 + Echvi_1112 0.18 -0.3
1,276,375 + Echvi_1112 0.18 +0.4
1,276,375 + Echvi_1112 0.18 -0.9
1,276,375 + Echvi_1112 0.18 -1.8
1,276,375 + Echvi_1112 0.18 +1.4
1,276,375 + Echvi_1112 0.18 +0.5
1,276,376 - Echvi_1112 0.18 +1.6
1,276,376 - Echvi_1112 0.18 +0.1
1,276,376 - Echvi_1112 0.18 -0.2
1,276,376 - Echvi_1112 0.18 -1.1
1,276,376 - Echvi_1112 0.18 -0.5
1,276,376 - Echvi_1112 0.18 +0.5
1,276,376 - Echvi_1112 0.18 -0.1
1,276,376 - Echvi_1112 0.18 -1.6
1,276,376 - Echvi_1112 0.18 -1.8
1,276,376 - Echvi_1112 0.18 +1.3
1,276,376 - Echvi_1112 0.18 +1.3
1,276,376 - Echvi_1112 0.18 -1.7
1,276,376 - Echvi_1112 0.18 +0.3
1,276,376 - Echvi_1112 0.18 +0.3
1,276,377 + Echvi_1112 0.18 -0.2
1,276,377 + Echvi_1112 0.18 +0.4
1,276,377 + Echvi_1112 0.18 -0.2
1,276,377 + Echvi_1112 0.18 +0.7
1,276,377 + Echvi_1112 0.18 +1.2
1,276,378 - Echvi_1112 0.19 +0.5
1,276,403 + Echvi_1112 0.21 -1.3
1,276,409 - Echvi_1112 0.22 -0.1
1,276,429 - Echvi_1112 0.24 +1.0
1,276,429 - Echvi_1112 0.24 -1.3
1,276,441 - Echvi_1112 0.25 -0.1
1,276,447 + Echvi_1112 0.26 -0.1
1,276,447 + Echvi_1112 0.26 +1.6
1,276,448 - Echvi_1112 0.26 +0.8
1,276,448 - Echvi_1112 0.26 +1.0
1,276,448 - Echvi_1112 0.26 +0.8
1,276,495 + Echvi_1112 0.31 +0.0
1,276,495 + Echvi_1112 0.31 +0.9
1,276,495 + Echvi_1112 0.31 +0.3
1,276,582 + Echvi_1112 0.41 +0.4
1,276,582 + Echvi_1112 0.41 +0.5
1,276,583 - Echvi_1112 0.41 -0.0
1,276,583 - Echvi_1112 0.41 -1.0
1,276,583 - Echvi_1112 0.41 +0.6
1,276,642 + Echvi_1112 0.48 +0.8
1,276,653 + Echvi_1112 0.49 +0.3
1,276,674 + Echvi_1112 0.51 -0.7
1,276,675 - Echvi_1112 0.51 -0.2
1,276,675 - Echvi_1112 0.51 -0.2
1,276,685 + Echvi_1112 0.52 +0.1
1,276,685 + Echvi_1112 0.52 +0.0
1,276,685 + Echvi_1112 0.52 +1.0
1,276,686 - Echvi_1112 0.53 +0.0
1,276,686 - Echvi_1112 0.53 -0.1
1,276,686 - Echvi_1112 0.53 -1.8
1,276,807 - Echvi_1112 0.66 -1.6

Or see this region's nucleotide sequence