Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0282

Experiment: D-Raffinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0281 and Echvi_0282 are separated by 101 nucleotidesEchvi_0282 and Echvi_0283 are separated by 21 nucleotides Echvi_0281: Echvi_0281 - SusD family., at 289,266 to 291,128 _0281 Echvi_0282: Echvi_0282 - ASPIC and UnbV., at 291,230 to 294,565 _0282 Echvi_0283: Echvi_0283 - PAP2 superfamily., at 294,587 to 295,933 _0283 Position (kb) 291 292 293 294 295Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 290.319 kb on + strand, within Echvi_0281at 290.380 kb on - strand, within Echvi_0281at 290.558 kb on + strand, within Echvi_0281at 290.558 kb on + strand, within Echvi_0281at 290.581 kb on - strand, within Echvi_0281at 290.583 kb on - strand, within Echvi_0281at 290.592 kb on + strand, within Echvi_0281at 290.593 kb on - strand, within Echvi_0281at 290.625 kb on - strand, within Echvi_0281at 290.639 kb on + strand, within Echvi_0281at 290.694 kb on + strand, within Echvi_0281at 290.695 kb on - strand, within Echvi_0281at 290.699 kb on - strand, within Echvi_0281at 290.844 kb on + strand, within Echvi_0281at 290.845 kb on - strand, within Echvi_0281at 290.991 kb on + strandat 290.991 kb on + strandat 291.014 kb on - strandat 291.165 kb on + strandat 291.165 kb on + strandat 291.166 kb on - strandat 291.166 kb on - strandat 291.166 kb on - strandat 291.187 kb on + strandat 291.200 kb on + strandat 291.204 kb on + strandat 291.223 kb on + strandat 291.223 kb on + strandat 291.223 kb on + strandat 291.223 kb on + strandat 291.223 kb on + strandat 291.223 kb on + strandat 291.224 kb on - strandat 291.230 kb on - strandat 291.235 kb on + strandat 291.235 kb on + strandat 291.235 kb on + strandat 291.240 kb on + strandat 291.240 kb on + strandat 291.285 kb on + strandat 291.286 kb on - strandat 291.292 kb on + strandat 291.292 kb on + strandat 291.292 kb on + strandat 291.293 kb on - strandat 291.417 kb on - strandat 291.417 kb on - strandat 291.486 kb on - strandat 291.554 kb on - strandat 291.642 kb on + strand, within Echvi_0282at 291.644 kb on + strand, within Echvi_0282at 291.644 kb on + strand, within Echvi_0282at 291.644 kb on + strand, within Echvi_0282at 291.644 kb on + strand, within Echvi_0282at 291.644 kb on + strand, within Echvi_0282at 291.644 kb on + strand, within Echvi_0282at 291.645 kb on - strand, within Echvi_0282at 291.645 kb on - strand, within Echvi_0282at 291.645 kb on - strand, within Echvi_0282at 291.654 kb on - strand, within Echvi_0282at 291.755 kb on + strand, within Echvi_0282at 291.776 kb on - strand, within Echvi_0282at 291.957 kb on + strand, within Echvi_0282at 292.049 kb on + strand, within Echvi_0282at 292.050 kb on - strand, within Echvi_0282at 292.050 kb on - strand, within Echvi_0282at 292.050 kb on - strand, within Echvi_0282at 292.064 kb on + strand, within Echvi_0282at 292.064 kb on + strand, within Echvi_0282at 292.085 kb on + strand, within Echvi_0282at 292.090 kb on + strand, within Echvi_0282at 292.090 kb on + strand, within Echvi_0282at 292.091 kb on - strand, within Echvi_0282at 292.142 kb on - strand, within Echvi_0282at 292.142 kb on - strand, within Echvi_0282at 292.142 kb on - strand, within Echvi_0282at 292.142 kb on - strand, within Echvi_0282at 292.208 kb on - strand, within Echvi_0282at 292.216 kb on + strand, within Echvi_0282at 292.269 kb on - strand, within Echvi_0282at 292.313 kb on + strand, within Echvi_0282at 292.314 kb on - strand, within Echvi_0282at 292.314 kb on - strand, within Echvi_0282at 292.316 kb on - strand, within Echvi_0282at 292.452 kb on - strand, within Echvi_0282at 292.452 kb on - strand, within Echvi_0282at 292.452 kb on - strand, within Echvi_0282at 292.466 kb on + strand, within Echvi_0282at 292.514 kb on + strand, within Echvi_0282at 292.514 kb on + strand, within Echvi_0282at 292.514 kb on + strand, within Echvi_0282at 292.514 kb on + strand, within Echvi_0282at 292.515 kb on - strand, within Echvi_0282at 292.598 kb on + strand, within Echvi_0282at 292.598 kb on + strand, within Echvi_0282at 292.599 kb on - strand, within Echvi_0282at 292.599 kb on - strand, within Echvi_0282at 292.662 kb on - strand, within Echvi_0282at 292.754 kb on - strand, within Echvi_0282at 292.754 kb on - strand, within Echvi_0282at 292.832 kb on + strand, within Echvi_0282at 292.858 kb on - strand, within Echvi_0282at 292.880 kb on + strand, within Echvi_0282at 292.977 kb on + strand, within Echvi_0282at 293.016 kb on + strand, within Echvi_0282at 293.016 kb on + strand, within Echvi_0282at 293.124 kb on + strand, within Echvi_0282at 293.125 kb on - strand, within Echvi_0282at 293.125 kb on - strand, within Echvi_0282at 293.242 kb on + strand, within Echvi_0282at 293.246 kb on + strand, within Echvi_0282at 293.247 kb on - strand, within Echvi_0282at 293.247 kb on - strand, within Echvi_0282at 293.271 kb on + strand, within Echvi_0282at 293.272 kb on - strand, within Echvi_0282at 293.403 kb on + strand, within Echvi_0282at 293.404 kb on - strand, within Echvi_0282at 293.404 kb on - strand, within Echvi_0282at 293.404 kb on - strand, within Echvi_0282at 293.404 kb on - strand, within Echvi_0282at 293.405 kb on + strand, within Echvi_0282at 293.405 kb on + strand, within Echvi_0282at 293.406 kb on - strand, within Echvi_0282at 293.406 kb on - strand, within Echvi_0282at 293.469 kb on - strand, within Echvi_0282at 293.559 kb on + strand, within Echvi_0282at 293.560 kb on - strand, within Echvi_0282at 293.615 kb on + strand, within Echvi_0282at 293.636 kb on + strand, within Echvi_0282at 293.719 kb on + strand, within Echvi_0282at 293.843 kb on + strand, within Echvi_0282at 293.844 kb on - strand, within Echvi_0282at 293.851 kb on + strand, within Echvi_0282at 293.859 kb on - strand, within Echvi_0282at 293.876 kb on - strand, within Echvi_0282at 293.987 kb on + strand, within Echvi_0282at 294.027 kb on + strand, within Echvi_0282at 294.027 kb on + strand, within Echvi_0282at 294.035 kb on + strand, within Echvi_0282at 294.035 kb on + strand, within Echvi_0282at 294.036 kb on - strand, within Echvi_0282at 294.059 kb on + strand, within Echvi_0282at 294.059 kb on + strand, within Echvi_0282at 294.059 kb on + strand, within Echvi_0282at 294.059 kb on + strand, within Echvi_0282at 294.060 kb on - strand, within Echvi_0282at 294.060 kb on - strand, within Echvi_0282at 294.060 kb on - strand, within Echvi_0282at 294.120 kb on - strand, within Echvi_0282at 294.121 kb on + strand, within Echvi_0282at 294.121 kb on + strand, within Echvi_0282at 294.121 kb on + strand, within Echvi_0282at 294.122 kb on - strand, within Echvi_0282at 294.122 kb on - strand, within Echvi_0282at 294.128 kb on + strand, within Echvi_0282at 294.129 kb on - strand, within Echvi_0282at 294.129 kb on - strand, within Echvi_0282at 294.254 kb on - strandat 294.380 kb on + strandat 294.380 kb on + strandat 294.381 kb on - strandat 294.381 kb on - strandat 294.543 kb on - strandat 294.569 kb on - strandat 294.609 kb on + strandat 294.609 kb on + strandat 294.612 kb on + strandat 294.612 kb on + strandat 294.612 kb on + strandat 294.612 kb on + strandat 294.612 kb on + strandat 294.615 kb on - strandat 294.615 kb on - strandat 294.700 kb on - strandat 294.739 kb on + strand, within Echvi_0283at 294.739 kb on + strand, within Echvi_0283at 294.770 kb on + strand, within Echvi_0283at 294.770 kb on + strand, within Echvi_0283at 294.771 kb on - strand, within Echvi_0283at 294.841 kb on + strand, within Echvi_0283at 295.088 kb on + strand, within Echvi_0283at 295.090 kb on + strand, within Echvi_0283at 295.091 kb on - strand, within Echvi_0283at 295.102 kb on + strand, within Echvi_0283at 295.106 kb on + strand, within Echvi_0283at 295.184 kb on + strand, within Echvi_0283at 295.185 kb on - strand, within Echvi_0283at 295.302 kb on - strand, within Echvi_0283at 295.302 kb on - strand, within Echvi_0283at 295.308 kb on + strand, within Echvi_0283at 295.309 kb on - strand, within Echvi_0283at 295.309 kb on - strand, within Echvi_0283at 295.309 kb on - strand, within Echvi_0283at 295.309 kb on - strand, within Echvi_0283at 295.508 kb on - strand, within Echvi_0283

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Raffinose (C)
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290,319 + Echvi_0281 0.57 -1.3
290,380 - Echvi_0281 0.60 +0.3
290,558 + Echvi_0281 0.69 -1.1
290,558 + Echvi_0281 0.69 -0.8
290,581 - Echvi_0281 0.71 -0.3
290,583 - Echvi_0281 0.71 +1.1
290,592 + Echvi_0281 0.71 +0.9
290,593 - Echvi_0281 0.71 +0.5
290,625 - Echvi_0281 0.73 +1.3
290,639 + Echvi_0281 0.74 -0.1
290,694 + Echvi_0281 0.77 -0.1
290,695 - Echvi_0281 0.77 -1.1
290,699 - Echvi_0281 0.77 +0.8
290,844 + Echvi_0281 0.85 +0.3
290,845 - Echvi_0281 0.85 -0.5
290,991 + +0.4
290,991 + -0.5
291,014 - -3.6
291,165 + -0.4
291,165 + -0.7
291,166 - +0.6
291,166 - -0.0
291,166 - +0.3
291,187 + -0.3
291,200 + +0.2
291,204 + +0.3
291,223 + +0.3
291,223 + +1.0
291,223 + +0.3
291,223 + -0.1
291,223 + +1.4
291,223 + -2.4
291,224 - -1.0
291,230 - -0.7
291,235 + -1.4
291,235 + -1.5
291,235 + +1.1
291,240 + -2.5
291,240 + +1.0
291,285 + +0.7
291,286 - -1.0
291,292 + +0.5
291,292 + +1.5
291,292 + -0.7
291,293 - -1.9
291,417 - -0.9
291,417 - +1.1
291,486 - -0.0
291,554 - -3.2
291,642 + Echvi_0282 0.12 -0.7
291,644 + Echvi_0282 0.12 +1.6
291,644 + Echvi_0282 0.12 +0.2
291,644 + Echvi_0282 0.12 -1.0
291,644 + Echvi_0282 0.12 -1.7
291,644 + Echvi_0282 0.12 +0.0
291,644 + Echvi_0282 0.12 +0.4
291,645 - Echvi_0282 0.12 -0.2
291,645 - Echvi_0282 0.12 -0.2
291,645 - Echvi_0282 0.12 -0.4
291,654 - Echvi_0282 0.13 -0.9
291,755 + Echvi_0282 0.16 -0.8
291,776 - Echvi_0282 0.16 -1.2
291,957 + Echvi_0282 0.22 -0.3
292,049 + Echvi_0282 0.25 -1.3
292,050 - Echvi_0282 0.25 -1.3
292,050 - Echvi_0282 0.25 -0.6
292,050 - Echvi_0282 0.25 -1.0
292,064 + Echvi_0282 0.25 -2.1
292,064 + Echvi_0282 0.25 +1.2
292,085 + Echvi_0282 0.26 +0.8
292,090 + Echvi_0282 0.26 -0.4
292,090 + Echvi_0282 0.26 -2.0
292,091 - Echvi_0282 0.26 +0.7
292,142 - Echvi_0282 0.27 -1.8
292,142 - Echvi_0282 0.27 -0.2
292,142 - Echvi_0282 0.27 -0.1
292,142 - Echvi_0282 0.27 -0.3
292,208 - Echvi_0282 0.29 +0.2
