Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_17360

Experiment: m.b. Tetracycline 0.003 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_17355 and CA264_17360 are separated by 7 nucleotidesCA264_17360 and CA264_17365 are separated by 90 nucleotidesCA264_17365 and CA264_17370 are separated by 104 nucleotides CA264_17355: CA264_17355 - ribonuclease R, at 4,045,485 to 4,047,767 _17355 CA264_17360: CA264_17360 - geranyl transferase, at 4,047,775 to 4,048,749 _17360 CA264_17365: CA264_17365 - rhomboid family intramembrane serine protease, at 4,048,840 to 4,049,463 _17365 CA264_17370: CA264_17370 - hypothetical protein, at 4,049,568 to 4,050,053 _17370 Position (kb) 4047 4048 4049Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 4046.897 kb on + strand, within CA264_17355at 4046.904 kb on - strand, within CA264_17355at 4046.937 kb on + strand, within CA264_17355at 4046.937 kb on + strand, within CA264_17355at 4046.938 kb on - strand, within CA264_17355at 4046.968 kb on + strand, within CA264_17355at 4047.019 kb on - strand, within CA264_17355at 4047.133 kb on + strand, within CA264_17355at 4047.134 kb on - strand, within CA264_17355at 4047.332 kb on + strand, within CA264_17355at 4047.486 kb on - strand, within CA264_17355at 4047.546 kb on - strandat 4047.546 kb on - strandat 4047.616 kb on - strandat 4047.636 kb on + strandat 4048.774 kb on - strandat 4048.774 kb on - strandat 4048.774 kb on - strandat 4048.774 kb on - strandat 4048.774 kb on - strandat 4048.817 kb on - strandat 4049.026 kb on - strand, within CA264_17365at 4049.033 kb on - strand, within CA264_17365at 4049.093 kb on + strand, within CA264_17365at 4049.093 kb on + strand, within CA264_17365at 4049.102 kb on - strand, within CA264_17365at 4049.127 kb on + strand, within CA264_17365at 4049.149 kb on + strand, within CA264_17365at 4049.150 kb on - strand, within CA264_17365at 4049.150 kb on - strand, within CA264_17365at 4049.177 kb on - strand, within CA264_17365at 4049.302 kb on + strand, within CA264_17365at 4049.311 kb on + strand, within CA264_17365at 4049.311 kb on + strand, within CA264_17365at 4049.311 kb on + strand, within CA264_17365at 4049.312 kb on - strand, within CA264_17365at 4049.461 kb on + strandat 4049.536 kb on + strandat 4049.542 kb on + strandat 4049.542 kb on + strandat 4049.542 kb on + strandat 4049.552 kb on + strandat 4049.564 kb on + strandat 4049.565 kb on - strandat 4049.565 kb on - strandat 4049.565 kb on - strandat 4049.565 kb on - strandat 4049.565 kb on - strandat 4049.588 kb on + strandat 4049.589 kb on - strandat 4049.589 kb on - strandat 4049.592 kb on + strandat 4049.597 kb on - strandat 4049.697 kb on + strand, within CA264_17370

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.003 mg/ml
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4,046,897 + CA264_17355 0.62 -4.1
4,046,904 - CA264_17355 0.62 -0.7
4,046,937 + CA264_17355 0.64 -1.4
4,046,937 + CA264_17355 0.64 -1.7
4,046,938 - CA264_17355 0.64 +0.4
4,046,968 + CA264_17355 0.65 -1.9
4,047,019 - CA264_17355 0.67 -3.7
4,047,133 + CA264_17355 0.72 -2.4
4,047,134 - CA264_17355 0.72 -3.2
4,047,332 + CA264_17355 0.81 -2.2
4,047,486 - CA264_17355 0.88 -2.2
4,047,546 - -3.9
4,047,546 - -2.3
4,047,616 - -1.4
4,047,636 + +0.1
4,048,774 - +0.4
4,048,774 - -1.0
4,048,774 - -0.6
4,048,774 - -0.9
4,048,774 - -0.6
4,048,817 - +0.3
4,049,026 - CA264_17365 0.30 -0.1
4,049,033 - CA264_17365 0.31 -0.8
4,049,093 + CA264_17365 0.41 -0.7
4,049,093 + CA264_17365 0.41 +1.0
4,049,102 - CA264_17365 0.42 -0.6
4,049,127 + CA264_17365 0.46 +0.1
4,049,149 + CA264_17365 0.50 +0.5
4,049,150 - CA264_17365 0.50 -0.4
4,049,150 - CA264_17365 0.50 +0.2
4,049,177 - CA264_17365 0.54 -0.1
4,049,302 + CA264_17365 0.74 -1.0
4,049,311 + CA264_17365 0.75 +0.1
4,049,311 + CA264_17365 0.75 +0.0
4,049,311 + CA264_17365 0.75 +0.9
4,049,312 - CA264_17365 0.76 +0.5
4,049,461 + -0.2
4,049,536 + -0.5
4,049,542 + +1.7
4,049,542 + +0.4
4,049,542 + +0.4
4,049,552 + +0.0
4,049,564 + +0.4
4,049,565 - -0.4
4,049,565 - -0.0
4,049,565 - -0.0
4,049,565 - -0.5
4,049,565 - -0.2
4,049,588 + +0.3
4,049,589 - -0.1
4,049,589 - -0.4
4,049,592 + -0.4
4,049,597 - +0.9
4,049,697 + CA264_17370 0.27 +0.4

Or see this region's nucleotide sequence