Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_18925

Experiment: m.b. Tetracycline 0.003 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_18920 and CA264_18925 are separated by 10 nucleotidesCA264_18925 and CA264_18930 are separated by 315 nucleotides CA264_18920: CA264_18920 - xenobiotic-transporting ATPase, at 4,392,894 to 4,394,627 _18920 CA264_18925: CA264_18925 - TetR family transcriptional regulator, at 4,394,638 to 4,395,324 _18925 CA264_18930: CA264_18930 - RNA helicase, at 4,395,640 to 4,396,905 _18930 Position (kb) 4394 4395 4396Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4393.708 kb on + strand, within CA264_18920at 4393.763 kb on + strand, within CA264_18920at 4393.763 kb on + strand, within CA264_18920at 4393.764 kb on - strand, within CA264_18920at 4393.850 kb on + strand, within CA264_18920at 4393.859 kb on + strand, within CA264_18920at 4393.924 kb on + strand, within CA264_18920at 4393.932 kb on + strand, within CA264_18920at 4393.933 kb on - strand, within CA264_18920at 4394.031 kb on - strand, within CA264_18920at 4394.031 kb on - strand, within CA264_18920at 4394.033 kb on - strand, within CA264_18920at 4394.033 kb on - strand, within CA264_18920at 4394.038 kb on + strand, within CA264_18920at 4394.038 kb on + strand, within CA264_18920at 4394.039 kb on - strand, within CA264_18920at 4394.039 kb on - strand, within CA264_18920at 4394.091 kb on + strand, within CA264_18920at 4394.091 kb on + strand, within CA264_18920at 4394.092 kb on - strand, within CA264_18920at 4394.110 kb on - strand, within CA264_18920at 4394.110 kb on - strand, within CA264_18920at 4394.137 kb on + strand, within CA264_18920at 4394.137 kb on + strand, within CA264_18920at 4394.146 kb on + strand, within CA264_18920at 4394.158 kb on - strand, within CA264_18920at 4394.272 kb on + strand, within CA264_18920at 4394.276 kb on - strand, within CA264_18920at 4394.355 kb on + strand, within CA264_18920at 4394.381 kb on + strand, within CA264_18920at 4394.533 kb on + strandat 4394.533 kb on + strandat 4394.534 kb on - strandat 4394.535 kb on + strandat 4394.535 kb on + strandat 4394.535 kb on + strandat 4394.535 kb on + strandat 4394.536 kb on - strandat 4394.539 kb on + strandat 4394.539 kb on + strandat 4394.539 kb on + strandat 4394.539 kb on + strandat 4394.540 kb on - strandat 4394.540 kb on - strandat 4394.540 kb on - strandat 4394.545 kb on + strandat 4394.545 kb on + strandat 4394.546 kb on - strandat 4394.546 kb on - strandat 4394.602 kb on + strandat 4394.603 kb on - strandat 4394.603 kb on - strandat 4394.621 kb on + strandat 4394.621 kb on + strandat 4394.622 kb on - strandat 4394.622 kb on - strandat 4394.627 kb on + strandat 4394.628 kb on - strandat 4394.628 kb on - strandat 4394.788 kb on + strand, within CA264_18925at 4394.788 kb on + strand, within CA264_18925at 4394.788 kb on + strand, within CA264_18925at 4394.865 kb on - strand, within CA264_18925at 4394.876 kb on + strand, within CA264_18925at 4394.910 kb on + strand, within CA264_18925at 4394.910 kb on + strand, within CA264_18925at 4394.910 kb on + strand, within CA264_18925at 4394.911 kb on - strand, within CA264_18925at 4394.915 kb on + strand, within CA264_18925at 4394.916 kb on - strand, within CA264_18925at 4394.917 kb on + strand, within CA264_18925at 4394.918 kb on - strand, within CA264_18925at 4394.918 kb on - strand, within CA264_18925at 4395.056 kb on - strand, within CA264_18925at 4395.108 kb on - strand, within CA264_18925at 4395.218 kb on - strand, within CA264_18925at 4395.278 kb on - strandat 4395.282 kb on - strandat 4395.320 kb on - strandat 4395.320 kb on - strandat 4395.320 kb on - strandat 4395.324 kb on + strandat 4395.324 kb on + strandat 4395.325 kb on - strandat 4395.325 kb on - strandat 4395.574 kb on + strandat 4395.574 kb on + strandat 4395.575 kb on - strandat 4395.575 kb on - strandat 4395.580 kb on + strandat 4395.580 kb on + strandat 4395.610 kb on + strandat 4395.610 kb on + strandat 4395.610 kb on + strandat 4395.611 kb on - strandat 4395.614 kb on + strandat 4395.624 kb on + strandat 4395.626 kb on + strandat 4395.627 kb on - strandat 4395.627 kb on - strandat 4395.630 kb on + strandat 4395.630 kb on + strandat 4395.675 kb on - strandat 4395.789 kb on + strand, within CA264_18930at 4395.789 kb on + strand, within CA264_18930at 4395.835 kb on - strand, within CA264_18930at 4395.948 kb on + strand, within CA264_18930at 4396.069 kb on - strand, within CA264_18930at 4396.070 kb on + strand, within CA264_18930at 4396.071 kb on - strand, within CA264_18930at 4396.135 kb on - strand, within CA264_18930at 4396.295 kb on + strand, within CA264_18930at 4396.295 kb on + strand, within CA264_18930at 4396.296 kb on - strand, within CA264_18930