292,216 + Echvi_0282 0.30 -1.9
292,269 - Echvi_0282 0.31 -2.0
292,313 + Echvi_0282 0.32 -1.1
292,314 - Echvi_0282 0.32 -0.6
292,314 - Echvi_0282 0.32 +0.2
292,316 - Echvi_0282 0.33 +0.1
292,452 - Echvi_0282 0.37 -2.0
292,452 - Echvi_0282 0.37 -0.7
292,452 - Echvi_0282 0.37 +0.4
292,466 + Echvi_0282 0.37 +1.7
292,514 + Echvi_0282 0.38 -0.3
292,514 + Echvi_0282 0.38 +0.3
292,514 + Echvi_0282 0.38 -0.6
292,514 + Echvi_0282 0.38 -1.3
292,515 - Echvi_0282 0.39 -0.4
292,598 + Echvi_0282 0.41 -1.5
292,598 + Echvi_0282 0.41 +0.2
292,599 - Echvi_0282 0.41 +0.6
292,599 - Echvi_0282 0.41 -0.9
292,662 - Echvi_0282 0.43 -0.4
292,754 - Echvi_0282 0.46 +0.7
292,754 - Echvi_0282 0.46 -1.7
292,832 + Echvi_0282 0.48 -1.5
292,858 - Echvi_0282 0.49 -2.0
292,880 + Echvi_0282 0.49 +1.0
292,977 + Echvi_0282 0.52 -0.7
293,016 + Echvi_0282 0.54 -1.1
293,016 + Echvi_0282 0.54 -0.8
293,124 + Echvi_0282 0.57 -0.5
293,125 - Echvi_0282 0.57 +0.4
293,125 - Echvi_0282 0.57 +0.2
293,242 + Echvi_0282 0.60 +1.3
293,246 + Echvi_0282 0.60 +0.1
293,247 - Echvi_0282 0.60 -0.5
293,247 - Echvi_0282 0.60 +0.1
293,271 + Echvi_0282 0.61 -0.8
293,272 - Echvi_0282 0.61 +0.1
293,403 + Echvi_0282 0.65 -1.4
293,404 - Echvi_0282 0.65 -0.0
293,404 - Echvi_0282 0.65 -0.2
293,404 - Echvi_0282 0.65 -0.3
293,404 - Echvi_0282 0.65 -0.5
293,405 + Echvi_0282 0.65 +0.3
293,405 + Echvi_0282 0.65 -1.9
293,406 - Echvi_0282 0.65 +0.7
293,406 - Echvi_0282 0.65 -0.9
293,469 - Echvi_0282 0.67 -2.7
293,559 + Echvi_0282 0.70 +0.6
293,560 - Echvi_0282 0.70 +1.4
293,615 + Echvi_0282 0.71 +0.0
293,636 + Echvi_0282 0.72 +0.5
293,719 + Echvi_0282 0.75 -4.1
293,843 + Echvi_0282 0.78 +0.1
293,844 - Echvi_0282 0.78 +1.5
293,851 + Echvi_0282 0.79 -2.9
293,859 - Echvi_0282 0.79 +0.5
293,876 - Echvi_0282 0.79 -0.2
293,987 + Echvi_0282 0.83 -1.1
294,027 + Echvi_0282 0.84 -0.3
294,027 + Echvi_0282 0.84 +1.3
294,035 + Echvi_0282 0.84 -0.1
294,035 + Echvi_0282 0.84 +1.0
294,036 - Echvi_0282 0.84 -1.1
294,059 + Echvi_0282 0.85 -0.4
294,059 + Echvi_0282 0.85 +1.8
294,059 + Echvi_0282 0.85 +0.6
294,059 + Echvi_0282 0.85 +0.0
294,060 - Echvi_0282 0.85 +1.7
294,060 - Echvi_0282 0.85 -0.3
294,060 - Echvi_0282 0.85 +1.0
294,120 - Echvi_0282 0.87 +0.7
294,121 + Echvi_0282 0.87 -2.0
294,121 + Echvi_0282 0.87 +0.7
294,121 + Echvi_0282 0.87 -0.7
294,122 - Echvi_0282 0.87 -0.1
294,122 - Echvi_0282 0.87 +0.5
294,128 + Echvi_0282 0.87 +0.7
294,129 - Echvi_0282 0.87 -0.4
294,129 - Echvi_0282 0.87 -0.0
294,254 - -1.4
294,380 + -1.0
294,380 + +1.1
294,381 - -0.5
294,381 - +0.7
294,543 - -0.8
294,569 - +0.3
294,609 + +0.7
294,609 + -1.5
294,612 + -1.0
294,612 + -0.3
294,612 + -1.1
294,612 + -1.1
294,612 + +0.1
294,615 - -0.2
294,615 - +0.0
294,700 - -0.7
294,739 + Echvi_0283 0.11 +0.9
294,739 + Echvi_0283 0.11 +0.5
294,770 + Echvi_0283 0.14 -0.5
294,770 + Echvi_0283 0.14 -0.5
294,771 - Echvi_0283 0.14 -0.5
294,841 + Echvi_0283 0.19 -0.6
295,088 + Echvi_0283 0.37 +0.8
295,090 + Echvi_0283 0.37 -2.2
295,091 - Echvi_0283 0.37 -1.1
295,102 + Echvi_0283 0.38 -0.0
295,106 + Echvi_0283 0.39 +1.1
295,184 + Echvi_0283 0.44 +0.1
295,185 - Echvi_0283 0.44 +0.8
295,302 - Echvi_0283 0.53 +1.3
295,302 - Echvi_0283 0.53 +0.4
295,308 + Echvi_0283 0.54 +0.3
295,309 - Echvi_0283 0.54 +0.4
295,309 - Echvi_0283 0.54 -0.5
295,309 - Echvi_0283 0.54 +0.1
295,309 - Echvi_0283 0.54 -1.8
295,508 - Echvi_0283 0.68 +0.6

Or see this region's nucleotide sequence