Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_16630

Experiment: m.b. Tetracycline 0.003 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_16620 and CA264_16625 are separated by 0 nucleotidesCA264_16625 and CA264_16630 are separated by 108 nucleotidesCA264_16630 and CA264_16635 are separated by 595 nucleotides CA264_16620: CA264_16620 - hypothetical protein, at 3,863,652 to 3,865,187 _16620 CA264_16625: CA264_16625 - SAM-dependent methyltransferase, at 3,865,188 to 3,865,919 _16625 CA264_16630: CA264_16630 - DUF58 domain-containing protein, at 3,866,028 to 3,866,924 _16630 CA264_16635: CA264_16635 - AAA family ATPase, at 3,867,520 to 3,868,515 _16635 Position (kb) 3866 3867Strain fitness (log2 ratio) -2 -1 0 1 2at 3865.105 kb on - strandat 3865.130 kb on - strandat 3865.157 kb on - strandat 3865.200 kb on + strandat 3865.248 kb on + strandat 3865.249 kb on - strandat 3865.337 kb on - strand, within CA264_16625at 3865.366 kb on + strand, within CA264_16625at 3865.367 kb on - strand, within CA264_16625at 3865.371 kb on - strand, within CA264_16625at 3865.459 kb on + strand, within CA264_16625at 3865.470 kb on + strand, within CA264_16625at 3865.473 kb on - strand, within CA264_16625at 3865.481 kb on - strand, within CA264_16625at 3865.481 kb on - strand, within CA264_16625at 3865.495 kb on - strand, within CA264_16625at 3865.499 kb on + strand, within CA264_16625at 3865.499 kb on + strand, within CA264_16625at 3865.503 kb on + strand, within CA264_16625at 3865.515 kb on - strand, within CA264_16625at 3865.532 kb on - strand, within CA264_16625at 3865.585 kb on + strand, within CA264_16625at 3865.629 kb on + strand, within CA264_16625at 3865.630 kb on - strand, within CA264_16625at 3865.658 kb on + strand, within CA264_16625at 3865.677 kb on + strand, within CA264_16625at 3865.685 kb on - strand, within CA264_16625at 3865.744 kb on - strand, within CA264_16625at 3865.744 kb on - strand, within CA264_16625at 3865.865 kb on - strandat 3865.876 kb on + strandat 3865.876 kb on + strandat 3865.910 kb on + strandat 3865.935 kb on + strandat 3865.935 kb on + strandat 3865.936 kb on - strandat 3865.936 kb on - strandat 3865.936 kb on - strandat 3865.939 kb on + strandat 3865.939 kb on + strandat 3866.069 kb on + strandat 3866.073 kb on + strandat 3866.073 kb on + strandat 3866.163 kb on + strand, within CA264_16630at 3866.164 kb on - strand, within CA264_16630at 3866.193 kb on + strand, within CA264_16630at 3866.194 kb on - strand, within CA264_16630at 3866.194 kb on - strand, within CA264_16630at 3866.311 kb on - strand, within CA264_16630at 3866.317 kb on + strand, within CA264_16630at 3866.332 kb on - strand, within CA264_16630at 3866.351 kb on - strand, within CA264_16630at 3866.351 kb on - strand, within CA264_16630at 3866.406 kb on - strand, within CA264_16630at 3866.446 kb on - strand, within CA264_16630at 3866.486 kb on + strand, within CA264_16630at 3866.533 kb on + strand, within CA264_16630at 3866.533 kb on + strand, within CA264_16630at 3866.533 kb on + strand, within CA264_16630at 3866.534 kb on - strand, within CA264_16630at 3866.569 kb on + strand, within CA264_16630at 3866.615 kb on + strand, within CA264_16630at 3866.659 kb on - strand, within CA264_16630at 3866.660 kb on + strand, within CA264_16630at 3866.704 kb on + strand, within CA264_16630at 3866.704 kb on + strand, within CA264_16630at 3866.704 kb on + strand, within CA264_16630at 3866.705 kb on - strand, within CA264_16630at 3866.705 kb on - strand, within CA264_16630at 3866.705 kb on - strand, within CA264_16630at 3866.705 kb on - strand, within CA264_16630at 3866.705 kb on - strand, within CA264_16630at 3866.767 kb on + strand, within CA264_16630at 3866.832 kb on - strand, within CA264_16630at 3866.875 kb on - strandat 3866.937 kb on - strandat 3866.942 kb on - strandat 3866.949 kb on - strandat 3867.002 kb on + strandat 3867.033 kb on + strandat 3867.138 kb on + strandat 3867.138 kb on + strandat 3867.141 kb on + strandat 3867.142 kb on - strandat 3867.142 kb on - strandat 3867.142 kb on - strandat 3867.143 kb on + strandat 3867.144 kb on - strandat 3867.144 kb on - strandat 3867.146 kb on + strandat 3867.147 kb on - strandat 3867.148 kb on + strandat 3867.171 kb on + strandat 3867.187 kb on + strandat 3867.253 kb on - strandat 3867.453 kb on - strandat 3867.482 kb on + strandat 3867.521 kb on + strandat 3867.522 kb on - strandat 3867.527 kb on - strandat 3867.569 kb on - strandat 3867.655 kb on - strand, within CA264_16635at 3867.658 kb on - strand, within CA264_16635at 3867.671 kb on - strand, within CA264_16635at 3867.671 kb on - strand, within CA264_16635at 3867.688 kb on + strand, within CA264_16635at 3867.715 kb on + strand, within CA264_16635at 3867.715 kb on + strand, within CA264_16635at 3867.715 kb on + strand, within CA264_16635at 3867.715 kb on + strand, within CA264_16635at 3867.716 kb on - strand, within CA264_16635at 3867.716 kb on - strand, within CA264_16635at 3867.716 kb on - strand, within CA264_16635at 3867.716 kb on - strand, within CA264_16635at 3867.718 kb on - strand, within CA264_16635at 3867.718 kb on - strand, within CA264_16635at 3867.718 kb on - strand, within CA264_16635at 3867.759 kb on - strand, within CA264_16635at 3867.776 kb on - strand, within CA264_16635at 3867.817 kb on + strand, within CA264_16635at 3867.821 kb on + strand, within CA264_16635at 3867.821 kb on + strand, within CA264_16635at 3867.822 kb on - strand, within CA264_16635at 3867.822 kb on - strand, within CA264_16635at 3867.825 kb on + strand, within CA264_16635at 3867.825 kb on + strand, within CA264_16635at 3867.825 kb on + strand, within CA264_16635at 3867.825 kb on + strand, within CA264_16635at 3867.825 kb on + strand, within CA264_16635at 3867.825 kb on + strand, within CA264_16635at 3867.825 kb on + strand, within CA264_16635at 3867.826 kb on - strand, within CA264_16635at 3867.847 kb on + strand, within CA264_16635at 3867.847 kb on + strand, within CA264_16635at 3867.848 kb on - strand, within CA264_16635at 3867.904 kb on + strand, within CA264_16635

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.003 mg/ml
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3,865,105 - +0.2
3,865,130 - +0.4
3,865,157 - -0.3
3,865,200 + -0.2
3,865,248 + -0.3
3,865,249 - +0.2
3,865,337 - CA264_16625 0.20 +0.4
3,865,366 + CA264_16625 0.24 +1.5
3,865,367 - CA264_16625 0.24 +0.9
3,865,371 - CA264_16625 0.25 +0.1
3,865,459 + CA264_16625 0.37 -0.5
3,865,470 + CA264_16625 0.39 -1.9
3,865,473 - CA264_16625 0.39 +0.9
3,865,481 - CA264_16625 0.40 -0.0
3,865,481 - CA264_16625 0.40 +0.5
3,865,495 - CA264_16625 0.42 +0.0
3,865,499 + CA264_16625 0.42 -0.3
3,865,499 + CA264_16625 0.42 +1.0