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.003 mg/ml
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4,393,708 + CA264_18920 0.47 -0.6
4,393,763 + CA264_18920 0.50 -0.8
4,393,763 + CA264_18920 0.50 +0.1
4,393,764 - CA264_18920 0.50 +0.6
4,393,850 + CA264_18920 0.55 +0.4
4,393,859 + CA264_18920 0.56 -0.2
4,393,924 + CA264_18920 0.59 +0.8
4,393,932 + CA264_18920 0.60 +0.3
4,393,933 - CA264_18920 0.60 -0.1
4,394,031 - CA264_18920 0.66 -0.5
4,394,031 - CA264_18920 0.66 -0.7
4,394,033 - CA264_18920 0.66 -0.3
4,394,033 - CA264_18920 0.66 +0.2
4,394,038 + CA264_18920 0.66 +0.3
4,394,038 + CA264_18920 0.66 +0.3
4,394,039 - CA264_18920 0.66 +1.2
4,394,039 - CA264_18920 0.66 +1.1
4,394,091 + CA264_18920 0.69 +0.9
4,394,091 + CA264_18920 0.69 +0.3
4,394,092 - CA264_18920 0.69 +0.8
4,394,110 - CA264_18920 0.70 -0.9
4,394,110 - CA264_18920 0.70 +0.1
4,394,137 + CA264_18920 0.72 -0.4
4,394,137 + CA264_18920 0.72 -1.3
4,394,146 + CA264_18920 0.72 +0.4
4,394,158 - CA264_18920 0.73 -0.6
4,394,272 + CA264_18920 0.79 -0.0
4,394,276 - CA264_18920 0.80 +0.7
4,394,355 + CA264_18920 0.84 -0.4
4,394,381 + CA264_18920 0.86 -0.7
4,394,533 + -1.0
4,394,533 + -0.4
4,394,534 - -0.2
4,394,535 + +0.4
4,394,535 + +1.8
4,394,535 + -0.0
4,394,535 + -1.5
4,394,536 - +0.6
4,394,539 + -2.5
4,394,539 + +0.8
4,394,539 + +1.7
4,394,539 + -0.3
4,394,540 - -0.5
4,394,540 - -1.0
4,394,540 - -0.0
4,394,545 + +0.1
4,394,545 + -0.2
4,394,546 - -0.6
4,394,546 - +0.3
4,394,602 + +0.5
4,394,603 - -1.3
4,394,603 - -0.4
4,394,621 + +0.9
4,394,621 + -0.1
4,394,622 - +0.1
4,394,622 - +0.4
4,394,627 + +0.5
4,394,628 - +1.3
4,394,628 - +0.4
4,394,788 + CA264_18925 0.22 +0.3
4,394,788 + CA264_18925 0.22 +3.0
4,394,788 + CA264_18925 0.22 +1.0
4,394,865 - CA264_18925 0.33 -0.7
4,394,876 + CA264_18925 0.35 -0.6
4,394,910 + CA264_18925 0.40 -0.0
4,394,910 + CA264_18925 0.40 -0.3
4,394,910 + CA264_18925 0.40 +0.3
4,394,911 - CA264_18925 0.40 +0.2
4,394,915 + CA264_18925 0.40 -1.0
4,394,916 - CA264_18925 0.40 +0.1
4,394,917 + CA264_18925 0.41 +0.1
4,394,918 - CA264_18925 0.41 +0.4
4,394,918 - CA264_18925 0.41 +1.8
4,395,056 - CA264_18925 0.61 -1.6
4,395,108 - CA264_18925 0.68 +0.0
4,395,218 - CA264_18925 0.84 -0.4
4,395,278 - +0.7
4,395,282 - -0.6
4,395,320 - +2.4
4,395,320 - +2.0
4,395,320 - +1.3
4,395,324 + +0.3
4,395,324 + -0.4
4,395,325 - -0.2
4,395,325 - -0.3
4,395,574 + +0.5
4,395,574 + -0.3
4,395,575 - +0.1
4,395,575 - +0.0
4,395,580 + +0.8
4,395,580 + -0.4
4,395,610 + -0.1
4,395,610 + +0.8
4,395,610 + -0.5
4,395,611 - -0.3
4,395,614 + +0.4
4,395,624 + +0.1
4,395,626 + +0.0
4,395,627 - -0.4
4,395,627 - +0.3
4,395,630 + +0.2
4,395,630 + -1.9
4,395,675 - +0.2
4,395,789 + CA264_18930 0.12 -0.8
4,395,789 + CA264_18930 0.12 -0.6
4,395,835 - CA264_18930 0.15 -0.3
4,395,948 + CA264_18930 0.24 -0.4
4,396,069 - CA264_18930 0.34 -0.7
4,396,070 + CA264_18930 0.34 -0.7
4,396,071 - CA264_18930 0.34 +1.8
4,396,135 - CA264_18930 0.39 -0.3
4,396,295 + CA264_18930 0.52 +0.2
4,396,295 + CA264_18930 0.52 -0.4
4,396,296 - CA264_18930 0.52 -0.7

Or see this region's nucleotide sequence