Experiment: m.b. Tetracycline 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_20215 and CA264_20220 are separated by 18 nucleotides CA264_20220 and CA264_20225 are separated by 177 nucleotides CA264_20225 and CA264_20230 are separated by 416 nucleotides CA264_20230 and CA264_20235 are separated by 168 nucleotides
CA264_20215: CA264_20215 - hypothetical protein, at 4,666,420 to 4,667,133
_20215
CA264_20220: CA264_20220 - phosphatase PAP2 family protein, at 4,667,152 to 4,667,937
_20220
CA264_20225: CA264_20225 - hypothetical protein, at 4,668,115 to 4,668,990
_20225
CA264_20230: CA264_20230 - hypothetical protein, at 4,669,407 to 4,669,598
_20230
CA264_20235: CA264_20235 - transcriptional regulator, at 4,669,767 to 4,670,159
_20235
Position (kb)
4668
4669 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4667.124 kb on + strand at 4667.131 kb on + strand at 4667.132 kb on - strand at 4667.140 kb on - strand at 4667.177 kb on + strand at 4667.193 kb on + strand at 4667.309 kb on + strand, within CA264_20220 at 4667.309 kb on + strand, within CA264_20220 at 4667.329 kb on - strand, within CA264_20220 at 4667.455 kb on + strand, within CA264_20220 at 4667.461 kb on - strand, within CA264_20220 at 4667.493 kb on + strand, within CA264_20220 at 4667.493 kb on + strand, within CA264_20220 at 4667.525 kb on + strand, within CA264_20220 at 4667.580 kb on + strand, within CA264_20220 at 4667.641 kb on + strand, within CA264_20220 at 4667.641 kb on + strand, within CA264_20220 at 4667.641 kb on + strand, within CA264_20220 at 4667.642 kb on - strand, within CA264_20220 at 4667.642 kb on - strand, within CA264_20220 at 4667.648 kb on + strand, within CA264_20220 at 4667.649 kb on - strand, within CA264_20220 at 4667.649 kb on - strand, within CA264_20220 at 4667.713 kb on - strand, within CA264_20220 at 4667.713 kb on - strand, within CA264_20220 at 4667.720 kb on + strand, within CA264_20220 at 4667.720 kb on + strand, within CA264_20220 at 4667.723 kb on - strand, within CA264_20220 at 4667.741 kb on + strand, within CA264_20220 at 4667.741 kb on + strand, within CA264_20220 at 4667.742 kb on - strand, within CA264_20220 at 4667.779 kb on + strand, within CA264_20220 at 4667.786 kb on + strand, within CA264_20220 at 4667.789 kb on + strand, within CA264_20220 at 4667.789 kb on + strand, within CA264_20220 at 4667.809 kb on + strand, within CA264_20220 at 4667.882 kb on + strand at 4667.943 kb on + strand at 4667.944 kb on - strand at 4668.031 kb on - strand at 4668.072 kb on + strand at 4668.082 kb on + strand at 4668.083 kb on - strand at 4668.083 kb on - strand at 4668.083 kb on - strand at 4668.124 kb on + strand at 4668.124 kb on + strand at 4668.125 kb on - strand at 4668.125 kb on - strand at 4668.125 kb on - strand at 4668.216 kb on + strand, within CA264_20225 at 4668.224 kb on + strand, within CA264_20225 at 4668.224 kb on + strand, within CA264_20225 at 4668.224 kb on + strand, within CA264_20225 at 4668.225 kb on - strand, within CA264_20225 at 4668.225 kb on - strand, within CA264_20225 at 4668.225 kb on - strand, within CA264_20225 at 4668.228 kb on - strand, within CA264_20225 at 4668.253 kb on + strand, within CA264_20225 at 4668.253 kb on + strand, within CA264_20225 at 4668.254 kb on - strand, within CA264_20225 at 4668.274 kb on - strand, within CA264_20225 at 4668.274 kb on - strand, within CA264_20225 at 4668.274 kb on - strand, within CA264_20225 at 4668.276 kb on - strand, within CA264_20225 at 4668.297 kb on + strand, within CA264_20225 at 4668.297 kb on + strand, within CA264_20225 at 4668.302 kb on - strand, within CA264_20225 at 4668.302 kb on - strand, within CA264_20225 at 4668.313 kb on - strand, within CA264_20225 at 4668.320 kb on - strand, within CA264_20225 at 4668.386 kb on - strand, within CA264_20225 at 4668.410 kb on + strand, within CA264_20225 at 4668.410 kb on + strand, within CA264_20225 at 4668.411 kb on - strand, within CA264_20225 at 4668.411 kb on - strand, within CA264_20225 at 4668.411 kb on - strand, within CA264_20225 at 4668.523 kb on + strand, within CA264_20225 at 4668.557 kb on + strand, within CA264_20225 at 4668.601 kb on + strand, within CA264_20225 at 4668.603 kb on + strand, within CA264_20225 at 4668.603 kb on + strand, within CA264_20225 at 4668.603 kb on + strand, within CA264_20225 at 4668.604 kb on - strand, within CA264_20225 at 4668.609 kb on + strand, within CA264_20225 at 4668.804 kb on - strand, within CA264_20225 at 4668.833 kb on + strand, within CA264_20225 at 4668.834 kb on - strand, within CA264_20225 at 4668.875 kb on + strand, within CA264_20225 at 4668.876 kb on - strand, within CA264_20225 at 4668.880 kb on + strand, within CA264_20225 at 4668.881 kb on - strand, within CA264_20225 at 4668.887 kb on - strand, within CA264_20225 at 4668.936 kb on + strand at 4668.936 kb on + strand at 4668.937 kb on - strand at 4668.981 kb on - strand at 4668.993 kb on + strand at 4669.022 kb on + strand at 4669.023 kb on - strand at 4669.023 kb on - strand at 4669.026 kb on + strand at 4669.026 kb on + strand at 4669.026 kb on + strand at 4669.027 kb on - strand at 4669.027 kb on - strand at 4669.058 kb on - strand at 4669.084 kb on + strand at 4669.116 kb on + strand at 4669.163 kb on + strand at 4669.186 kb on - strand at 4669.189 kb on + strand at 4669.189 kb on + strand at 4669.189 kb on + strand at 4669.189 kb on + strand at 4669.265 kb on + strand at 4669.269 kb on + strand at 4669.269 kb on + strand at 4669.273 kb on + strand at 4669.273 kb on + strand at 4669.274 kb on - strand at 4669.274 kb on - strand at 4669.274 kb on - strand at 4669.274 kb on - strand at 4669.274 kb on - strand at 4669.274 kb on - strand at 4669.274 kb on - strand at 4669.315 kb on + strand at 4669.315 kb on + strand at 4669.315 kb on + strand at 4669.316 kb on - strand at 4669.316 kb on - strand at 4669.317 kb on + strand at 4669.317 kb on + strand at 4669.317 kb on + strand at 4669.422 kb on - strand at 4669.422 kb on - strand at 4669.665 kb on + strand at 4669.665 kb on + strand at 4669.665 kb on + strand at 4669.665 kb on + strand at 4669.666 kb on - strand at 4669.666 kb on - strand at 4669.669 kb on + strand at 4669.670 kb on - strand at 4669.670 kb on - strand at 4669.670 kb on - strand at 4669.679 kb on + strand at 4669.679 kb on + strand at 4669.680 kb on - strand at 4669.680 kb on - strand at 4669.680 kb on - strand at 4669.682 kb on - strand at 4669.823 kb on - strand, within CA264_20235 at 4669.833 kb on - strand, within CA264_20235 at 4669.871 kb on + strand, within CA264_20235 at 4669.912 kb on + strand, within CA264_20235 at 4669.916 kb on + strand, within CA264_20235