3,865,503 + CA264_16625 0.43 -0.0
3,865,515 - CA264_16625 0.45 +0.8
3,865,532 - CA264_16625 0.47 -0.1
3,865,585 + CA264_16625 0.54 +0.2
3,865,629 + CA264_16625 0.60 +0.2
3,865,630 - CA264_16625 0.60 +0.1
3,865,658 + CA264_16625 0.64 -0.0
3,865,677 + CA264_16625 0.67 -0.5
3,865,685 - CA264_16625 0.68 +0.2
3,865,744 - CA264_16625 0.76 +0.3
3,865,744 - CA264_16625 0.76 -0.8
3,865,865 - +0.9
3,865,876 + -2.2
3,865,876 + +0.9
3,865,910 + -1.0
3,865,935 + +0.6
3,865,935 + -0.3
3,865,936 - +0.3
3,865,936 - +0.3
3,865,936 - +0.5
3,865,939 + +0.1
3,865,939 + -0.2
3,866,069 + -0.5
3,866,073 + +0.5
3,866,073 + -0.9
3,866,163 + CA264_16630 0.15 -0.1
3,866,164 - CA264_16630 0.15 -0.1
3,866,193 + CA264_16630 0.18 -0.9
3,866,194 - CA264_16630 0.19 +0.2
3,866,194 - CA264_16630 0.19 -0.4
3,866,311 - CA264_16630 0.32 -0.2
3,866,317 + CA264_16630 0.32 +0.3
3,866,332 - CA264_16630 0.34 +1.2
3,866,351 - CA264_16630 0.36 -0.4
3,866,351 - CA264_16630 0.36 -0.8
3,866,406 - CA264_16630 0.42 -2.7
3,866,446 - CA264_16630 0.47 +0.5
3,866,486 + CA264_16630 0.51 -0.1
3,866,533 + CA264_16630 0.56 -1.2
3,866,533 + CA264_16630 0.56 -0.1
3,866,533 + CA264_16630 0.56 +0.4
3,866,534 - CA264_16630 0.56 -1.3
3,866,569 + CA264_16630 0.60 +0.5
3,866,615 + CA264_16630 0.65 -0.5
3,866,659 - CA264_16630 0.70 +0.8
3,866,660 + CA264_16630 0.70 -0.8
3,866,704 + CA264_16630 0.75 -1.0
3,866,704 + CA264_16630 0.75 -0.3
3,866,704 + CA264_16630 0.75 -0.3
3,866,705 - CA264_16630 0.75 +0.8
3,866,705 - CA264_16630 0.75 +0.0
3,866,705 - CA264_16630 0.75 -0.0
3,866,705 - CA264_16630 0.75 +0.2
3,866,705 - CA264_16630 0.75 +0.3
3,866,767 + CA264_16630 0.82 +0.1
3,866,832 - CA264_16630 0.90 +0.3
3,866,875 - -0.2
3,866,937 - +0.2
3,866,942 - -0.4
3,866,949 - +0.3
3,867,002 + +0.4
3,867,033 + +0.0
3,867,138 + +1.2
3,867,138 + +0.6
3,867,141 + +0.9
3,867,142 - +0.5
3,867,142 - -0.5
3,867,142 - +0.7
3,867,143 + +0.5
3,867,144 - +0.5
3,867,144 - +0.0
3,867,146 + +0.3
3,867,147 - +1.8
3,867,148 + +0.9
3,867,171 + -0.1
3,867,187 + +1.1
3,867,253 - +0.5
3,867,453 - -0.4
3,867,482 + +0.4
3,867,521 + -0.2
3,867,522 - +0.5
3,867,527 - +0.5
3,867,569 - +0.3
3,867,655 - CA264_16635 0.14 -0.2
3,867,658 - CA264_16635 0.14 +0.3
3,867,671 - CA264_16635 0.15 +0.4
3,867,671 - CA264_16635 0.15 +0.9
3,867,688 + CA264_16635 0.17 +0.0
3,867,715 + CA264_16635 0.20 +0.3
3,867,715 + CA264_16635 0.20 +0.2
3,867,715 + CA264_16635 0.20 +0.8
3,867,715 + CA264_16635 0.20 +0.8
3,867,716 - CA264_16635 0.20 +0.5
3,867,716 - CA264_16635 0.20 +1.1
3,867,716 - CA264_16635 0.20 +0.5
3,867,716 - CA264_16635 0.20 -1.2
3,867,718 - CA264_16635 0.20 +1.1
3,867,718 - CA264_16635 0.20 +0.2
3,867,718 - CA264_16635 0.20 +0.6
3,867,759 - CA264_16635 0.24 +0.1
3,867,776 - CA264_16635 0.26 +0.1
3,867,817 + CA264_16635 0.30 -0.4
3,867,821 + CA264_16635 0.30 +0.2
3,867,821 + CA264_16635 0.30 +0.2
3,867,822 - CA264_16635 0.30 -0.0
3,867,822 - CA264_16635 0.30 +0.2
3,867,825 + CA264_16635 0.31 +0.0
3,867,825 + CA264_16635 0.31 -0.4
3,867,825 + CA264_16635 0.31 -0.2
3,867,825 + CA264_16635 0.31 -0.1
3,867,825 + CA264_16635 0.31 +0.6
3,867,825 + CA264_16635 0.31 +0.6
3,867,825 + CA264_16635 0.31 -0.1
3,867,826 - CA264_16635 0.31 +0.1
3,867,847 + CA264_16635 0.33 +0.3
3,867,847 + CA264_16635 0.33 -0.2
3,867,848 - CA264_16635 0.33 -0.2
3,867,904 + CA264_16635 0.39 +1.3

Or see this region's nucleotide sequence