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.003 mg/ml remove 4,667,124 + -1.0 4,667,131 + -1.5 4,667,132 - +0.1 4,667,140 - -0.8 4,667,177 + +1.0 4,667,193 + -1.1 4,667,309 + CA264_20220 0.20 +0.7 4,667,309 + CA264_20220 0.20 -0.2 4,667,329 - CA264_20220 0.23 +0.9 4,667,455 + CA264_20220 0.39 -0.1 4,667,461 - CA264_20220 0.39 +0.3 4,667,493 + CA264_20220 0.43 -0.4 4,667,493 + CA264_20220 0.43 -0.0 4,667,525 + CA264_20220 0.47 -0.2 4,667,580 + CA264_20220 0.54 -0.5 4,667,641 + CA264_20220 0.62 -0.4 4,667,641 + CA264_20220 0.62 -0.1 4,667,641 + CA264_20220 0.62 +0.1 4,667,642 - CA264_20220 0.62 -0.1 4,667,642 - CA264_20220 0.62 +0.1 4,667,648 + CA264_20220 0.63 +0.5 4,667,649 - CA264_20220 0.63 -0.0 4,667,649 - CA264_20220 0.63 +0.0 4,667,713 - CA264_20220 0.71 -0.4 4,667,713 - CA264_20220 0.71 +1.0 4,667,720 + CA264_20220 0.72 +0.5 4,667,720 + CA264_20220 0.72 +0.8 4,667,723 - CA264_20220 0.73 -1.2 4,667,741 + CA264_20220 0.75 +0.2 4,667,741 + CA264_20220 0.75 +0.1 4,667,742 - CA264_20220 0.75 -0.4 4,667,779 + CA264_20220 0.80 +0.5 4,667,786 + CA264_20220 0.81 -0.1 4,667,789 + CA264_20220 0.81 -0.1 4,667,789 + CA264_20220 0.81 -0.4 4,667,809 + CA264_20220 0.84 +0.4 4,667,882 + +0.5 4,667,943 + +0.8 4,667,944 - +0.3 4,668,031 - +0.2 4,668,072 + -0.0 4,668,082 + +0.5 4,668,083 - -0.5 4,668,083 - -0.9 4,668,083 - +1.1 4,668,124 + -0.3 4,668,124 + -0.0 4,668,125 - -0.3 4,668,125 - -0.1 4,668,125 - +0.5 4,668,216 + CA264_20225 0.12 +0.4 4,668,224 + CA264_20225 0.12 -0.3 4,668,224 + CA264_20225 0.12 -0.6 4,668,224 + CA264_20225 0.12 +0.2 4,668,225 - CA264_20225 0.13 -0.7 4,668,225 - CA264_20225 0.13 -0.0 4,668,225 - CA264_20225 0.13 -0.6 4,668,228 - CA264_20225 0.13 +0.1 4,668,253 + CA264_20225 0.16 -0.8 4,668,253 + CA264_20225 0.16 +0.5 4,668,254 - CA264_20225 0.16 -1.9 4,668,274 - CA264_20225 0.18 -0.5 4,668,274 - CA264_20225 0.18 -0.1 4,668,274 - CA264_20225 0.18 -0.6 4,668,276 - CA264_20225 0.18 -0.6 4,668,297 + CA264_20225 0.21 +0.1 4,668,297 + CA264_20225 0.21 +0.2 4,668,302 - CA264_20225 0.21 +0.1 4,668,302 - CA264_20225 0.21 -0.2 4,668,313 - CA264_20225 0.23 +0.2 4,668,320 - CA264_20225 0.23 +0.4 4,668,386 - CA264_20225 0.31 +0.2 4,668,410 + CA264_20225 0.34 +0.7 4,668,410 + CA264_20225 0.34 -0.1 4,668,411 - CA264_20225 0.34 -0.2 4,668,411 - CA264_20225 0.34 +0.3 4,668,411 - CA264_20225 0.34 -0.3 4,668,523 + CA264_20225 0.47 +0.5 4,668,557 + CA264_20225 0.50 +1.2 4,668,601 + CA264_20225 0.55 +0.1 4,668,603 + CA264_20225 0.56 +0.2 4,668,603 + CA264_20225 0.56 +0.2 4,668,603 + CA264_20225 0.56 +0.2 4,668,604 - CA264_20225 0.56 +0.3 4,668,609 + CA264_20225 0.56 -0.3 4,668,804 - CA264_20225 0.79 -0.7 4,668,833 + CA264_20225 0.82 -0.4 4,668,834 - CA264_20225 0.82 -0.2 4,668,875 + CA264_20225 0.87 -0.2 4,668,876 - CA264_20225 0.87 +0.1 4,668,880 + CA264_20225 0.87 -0.2 4,668,881 - CA264_20225 0.87 +0.1 4,668,887 - CA264_20225 0.88 +0.4 4,668,936 + +2.4 4,668,936 + -0.4 4,668,937 - -0.2 4,668,981 - +0.8 4,668,993 + -0.4 4,669,022 + +0.4 4,669,023 - +0.2 4,669,023 - -1.1 4,669,026 + -0.1 4,669,026 + +0.4 4,669,026 + +1.2 4,669,027 - -0.3 4,669,027 - -0.0 4,669,058 - +0.1 4,669,084 + +0.1 4,669,116 + +0.2 4,669,163 + -0.1 4,669,186 - -1.0 4,669,189 + -0.5 4,669,189 + +0.4 4,669,189 + -0.1 4,669,189 + +0.5 4,669,265 + -0.7 4,669,269 + -0.0 4,669,269 + -0.1 4,669,273 + -0.2 4,669,273 + +0.7 4,669,274 - -0.6 4,669,274 - -0.3 4,669,274 - -0.2 4,669,274 - -0.3 4,669,274 - -0.4 4,669,274 - -1.0 4,669,274 - -0.5 4,669,315 + -0.5 4,669,315 + -1.0 4,669,315 + +0.0 4,669,316 - -0.7 4,669,316 - +0.1 4,669,317 + +0.4 4,669,317 + -0.4 4,669,317 + -1.5 4,669,422 - -0.4 4,669,422 - -0.2 4,669,665 + -0.3 4,669,665 + -0.7 4,669,665 + +0.8 4,669,665 + -0.1 4,669,666 - +0.3 4,669,666 - +0.2 4,669,669 + -0.6 4,669,670 - +0.3 4,669,670 - +0.0 4,669,670 - -0.3 4,669,679 + +0.2 4,669,679 + +0.2 4,669,680 - -1.7 4,669,680 - +0.8 4,669,680 - -0.2 4,669,682 - +0.3 4,669,823 - CA264_20235 0.14 +0.3 4,669,833 - CA264_20235 0.17 -0.0 4,669,871 + CA264_20235 0.26 +0.6 4,669,912 + CA264_20235 0.37 -0.3 4,669,916 + CA264_20235 0.38 -1.3
Or see this region's nucleotide sequence